Tamlana sp. s12: JJL45_07415
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Entry
JJL45_07415 CDS
T10518
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tay Tamlana sp. s12
Pathway
tay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JJL45_07415 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tay03021
]
JJL45_07415 (rpoB)
03400 DNA repair and recombination proteins [BR:
tay03400
]
JJL45_07415 (rpoB)
Enzymes [BR:
tay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JJL45_07415 (rpoB)
Transcription machinery [BR:
tay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JJL45_07415 (rpoB)
DNA repair and recombination proteins [BR:
tay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JJL45_07415 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QQY83802
LinkDB
All DBs
Position
1707696..1711508
Genome browser
AA seq
1270 aa
AA seq
DB search
MLSTQAERLNFSSIVNRTEYPDFLDIQIKSFQDFFQLETKSEERGDEGLYNTFMENFPIT
DSRNQFVLEFLDYFVDPPRYAIEECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEAKVSKSGLKKYLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTILDKENIEEILEADVKTILLHKESTE
QGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLGLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNPMGFIETPYRKVTDGVVDIKNDPVYLSAEEEEEKLIAQATVKVDDDGKILHDKVIARM
EGDFPVIEPEKLDYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDAP
IVGTGLERQVASDSRVLINAEGEGEVLYVDAKEIQIRYERTEDEAKVSFDSDVKTYQLVK
YRKTNQGTSINLKPIVVKGDKVSKGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRVGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIEKKLFA
RAVKDKRKRAQDKDDILALEAQYDRKFDELKDILVEKLFNIVNGKTAQGIYNDLGEEVLP
KGKKFTLKMLNAVDDYAHLVSGKWTTDDHTNQLVADLIHNYKIKENDLQGSLRREKFTIS
VGDELPAGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRKYATPIFDGATIDQINGFTDEAGIPRYGHTY
LYDGGTGQRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGEPMPDPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttatcaacacaagctgaaagattaaatttctcctctattgtaaatagaacagaatat
ccagacttcttggatattcagattaaatccttccaggattttttccaattagaaactaaa
tctgaggaaagaggcgatgaaggtctttacaataccttcatggaaaactttccaatcaca
gattctcgtaatcaattcgtattagaatttttagattacttcgtagatccaccaagatat
gctattgaagagtgtattgagagagggctaacttacagcgttccgctaaaggctaggtta
aagttatattgtacagaccctgaacatgaggatttcgagaccattgttcaagatgtgtat
ttaggaactattccttacatgacgccttcaggaactttttgtattaatggtgcagaacgt
gttgttgtttctcaattacaccgttcaccaggagttttcttcgggcaatctttccatgcc
aatggaaccaaattatattcagcaagggttataccattcaagggatcttggattgagttt
gctacagatattaaccaggtaatgtatgcttacattgatagaaagaaaaaattacctgta
actacgcttttccgtgctatcggttttgagcgtgataaagacattttagagatttttgac
ttagcagaagaagctaaagtatcaaaatctggattaaagaaatacttaggaagaaaatta
gctgctcgtgtattaaatacatggcatgaggattttgttgatgaagatactggagaggtg
gtttcaatcgagcgtaatgaaatcgtgcttgatcgtgatactatccttgacaaagaaaat
atagaagaaattcttgaagctgacgttaaaacgattcttttacataaagaaagtacagaa
caaggggattatgccattatccacaacacgcttcaaaaagatccaacaaactctgaaaaa
gaggctgttgaacatatttacagacaactacgtaatgcagagccgccagatgaggaaact
gcacgtggtattattgataaattattctttagtgaccaacgttactctcttggagaagtt
ggacgttatagaatgaacaaaaaattaggtcttgatattggtatggataagcaagtgctt
actaaagaagatatcattaccatcattaaatatttaatcgagcttatcaactctaaagca
gagattgatgatatcgatcacttatctaaccgtcgtgttcgtaccgtaggagaacaatta
tcatcacaatttggtgttggtttagctcgtatggcgcgtaccattcgtgagcgtatgaac
gttcgtgataacgaggtatttacgcctatagatttaattaatgctaagactttatcgtct
gtaattaattctttcttcggaacaaaccagttatctcaatttatggatcaaaccaatcca
cttgctgaaatcacgcacaagcgtcgtttatcagctcttggaccaggaggtttatcaaga
gagcgtgctgggttcgaggtacgtgacgttcactatactcactacggtcgtttatgtcct
attgaaacaccagagggaccaaacattggtttaatttcttcactttctgtttatgcaaaa
gtgaacccaatgggattcatcgaaacaccttatagaaaagtaactgatggtgttgttgat
attaaaaatgatcctgtttatttaagtgcagaggaagaggaagaaaaattaatcgctcaa
gcaacagttaaagttgatgacgatggtaaaattcttcacgataaagttattgctagaatg
gagggtgatttccctgttattgagccagaaaaattagactatacggatgtagcgcctaat
caaatttcttcaatttcagcatcgcttattcctttcttagagcatgatgatgcgaaccgt
gccttgatgggatcaaacatgatgcgtcaagcggtaccattattaagagtagatgcacct
attgtaggaactggattagagcgtcaagtagcttcagattctagagtattgattaatgca
gaaggagaaggagaagtactttacgtagatgctaaagaaatccaaatcagatacgagcgt
actgaggatgaagctaaagtaagttttgatagcgatgttaaaacataccaattagtaaaa
tacagaaaaacaaaccaaggaacttctattaacctgaaaccaatcgtggttaaaggtgat
aaagtatctaaaggtcaagttttatgtgaaggatacgcaactcaaaaaggagaattagct
ttaggtagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggatgcg
attgtaatttctgaaaaggtggttcgtgaagatattttcacgtctattcatatcgatgag
tactctctagaagttagagatactaaattaggtaatgaagaattaactaacgatatccct
aacgtttctgaagaggctactaaagaccttgatgaaaacggtatgattcgcgttggtgcc
gaggttaaacctggcgatattcttattggtaagattacacctaaaggggaatctgatcca
actcctgaagaaaaattattacgtgcgatctttggtgataaagctggagatgtaaaagat
gcttctttaaaagcttcaccttctttaaatggtgttgtaattgaaaagaaattattcgca
agagccgtaaaagataaacgtaaacgtgcacaggataaagatgatattcttgctcttgaa
gcacaatacgatagaaagttcgacgagcttaaagatattttagttgaaaaacttttcaat
attgtaaacggaaaaacagctcaaggtatttataatgacttaggtgaagaagtactacca
aaaggtaaaaaattcacacttaaaatgttaaatgctgttgatgattatgcgcatttagtg
tctggaaaatggactactgatgatcatactaaccaattggtggctgatttaattcacaat
tataagattaaagaaaacgatttacagggttctttacgtcgtgagaagtttacaatttct
gttggtgatgagttaccagcaggtatcataaaattagctaaagtttacatcgctaaaaaa
cgtaaacttaaagttggtgataaaatggcaggacgtcacggtaacaaaggtattgttgct
agaatcgttcgtcaagaagatatgccattcttagaagatggaacccctgttgatattgtg
ttaaatccacttggtgtaccttctcgaatgaacattggtcaaatttatgaaactgtactt
ggttgggctggacaaaaattaggacgcaaatatgctacacctatttttgacggagcaaca
atcgatcagattaacggatttacagatgaagctggaattccaagatatggtcatacctac
ctttatgatggtggtaccggacagcgttttgatcagccagcaacagttggtgtgatttac
atgctgaaattaggacacatggtcgatgataaaatgcacgcgcgttctattggaccttac
tcattaattacgcaacaaccattaggtggtaaagcacagtttggtggtcagcgttttggt
gagatggaagtttgggcacttgaggcttatggcgcatcaagcaccttacgtgagatctta
actgtaaaatctgatgatgttattggtagagctaaaacttacgaggcaatcgtaaaaggt
gaaccaatgccagatccaggattaccagaatcattcaacgtacttatgcacgaattgaaa
ggtttaggtttagacatcagattagaggagtaa
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integrated database retrieval system
