Turicibacter bilis: J0J69_09560
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Entry
J0J69_09560 CDS
T08328
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tbb
Turicibacter bilis
Pathway
tbb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J0J69_09560 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbb03021
]
J0J69_09560 (rpoB)
03400 DNA repair and recombination proteins [BR:
tbb03400
]
J0J69_09560 (rpoB)
Enzymes [BR:
tbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J0J69_09560 (rpoB)
Transcription machinery [BR:
tbb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J0J69_09560 (rpoB)
DNA repair and recombination proteins [BR:
tbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J0J69_09560 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UUF05326
UniProt:
A0ABY5JF56
LinkDB
All DBs
Position
1972643..1976173
Genome browser
AA seq
1176 aa
AA seq
DB search
MAGKIVQYGKKRQRRNYSRIDVALELPNLIEIQTASYQWFLDEGIREMFKDISPIEDNNG
NLALEFVGYSLGEPKYSVLEAKERDANYAAPLRVKVRLHIKDEETHAIKEVKESEVYMGD
FPLMTPTGTFVINGSERVIVSQLVRSSGVYYNKETDKKSGKEKYAAQVIPNRGAWLEYEL
DAKDIVYVRVDRTRKIPITVLLRALGLSTKEQIIEMFGENQYILNTLEKDQTVNSDEALM
EIFQKLRQGEHATIDGARTLFVSRFFDPKRYDLAHVGRYKFNKKLSAQERLLNQKLASDI
FDSETGEVLVEEGTVITRRIFEEVLADKIDRLNIKKVELVNPLEETQTYVQEFEVYSQRV
NEGDQVVKIIGNVEDECKHITTSDIFASVSYFFNLLDSVGYLDDIDHLGNRRLRLVGELL
QNQFRIGLSRMERVVKERMSIQESEGITPSSLINIRPVTAAIKEFFGSSQLSQFMDQTNP
LSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAK
VNEFGFIETPYRKVIPVIDEATGETKMQVTGEIRYLTADEEDRYVVAQAGLDLDANDCLP
EKVIVRHRGENLIVPAERVDFVDVSPKQIVSVATACIPFLEHDDANRALMGANMQRQAIP
LLIPEAPFVGTGMEYVAAKDSGQAVVAHNSGTVEYVDSKQIRVRRDADGGLDRYPLIKFV
RSNSSTVLNQRPIVRLGDHINAGEVLADSSSMESGELALGRNVVVAFMTWNGYNYEDAII
MSERLVKDDVYTSIHIEEYELEARDTKLGPEEITRDIPGVGEDALKNLDERGIIRIGAEV
KEDDILVGKVTAKGQTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIVHDVKYFSRR
NGDDLSPGVNEVIRIYIVQKRKISEGDKMAGRHGNKGVISKILPQEDMPYMPDGTPVDIM
LNPLGVPSRMNIGQILEIHLGMAAKKLGIHVATPVFDGVKTEDLEAIIAEAGMDPDAKTV
LYDGRTGEKFDNRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEILTVKSDDITGRVKTYEAIVRGENVPEPGIPESFRVLVKELQ
SLGMDVKILSDDKDEIEIRDLENVKTHQIVVPETVE
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
gtggcagggaaaattgttcaatatggtaaaaagagacaacgtcgtaattactcaagaatt
gatgttgcactcgaactccctaacttaattgaaattcaaactgcttcttatcagtggttc
cttgatgaaggtattcgtgaaatgttcaaagacatttctccaattgaagacaataacggt
aatttagcgcttgaattcgttggatatagcttaggagaaccaaaatattctgttttagaa
gctaaagaacgcgatgctaactatgctgcccctttacgtgttaaggttcgtttacacatt
aaagacgaagaaacacacgcaattaaggaagtgaaggaaagcgaagtatacatgggggac
ttccctttaatgaccccaacaggaacatttgttatcaatggttctgaacgtgtaatcgta
tcacaattagtccgttcatcaggtgtttactacaataaagagactgataaaaagagcggt
aaagaaaaatatgctgcacaagtaattcctaaccgtggtgcatggttagagtatgaactt
gatgcaaaagacattgtttatgttcgtgtcgatagaacgcgtaaaattccaattacagtt
ttattacgtgcattaggactttcaacaaaagaacaaatcatcgaaatgtttggtgaaaat
cagtatatcttaaatacgttagaaaaagaccaaactgttaactctgatgaagcattaatg
gaaatcttccaaaaacttcgtcaaggtgagcatgctacgatcgatggtgctcgaacttta
ttcgtttctcgtttctttgatcctaaacgatacgacttagctcatgttggacgttataaa
ttcaacaaaaaattaagtgcacaagaacgtttattaaatcaaaaattagctagtgatatc
tttgattcagagacaggtgaagtactagtagaagaaggtacagtaattactcgtcgtatc
tttgaagaagtattagctgataaaattgatcgtttaaatattaaaaaagtcgaattagtg
aatcctttagaagaaacacaaacttatgttcaagaattcgaagtttattcacaacgagta
aatgaaggggatcaagttgtaaaaattatcggaaatgtagaagatgagtgtaaacacatt
actacttcagatatctttgcatctgtaagttacttcttcaacttattagattcagtaggt
tacttagatgatatcgatcacttaggaaaccgtcgtttacgtctagtaggtgaattatta
caaaaccaattccgtatcgggttatctcgtatggagcgtgttgttaaagaaagaatgtca
attcaagaaagtgaaggaatcacaccatcaagcttaattaacattcgtcctgtaacagct
gcaattaaagagttcttcggtagctcacagttatcacagttcatggatcaaactaaccca
ttatcagagttaacgcacaaacgtcgtttatctgctttagggccaggtggtttaacacgt
gaacgtgctggaatggaagtacgtgacgttcactactctcattacggtcgtatgtgtcct
atcgaaacgcctgagggaccaaacatcgggttaatcaactctttatcatcttatgcaaaa
gttaacgaatttggattcattgagactccatatcgtaaagttatcccagttattgatgaa
gcaactggagaaacaaaaatgcaagtaactggggaaatccgttatttaactgctgacgaa
gaagatcgttatgtagtagcacaagctggattagatttagatgcaaatgattgcttacct
gaaaaagtaattgttcgtcatcgtggtgaaaacttaatcgttcctgctgaacgtgttgac
ttcgtggacgtatcaccaaaacagattgtatctgttgccacagcatgtatcccgttctta
gagcacgatgatgccaaccgtgcattaatgggagccaacatgcaacgtcaggccattcct
ttattaattcctgaagccccattcgttggtacaggtatggaatatgtagcggcaaaagac
tcagggcaagcagtagttgctcacaacagcggaacagtagaatacgttgattcaaaacaa
atccgtgttcgtcgtgatgctgatggaggattagatcgttatccattaattaagtttgtt
cgttcaaactcaagtactgtattaaaccaacgtccaatcgttcgcctaggtgatcatatt
aatgctggtgaagtattagcagatagttcatcaatggaaagcggagaattagctttagga
cgtaacgtcgttgtagcattcatgacatggaacggatataactatgaggatgccatcatc
atgagtgaacgcttagtaaaagatgatgtgtatacatcaattcacattgaagaatatgaa
ttagaagctcgtgacactaagttaggcccagaagaaattacacgtgatatcccaggtgtt
ggggaagacgctcttaaaaacttagatgagcgtggaattatccgtatcggtgctgaagtt
aaagaagatgacatcttagtaggtaaagtaactgctaaaggtcagactgaattaactgca
gaagaacgtttattacatgctatcttcggtgagaaagcacgtgaagttcgtgatacatca
ttacgtgtaccacacggtggagacggaattgtgcatgacgttaaatacttctctcgtcgt
aacggtgatgacttatcaccaggtgtaaacgaagtaattcgtatttacattgttcaaaaa
cgtaaaatctctgagggagataaaatggccggacgccatggtaataaaggggttatctct
aaaatcttacctcaagaagatatgccatatatgccagatggaacaccagtggatatcatg
ttaaacccattaggggtaccatcacgtatgaacatcggtcagatcttagaaattcactta
ggtatggctgctaaaaaattaggaattcacgttgcaactccagtattcgatggtgttaaa
actgaagacttagaagcaatcatcgcagaagctggtatggacccagatgcgaagactgta
ttatatgatggacgtacaggtgaaaaattcgataaccgaatttcagttggggttatgtat
atgattaaacttgcccacatggttgatgacaaattacatgcccgttcaattggaccttac
tcattagtaactcaacagccgcttggaggtaaagctcaattcggtggacaacgtttcggt
gagatggaggtatgggcacttgaagcatacggtgcggcatacacattacaagaaatctta
acagttaagtcagatgatatcacaggacgtgttaaaacatacgaagctatcgtacgtgga
gaaaatgttcctgaaccaggtatccctgaatcattccgagtattagttaaagagttacaa
tcattaggtatggatgttaaaatcttatctgatgacaaagatgaaattgaaatccgcgat
cttgagaatgtaaaaactcatcaaatcgttgttccagaaacagttgaataa
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