Turicibacter bilis: J0J69_10590
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Entry
J0J69_10590 CDS
T08328
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tbb
Turicibacter bilis
Pathway
tbb03030
DNA replication
tbb03410
Base excision repair
tbb03420
Nucleotide excision repair
tbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J0J69_10590 (ligA)
03410 Base excision repair
J0J69_10590 (ligA)
03420 Nucleotide excision repair
J0J69_10590 (ligA)
03430 Mismatch repair
J0J69_10590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbb03032
]
J0J69_10590 (ligA)
03400 DNA repair and recombination proteins [BR:
tbb03400
]
J0J69_10590 (ligA)
Enzymes [BR:
tbb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J0J69_10590 (ligA)
DNA replication proteins [BR:
tbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J0J69_10590 (ligA)
DNA repair and recombination proteins [BR:
tbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J0J69_10590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J0J69_10590 (ligA)
MMR (mismatch excision repair)
DNA ligase
J0J69_10590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J0J69_10590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
TF_Zn_Ribbon
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
UUF05505
LinkDB
All DBs
Position
2181832..2183820
Genome browser
AA seq
662 aa
AA seq
DB search
MSKQRVEELTKLLNQYNKEYYVLDKPSVSDREYDRLMQELIELEAQYPELKSSTSPTVRV
GGAILEGFNKVQHEKPMLSLGNAFNEGDLRDFDARIRKVSPNISYVCELKIDGLAVTLHY
RDGQFVKGATRGDGVVGEDISENLKTIQTIPLHIPYKDPLEVRGEVYMSKATLDKLNKQR
AEKGEELFANPRNAAAGSLRQLDSRIAAKRELAMFCYAVPSAEELGCQTHDESLQKIEEL
GFNVNPNREVCDSIDGVLAYIEKWSTNRFDLPYEIDGIVIKVNQLNEQQKLGSTVKSPRW
AIAYKFPAEEVETILKDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNEDYVKERDI
RINDRVIIRKAGEIIPEVVKPVIDARHGDEAPFEMIQDCPRCGSELIREAGEADYYCLNI
DCPARIVESLCHFVSRDAMNIDGLGVKVVEQLYDNQLIENVADIYKLQKEQLLPLERMGE
KKVTNLLTAIENSKQNSLERLLFGLGVRHVGSKTAKVLAAHFETIDALMQATFDDFKGIA
EIGDVIANSIVHYFTQDANVQLINELKALGLNMSYTGVKVSTANEANEFYGKTVVLTGTL
ATLSRKEAGVKLEALGAKVSGSVSAKTDFLVAGEKSGSKLKKAQELGVTVIDEEMMLKML
GE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacaacgtgtcgaagaattaacgaagttgttaaatcaatacaataaagaatac
tatgtgcttgataagccaagcgtaagtgatcgtgagtatgatcgattaatgcaagagtta
atagaattggaagcacaatatccagaattaaaatcatcaacttctccaactgttcgtgtt
ggaggagcgatattagaaggatttaataaagttcaacacgaaaaaccgatgctttcatta
gggaatgcgtttaatgaaggtgatttacgtgattttgatgcacgtattcgaaaagtatca
cctaatatttcttatgtatgtgaattaaaaattgatggattagctgttacgttacactat
cgtgatggacagtttgttaaaggagcaacgcgaggagatggagtggtaggagaagatatc
tctgaaaacttaaaaacaattcaaacgattcctctacatattccatataaagatcctcta
gaggtacgtggggaagtttatatgtcaaaggcaacacttgataagttaaataaacaacgt
gctgaaaaaggagaagaattatttgcgaatcctcgtaatgcggcagcaggatcattacgt
caattagactctcgtattgcagcaaaacgtgaattagcgatgttttgctatgctgtcccg
agtgctgaagagttagggtgtcagacgcatgatgagagcttacaaaagattgaagagtta
gggtttaatgtgaatcctaaccgtgaagtttgtgactcaattgatggcgtattagcttat
attgaaaagtggtcaactaatcgctttgatttaccgtacgaaattgatggtattgtgatt
aaagtcaatcaattaaatgaacaacaaaagttaggatcaacagtgaaaagtccacgttgg
gcgattgcgtataaattcccagcagaagaagtggagactattctgaaagatattattttt
actgttggtcgtacaggaatggtaacgcctaatgcagtattagaacctgttcgtgttgct
ggaacacgtgtcagtcgtgcgacgttacataatgaggactatgttaaggagcgcgatatt
cgtattaatgaccgtgtcattattcggaaagcaggagaaattataccagaggttgttaaa
ccggttattgatgcgcgtcatggagatgaagcaccatttgaaatgattcaagactgtccg
cgttgtggtagtgagctgattcgtgaagcaggagaggcggattactactgtttaaatatt
gattgtcctgcacgtattgttgagagtttatgtcattttgtttctcgtgatgctatgaat
attgatggtttaggtgtgaaagtggttgaacaactatatgataaccagttaattgaaaat
gtagctgacatttataaattacaaaaagaacaactattacctcttgaacgtatgggagag
aagaaggtaacgaatttattaactgctattgaaaatagtaaacagaatagtttagaaaga
ttattatttggtttaggtgttcgtcatgttggaagtaagacggcaaaagtattagctgct
cattttgaaacgattgatgctttaatgcaagcaacgtttgatgatttcaaaggaattgct
gaaattggagatgtaattgctaatagtattgttcactatttcacgcaggacgctaatgtt
caattaattaatgaattaaaagcgttaggattgaatatgagttatacaggtgttaaggtt
tctactgctaatgaagcaaatgaattttatggaaaaacagttgttttaacaggaacgtta
gcaacattatctcgtaaagaagcgggtgtaaaattagaggctttaggtgctaaagtttca
ggaagtgtgagtgctaaaacggatttcttggttgctggagaaaagagtggatcaaaactt
aaaaaagcacaagaacttggtgtgacagtgattgatgaagaaatgatgttaaaaatgctt
ggtgaatag
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