Trematomus bernacchii (emerald rockcod): 117476209 Help Entry 117476209         CDS       T09643                                  Name (RefSeq) collagen alpha-6(VI) chain-like   KO K06238   collagen type VI alpha Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04510   Focal adhesion tben04512   ECM-receptor interaction tben04518   Integrin signaling tben04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117476209    04518 Integrin signaling     117476209  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     117476209   09142 Cell motility    04820 Cytoskeleton in muscle cells     117476209  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:tben04147]     117476209    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117476209 Exosome [BR:tben04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    117476209 Glycosaminoglycan binding proteins [BR:tben00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117476209  Hyaluronan   Extracellular matrix or blood plasma proteins    117476209 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  VWA VWA_2 VWA_3 VWA_CoxE vWA_SIBA-E DJ-1_PfpI DUF4517 Motif Other DBs NCBI-GeneID:  117476209 NCBI-ProteinID:  XP_033978475 LinkDB All DBs Position Unknown AA seq 1361 aa AA seqDB search MCLQAEGEHTSTECAKASVADMVFLVDGSSSIGISNFTEVRQFLRSVVTGLDIGPDKVRI GLAQYSDETYQEFLLKDHMDKTSLLEAVDTFPYRTGGTETGKAIDFLRTQYFTKEAGSRA GQRVPQIAVVITDGDSTDDVIAPAQRLRQQGVIVFGIGVGAANLQELESIANRPPERFLS SISNYAALKTLKDSLLKTVCISVEDQKQALAERFADIFFLVDSGVTAAEFQQIRTILTRL ANQLNIGASAYRLGWAQYGQDVKDEHLLNAHQTKIETLNDVKRFRQRKLQPNEPRNLGKA LMYASTNLFTSNAGSRAEQGYRQFLVVISGKDSDDPVYRESRLIKSSGITVVGLSLGASM QEMRIVATPPYIYQSITNIVPIMRAAFETEEAETVLTGDCKAAKLADIVFIVDESGSIGP LNFQLVRSFLHSIVNGLEVSPSRVRVGIVMYNTTATAQVYLNTFNNKDELLKYIKILPYQ GGGTNTGEALKFALEKVFIKQKGSRKGSGVQQVAVVITDGESQDDVSTPAAGLRRAGVTV YAVGVKDANHAQLVEMASYPPKKHKFIVDSFAKLKSLEQSLQKSLCQNILRSAISVRGNA IKEGCVQKDEADIFFLIDQSGSIYPNDFKDMKKFMIEFLNTFRIGPQHVRIGVVKYADSP DLEFDLTAHSDVKSLENAVKAIRQIGGGTETGRALTSMVPHYDRALVTRGHEVPKYLVVI TDGKSVDEVKVPAEQVRVQGVTVYAIGVKSADPVELQEIAGDPKRTFFVNHFDALTPIKD DIVTDICSPEACRDIQGDIFFLTDTSESIDEEEFQKIKDFMKSVISKSTIGENKVHVGVM QFSTSYNLEFPLNQYYSKVDISRAIDDMKQMNEGTSTGKAINEVSRYFDAARGGHPDMRQ NLILITNGLAQDEVKEPALALRNKGVVVYTIGVVDANTNQLLEISGSAKRTYTEWDFDAL KDLENELALELCTNTDCKKTEKADIIFLVDGSKSITLEKFRSMQKFMSSMVNQTIVGKDL TRFGVILYSTAHKSVFTLKQYSSKREVLKAIQELKRPSGDTYTGKALKYSLPFFNKDNGG RADLNVPQILMVITDGDATDLYSLVEPSVALRENRISVFSIGVEGANKTQLEIMAGNDSS KVFYVDSFKALESLYKNISQVLCDTTKQVCEKQQADLVFLLDQSGSIKQEDYTIMKKFTS DLVSSFKVSENLVRVGLAQFNSEFQDEFDLNKFYSQDVVNKNILSMTQRGGGTNIGQALD SIRGYFEASRGSRRSAGISQNLVLITDGESDDDVEDAADHLRALSIEVFAISIGNVHDLE LLQITGAAKRLFTVNNFGSLDKIKQSVVETICKSKLYKAGE NT seq 4086 nt NT seq  +upstreamnt  +downstreamnt atgtgcctccaggctgaaggagaacacacctcaacagaatgtgccaaagccagcgtggcg gacatggtctttctggtggacggatcctccagcatcggcatcagtaacttcacggaggtg cgacagtttctccgaagtgtcgtcacaggactcgacatcggacccgacaaggttcgtatc ggcctggctcagtacagcgatgaaacctaccaggagttcctgctgaaggatcacatggac aagacatccctgctggaggcggtggacacatttccctaccgaacaggaggcacagaaaca ggcaaggccatcgacttcctccggacgcagtatttcacgaaggaagcagggagcagagcc ggccaaagagtgcctcagatcgctgtggttatcacggatggagactccacggacgatgtg atcgcacccgcccagcgcctgaggcaacagggagtcatcgtgtttggcatcggggtggga gcagccaacctgcaggagctcgagtccatcgccaaccggcctccagagcgcttcctgtcc tccatcagtaactacgcggctctgaagacgctgaaagacagtctgctgaaaactgtgtgc atctcagtggaggatcagaagcaagccttggcagaacgttttgcagacatcttcttcctg gtggacagtggcgtgactgcagcagagtttcagcagatcaggaccatccttacccgactc gccaatcagcttaacatcggagcgtccgcctaccgcctgggctgggctcagtacggtcaa gacgtcaaggatgaacatcttcttaatgcccaccaaaccaaaatcgagacgctcaatgat gtgaagcgtttccgccagcgtaaactgcaacccaacgagcctcgtaatctgggcaaagct ctgatgtacgccagcaccaacctcttcacgagtaatgcgggaagccgtgcggaacaaggc taccgacagttcctggtggttataagtgggaaagactctgatgatcccgtgtatagggag tcccgcctgatcaaatcttctggaataaccgtggttgggttgagcctcggtgcatcaatg caggaaatgagaatcgttgccactccaccgtacatataccagtccatcaccaacattgta cccataatgagggctgcttttgaaacagaggaagcggagactgttcttactggagattgc aaagcagccaaactggccgacattgtgttcatcgttgatgagtctggaagtataggaccc ctcaacttccagctcgtgcgcagtttcctgcactcgattgtgaacggcctggaagtcagt ccatccagagtgcgagtcggcatcgtgatgtacaacacaacggccaccgcacaggtctac ctcaacaccttcaacaacaaggacgaattgctgaagtacatcaagatcctgccctatcaa ggaggcggcacgaacactggagaggccctgaagttcgccctggagaaggtcttcatcaag caaaaaggaagcaggaagggttctggtgtccagcaggtggcggtggtgatcacagacggt gaatcgcaggacgacgtaagcacgccggcggctggccttcgtcgggccggtgtcactgtt tacgcagtaggagtcaaagatgccaaccatgcccaactggtggagatggcgtcttatcct ccgaaaaagcacaagttcatcgtggacagttttgccaagctgaaatctctggagcagagc ctgcagaaaagtctgtgccaaaacatcctccggtcagcaatatctgtcagaggaaatgcc atcaaagaaggctgcgtgcaaaaggatgaagcagacatcttcttcctcatcgatcaatca ggaagcatttaccccaacgacttcaaggacatgaagaagttcatgattgagtttctaaat accttccgcattgggccacaacatgtccgcataggggttgtgaaatacgcagattcccca gatttagagtttgatctgacagcacactcagatgtgaagagtttggagaatgccgtaaag gcaattagacaaataggaggcgggacagaaacaggaagagcactgacttccatggtccca cactatgatcgagcgctggtcacgcgtggtcacgaagtcccaaagtacctggtggtgatc actgatggaaagtccgttgatgaggtgaaggttcctgcagaacaggtgagggtgcaggga gtcactgtatacgccatcggggtgaaaagtgcagatccagtcgagctgcaagagatcgcc ggcgaccccaagaggactttctttgtcaatcattttgatgctctgacgccgatcaaggac gacattgtcaccgacatctgttctccagaggcctgcagagacatacagggcgacatcttt ttcctcactgacacctccgagagcatcgatgaggaagagtttcagaaaattaaagacttc atgaaatctgtcatcagtaagtcaaccatcggggagaacaaagtgcacgtcggtgtcatg cagttcagtaccagctacaatctggagtttcccctcaaccaatactacagcaaagttgac atttcgagagccattgatgatatgaagcagatgaatgaaggtacgagcacaggaaaggcg attaatgaggtttcaaggtatttcgatgcggccagaggagggcatcctgacatgaggcag aatctgatactgattacaaacggcttggcacaagacgaggtcaaagaacctgccttggct ctgaggaataagggagtggtggtctacaccatcggagtggtggacgccaacaccaaccaa ctgctggagatcagcggctcagcaaaaaggacgtacactgagtgggattttgatgctctg aaggacttggagaacgagttggccttggagctctgtacaaacacagactgtaagaagaca gaaaaagctgacattattttcctggtggacggctccaagagcataaccctagagaagttc agaagcatgcagaagttcatgtcgtccatggtgaaccaaaccatcgtcggcaaggatctg acgcgcttcggggtcatcctctactccaccgcccacaaatccgtgttcactctgaaacag tatagctccaaacgagaggtcctcaaagcaattcaagagctgaagcgcccgtccggagac acctacaccggcaaggctttgaagtactctttaccgttcttcaacaaagacaatggcggc cgggcggacctcaacgtgcctcagatcctcatggtgatcacggacggggatgccacagat ctctacagtctggtagagccgtctgtggctctgcgggaaaacaggatcagcgtcttcagt atcggagttgaaggagccaacaagacacagctggagatcatggccgggaacgactcctcc aaagttttctacgtggatagcttcaaggccctggagagtctgtacaagaacatttctcaa gtcctctgtgacaccaccaagcaagtttgtgagaaacagcaggccgacctggtcttcctg ctcgatcagtccggcagcatcaaacaggaggactacaccatcatgaagaagttcacctca gatctagtgagcagcttcaaagtgagtgagaatctagtgcgtgtcgggctcgcccagttc aacagcgagttccaggacgaatttgacctcaacaagttctacagccaggatgtcgtgaac aagaacatcttgagcatgacgcagaggggtggaggcactaatatcggacaggccctggac tccatcaggggttatttcgaggcgtcacgtggcagccgaagatctgccgggatctcccag aatctggtgctgatcacagacggggaatctgatgacgacgttgaggatgccgccgatcat ctccgggctctgtccatcgaggtgttcgctatcagcattggaaacgtccacgatctggag ctcctgcagatcacgggagcagcaaagaggctgttcaccgtgaacaacttcggcagcttg gataagatcaagcaatcggtggtcgagacaatctgcaaatccaaactttacaaagcaggt gagtag

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