Trematomus bernacchii (emerald rockcod): 117479967
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Entry
117479967 CDS
T09643
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117479967 (ddx39ab)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117479967 (ddx39ab)
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117479967 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117479967
NCBI-ProteinID:
XP_033982958
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAETDVDNELLDYEEDEEPQGAPESAVPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMSTVKCAVFFGGMAIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLALKNVKHFVLDECDKMLEQLDMRRDVQDIFKITPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLAQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagactgatgttgacaacgagctgctcgactacgaagaggatgaggagcctcag
ggagccccagagagcgccgtccccgcagggaagaaggaggtgaagggatcctacgtctcc
atccacagctccgggttcagggactttctgctcaaaccagagctgctgcgtgccatcatc
gactgcggttttgagcatccgtctgaagtccagcacgagtgcatcccacaagcgatcctg
ggcatggacatcctgtgccaagcgaagtccggtatgggaaagacggccgtgttcgtgctg
gccacgctgcagcagatcgaacctgttgacggacaggtctctgtgttagtcatgtgtcac
acgcgagagctggccttccagatcagcaaagagtacgagcgcttctcaaagtacatgtcc
acggtaaagtgcgccgtgttcttcggaggcatggccatcaagaaggacgaggacgtgctg
aagaagaactgccctcacatcgtggtgggaacgccgggccgaatcctcgctctcatccgg
aacaaaaccctcgcgctgaagaacgtcaagcacttcgttctggacgagtgcgacaaaatg
ttggagcagctcgacatgaggcgtgacgtccaggacatctttaagatcacaccccacgag
aagcaggtcatgatgttcagcgctactctgagcaaagagatccgacccgtctgccgcaag
ttcatgcaggaccccatggaggtgttcgttgacgacgagactaagctcacgctccacggc
ctggcgcagtactactgcaagctgaaggacagcgagaagaaccgcaaactgttcgacctg
ctcgacgtgctggagttcaaccaggtggtgatcttcgtcaagtcagtgcagcgctgcgtg
gctctggctcagctgctggtggagcaaaacttcccggccatcgccatccacagagggatg
gctcaggaggagaggctgtctcgctaccagcagtttaaggacttccagaggcggatcctg
gtcgccaccaacctgttcggcagagggatggacatcgagcgggtcaacatcgtcttcaac
tacgacatgccggaagattctgacacctatttgcacagggttgctcgtgccggtcgcttt
ggaaccaaaggtctggccatcaccttcgtttctgacgagaccgacgccaagactctgaac
gacgtgcaggaccgctttgaggtcaatgtggccgagctgccggacgagatcgacatctcc
tcttacatcgagcagtccagatga
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