Trematomus bernacchii (emerald rockcod): 117485342
Help
Entry
117485342 CDS
T09643
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
117485342 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117485342 (cngb1a)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117485342 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
117485342
NCBI-ProteinID:
XP_033989744
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MLPQPALRLDAGCDEVQNISIAQKESNLVLEDVEEDVEEDVEEDVEQDVEEDVEQDVEQD
VEQDVEEDVEEVVEEEKDENIDDKQNEKKLESRNAETQVDQSPDQSPPVIDSVKEEAEEA
GQDNVEERLQQHQLEEARVAEEIARMAAEEAVRQLEAEQSVKLVVETVPVCNEPLPNIQE
EENEEPKSLKEVSPAEEETPPPSTHVEPALEKKDLESPEQIIPQPESQPPETPPTVQVEA
AESECGVPEVCIPIKSFLLRFSLAAECLERGRKLMHDHNLALPTLSMPTPPLDLAMLTQE
LQQLSSQARQCCTRSGAQGLGGAPVLRVEDVDWEEGQETNLNIPQIITTLEPELSAPMSH
LSAAGEEDDAVMKADREDNEMRPPSSPGVGSVLLQERLLQLVQMFKGRAERQKERLLDLD
ESEEDSPPATPSKAPPPPPPPPPPPEDPPAEEDEDEDEDEKEEFFLPFDILGHPVKIPKL
PVMPDWLRAVAAYRFPSSIDQFTDLIYVIWLFFVVAAWNWNVWLIPVRWAFPYQTAANVH
LWLLADYTCDFIYITDILVFQPRLQFVRAGDIVCDKKDMRENYMKTERFKMDVLSLFPLE
ILYYFTGVNSLLRFPRMLKYMAFFEFNDRMEAVMKKAYIYRVIRTSTYLLYSLHINACLF
YVGSDYEGLGSTKWVYDGKGNAYIRCYYFAVKTLITIGGLPDPTTVFEIFFQLINYFVGV
FAFSIMIGQMRDVVGAATAGENYYRATMDSTMKYMNSYNIPAPVQNRIRTWYDYTWKSQG
MLDEQELLVQLPVKMRLDIAVDVNYAIISKVALFQGCDRQMMFDLLTRLKSVVYLPGDFV
CVKGEIGRQMYIIQQGAVQVVGGPDLQTVFVTIRAGAVFGEISLLAGGGGNRRTADVRAH
GFANLFILDKKDLAEILVHYPESQKLLRKKAKMMLSKDKKPEEKVKEVVPPRKETPKMFR
AALKMSQQQGLQGSFSALRKTFKTSEGTSEVSQLPPPSPVHRRCPIPRVTVQDGEDAVSE
TPSITIRMTPRLQGEETLSVEVPRNA
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctcagcctgctctgaggctggacgccggctgtgacgaggtgcagaacatcagc
atcgcgcagaaggagagcaatctggtgctggaggacgtggaagaggacgtggaagaggac
gtggaagaggacgtggaacaggacgtggaagaggacgtggaacaggacgtggaacaggac
gtggaacaggacgtggaagaggacgtggaagaggtagtggaagaggaaaaggacgagaac
attgacgacaagcagaatgagaagaagttggaaagcagaaacgcagagacccaggtggat
caatcccctgatcaatcccctccagtgatcgacagcgtcaaggaggaggctgaagaggcg
ggtcaggacaacgtggaggaaaggcttcagcagcaccagctggaggaggctcgcgtcgca
gaggagatcgccaggatggcagcggaggaggccgtccggcagctggaggcggagcagtcg
gttaaactcgttgtagagacagtgccagtgtgcaacgagccactacccaacatccaggag
gaggaaaacgaggaaccaaagagtctgaaggaggtcagtccagctgaagaagagactcct
cctccgtcaactcatgtggagccggcattggagaagaaagatctggaaagtcccgaacag
atcatcccacaaccagagtcacaacctccagaaaccccccccacagtccaggtcgaagct
gcagaaagtgaatgtggagttccagaggtttgtatcccgataaagagctttctgcttcgg
ttctcgctcgctgctgagtgcctggagcgcggcaggaagttgatgcacgaccataacctg
gccctccccacgctgtccatgccgaccccccctctggatctcgccatgctgacccaggag
ctgcagcagctttcctcacaggcgcggcagtgctgcacgagaagcggtgctcagggtttg
ggtggagctccagtgctgagggtggaggatgtggactgggaagaagggcaggaaacaaac
ctgaacatcccccaaattatcacaactctagaaccagagctcagcgcccctatgtcacac
ctcagcgctgcaggtgaggaagatgatgcagtgatgaaggccgatcgagaggacaatgag
atgcgtcctccgtcctcaccgggcgtgggcagcgtgttgcttcaggagcgtctgctgcag
ctggtccagatgttcaaaggtcgagcggagcgtcagaaggagcgtcttctggacctggac
gagtccgaggaggacagtcctccagccactccgagcaaagccccccctcctcctcctcct
cctccccctcctccagaggacccgcctgcagaagaagatgaagatgaagatgaagatgag
aaggaggagttttttctcccatttgacattttgggacatccggtgaaaatccccaaactt
cccgtgatgccggactggctccgagccgtcgctgcgtaccgcttcccctccagcatcgac
caattcaccgatctgatctatgtgatctggctgttcttcgtggtggcggcgtggaactgg
aacgtttggttgatcccggtgcgctgggcgttcccgtaccaaaccgccgctaacgtccac
ctgtggctgctggccgactacacctgcgacttcatctacatcaccgacatcctcgtcttc
cagccgcgcctgcagttcgtccgcgcaggagacatcgtgtgtgacaaaaaagacatgaga
gaaaactacatgaagacggagagatttaagatggacgtcctcagtctgtttcccctggag
attctttactatttcaccggagtgaactccctgctcagattccctcgtatgctgaagtac
atggctttctttgagttcaacgaccgaatggaggccgtgatgaagaaagcgtacatctac
agggtgatccggacctccacctacctgctatactctctgcacatcaacgcctgcctcttc
tacgtgggctccgactacgaaggactgggctcaaccaagtgggtctacgacggaaaaggc
aacgcttatatccgctgctattactttgcggtgaagacgttgatcaccatcggaggactg
ccggacccgaccaccgtcttcgagatcttcttccagctcatcaactacttcgtcggcgtc
tttgcgttttccatcatgatcgggcagatgagggatgtggtcggggcagcgacggccgga
gagaattactaccgagcgactatggacagcacgatgaagtacatgaactcttacaacatc
cccgcacccgtccagaaccgcatccgcacctggtacgattacacctggaagagccagggc
atgctggatgaacaggagctcctggtgcagcttcctgtaaagatgaggctggacatcgct
gtggacgtcaactacgccatcatcagtaaagtggccctgttccagggctgtgacagacag
atgatgttcgacttgctgacgagactcaaatctgtcgtctacctgcccggagacttcgtc
tgtgtgaagggggagatagggcgtcagatgtacatcatccagcagggggcggtgcaggtg
gtggggggtcctgacctgcagacagtattcgtcaccatcagagcgggcgctgtgttcggg
gagatcagtttgctggcgggaggcggtgggaaccggcgcacggccgacgtgagggcgcac
ggcttcgctaacctcttcatcctcgacaagaaggacctggcagagatcctggtgcactac
cccgagtcacagaaactcctccgcaagaaggccaagatgatgctgtccaaggacaagaag
ccagaagagaaggtcaaagaggtcgtcccgccccgaaaggaaacccccaaaatgttcagg
gcggcgctgaaaatgtcgcagcagcaaggactccagggatccttctccgctctgaggaag
accttcaaaacctctgaaggcacctcagaggtttctcagctgccccccccctccccggtt
caccggcgctgtccgatccctcgcgtcacggtgcaggacggagaggacgccgtgtcggag
acgccctccatcaccatccggatgaccccccggctgcagggcgaggagacgctgtctgtg
gaggtgcccaggaacgcctga
DBGET
integrated database retrieval system
