Trematomus bernacchii (emerald rockcod): 117491253
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Entry
117491253 CDS
T09643
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117491253 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117491253 (cnot1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117491253 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117491253 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117491253
NCBI-ProteinID:
XP_033997028
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSCSADLRGFATQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGLGQEQIDAFLKTLCRDFPQQRCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIIVQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNEGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLHIVVYGIQRGLGMETFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMESLSGMGSL
NLGGTATAHTQSMQGFPTSLSSAFSNPQSPAKAFPPLTNPNPNPSTPFGGIGSLSSQLPS
MDSGPLGTGIGSSIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRF
KNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALA
QVQSQQPGVPKAPQPGQPSTLVTTTTTTTTVAKTPTITRPTPSTFKKDVPPSINTTNIDT
LLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMK
RVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGH
WLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNP
WTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEEQLS
APKKEAKPPEEMLPVSTGGFLDFNQMPVLRPTGDFVPFAAPPSTPAVTTTPCTTTGPPTP
QFSYHDINVYALAGLAPHININVNISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKI
AMTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAA
ALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQ
EGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFL
AQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRD
GIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCL
IECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDER
SVSHVTEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHS
GISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDL
ITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEAT
NTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQ
TLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKY
LAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILS
AFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLS
ELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTG
AS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctggtggacaattta
actaagaaaaactatcgagccagccagcaagaaatacagcatattgtgaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcgaagccaaactttattgctactctgtgttacgccgttgacaatccccttcat
taccagaagagtttgaagccatcggcccacctattcactcaactgagtaaagttcttaag
ctcagcaaagtccaagaggtgatatttggacttgctttgctcaactcctgcagcgcagac
cttcgtggttttgccacgcagttcatcaagcagaaactccccgacctcctgcggtcatac
gttgacgcggatctcggaggaaaccaggaaggtggctttcaggacattgccatcgaggtc
ttgcatttactgctgtcccatctcctctttggccaaaaaggagccagtgggttagggcag
gagcagattgacgccttcctgaagacactctgccgagatttcccccagcagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctctcgcagaattcatgcaa
gaagtcggctatggcttctgtgctagtctggatgagtgcagaaacataatcgtccagtat
ggggtgagagaggtgacagccagccaggtggccagagtcctgggcatgatggctcgtacc
cactctggcctgactgatggtatccctctacagtccatctctgctccaggtagtggtatc
tggagcgatggcaaggataagaacgaaggctcgcaggcacacacgtggaatgtggaggtt
ctcatcgacgttgtgaaggaagtgaatcccaaccttaacttcaaagaggtgacctacgag
ctggaccatgcaggatttataatccgggacagtaaaggcctgcatatcgtggtgtacggc
attcagagggggttgggcatggagacgtttcctgttgatctgatctatcgaccatggaaa
cacgcagaaggacagctgtcattcattcagcactctctgatgagcccagaagtgttttcc
tttgccgactacccttgccacactgtggccatagacatccttaaggccccaccggaggat
gacaacagagagatcgccacctggaaaagtctggacctggtggagagcctgctgaggctg
tcggaggtgggccagtacgagcaggtgaagcagctgttcagctttcccatcaagcactgc
ccagacatgttggtgctggcattgctgcagatctccacttcctggcacacactgcgccat
gagctcatctccaccctgatgcctatcttcctaggcaaccaccctaactctgccatcatc
ctgcactacgcctggcacggacagggacagtctccctctatccgtcagcttattatgcat
tcaatggcagagtggtacatgaggggggagcagtatgaccaggccaagctgtcacgcatc
cttgatgtggcccaggacttaaagtctctgtcgatgttgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgtcgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgagagcacggggaaccttttatccaggcatgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggcaccagacaaggaccagcccaaaagt
gcccagctgccccctgagaccttagccaccatgctggcctgcctgcagtcctgtgcgggg
agcgtgtcccaggagctgtcagaaactatcctaaccatggttgccaactgcagcaatgta
atgaataaagcccggcaacctccaccgggggtgatgccaaagggacgggcccccagcacc
agcagcctggatgccatctcccctgtacagatggagtctctgtccggcatggggtccctg
aacctggggggcacagccaccgcccacactcagagcatgcagggcttcccaacctcactg
agctcagctttcagtaatccccagtccccggctaaagccttcccccccctcaccaacccc
aaccccaaccccagtacaccatttgggggcattgggagcctgtcctcgcagcttcctagc
atggactctggtcccctgggcacaggcattggctccagtattggctctagtctggggatg
ccgactgtgaacaccgacccatttgggaccaggaagatgagcacaccaggcctgaaccca
ccaacctttcagcagactgacctttctcaggtttggcccgaggcgaaccagcactttagt
aaggagattgacgacgaagcaaacagttacttccagcgcatctacaaccacccacctcat
ccaactatgtccgtggatgaagtactggaaatgctgcagaggttcaaggattcaaccatc
aagagggagcgagaggtgttcaactgcatgcttcggaacttgtttgaggagtacagattc
ttcccccagtacccagacaaggagctgcacatcactgcctgcctttttggtggcattatc
gagaagggtctcgtcacctacatggccctgggcttggccctccgatatgttcttgaagcc
ttaagaaaacccttcggatccaaaatgtattactttggaattgccgccctagataggttt
aaaaacagactaaaggactatcctcaatattgtcaacatctggcttcaattgcccacttc
ttgcaattcccccaccatttacaagagtgcgtgcagtatatcgagtatgggcaacagtca
cgggaccctccggtgaagatgcagggctccatcaccacgcctggaagtctggcactggca
caggtccagtcgcagcaacccggggtcccaaaagctccacagccaggccagcccagtact
ctggtcaccaccaccaccactacaaccactgtagccaagaccccgaccatcacaagaccc
acacccagcaccttcaagaaggatgtgccgccctctataaacacaaccaacattgacacc
ctgctggtggccaccgaccaaacagaacggattgtagagcctcccgagaatgtccaggag
aagattgcgttcatattcaacaacctctctcagtccaacatgacacaaaaggttgaagag
ttaaaggagactgtgaaggatgagtttatgccctgggtgtctcagtacctggtgatgaag
cgtgtcagcatcgagcccaacttccacggcctctactccaacttcctggacactctcaag
aacccggagtttgtcaagatggtcctcaatgagacctacagaaacatcaaggttctgttg
acatctgacaaggcagctgccaacttctctgatcgctcgctgctgaagaacctgggccac
tggttgggcatgatcacactggccaaaaacaagcctatcctatacacagatttggaggtc
aagtctctgctactggaagcgtatgtgaaaggccagcaggagctcctttatgtggttccg
tttgtggccaaagttttggagtccagtctgcgaagcatggtcttcagaccccagaacccc
tggaccatggccatcatgaatgttcttgcagagctgcatcaagaacatgacctcaagctg
aacctgaagtttgagattgaagttctgtgtaagaacttgtctttggacatcaacgacctg
aagccagggaccctgctgaaagacaaagacaagctgaagagtctggaggaacagctgtct
gcaccaaagaaagaggccaagcctccagaagagatgctgccagtttctaccggtggtttc
ctggactttaatcaaatgcctgttttgcgaccaacaggggactttgttcctttcgctgcc
cccccctcaactccagctgtcactaccaccccttgcacaaccaccggcccccccacccct
cagtttagttaccacgacatcaatgtgtatgccttggcaggcctggctccacacatcaat
ataaatgtcaacatctcgctgctgcaggcccatccccagctgaagcagtgtgtacggcag
tcggtggagcgtgctgttcaggagctggtacacccggtggttgaccgctctatcaaaata
gccatgacgacctgtgagcagatcatccggaaggactttgctttggattcggaggagtcc
cgcatgcgtgtggctgcccaccatatgatgaggaacctgactgctggcatggccatgatc
acctgccgagagcctctgctcatgagcatcgccaccaaccttaagaacagctttgctgct
gcgttaagggcaccaaccccacaacagagggaaatgatggaagaggctgcagccaggatt
gctcaagacaactgtgaattagcatgctgcttcattcagaaaacagctgtggagaaggct
ggccctgaaatggacaagagactagccacggagtttgagctgaggaagcatgcacgccaa
gaaggacggcggtactgtgatcctgttgttctgacgtaccaggctgaacgcatgccagaa
cagatcagactcaaggtgggaggcgtggacccgaagcagctggcagtgtatgaggagttt
gccaggaacgttccaggtttcttacccagtaatgatctctcccaacccactggcttcttg
gctcagcccatgaagcaacaagcgtgggccacggatgatgtagctcagatctacgacaag
tgcatggcagacttggagcaacaccttcatgccatccctccggccctcgccatgaacccc
ctgacccaggctctgcgcagcctgctggaggctgtggccctggccagaaactccagggat
ggcatcgctgcactcggccttctgcagaaggctgttgagggtctcctggatgctaccagt
ggagctgatgcagacttactgctccgctacagagagtgccacctgctggtgctcaaagcc
ctgcaggacggacgtgcctatggaccacagtggtgcaataagcagatcaccagatgtctg
attgaatgccgcgatgagtacaaatacaacgtggaggcggtggagcttttgatcaggaac
catcttgtgaatatgcagcagtacgacctgcacctggcacagtcgatggaaaacggactg
cactacatggcagtagcgtttgccatgcagttggtgaagctgctgctggtagatgagcgc
agcgtcagccatgtgacggaggcggacctcttccacacaattgagactttgatgaggacc
tgtgcacactccagagccaacgcacctgagggccttccccagctgatggatgtagttcgc
tccaactacgaggccatgattgaccgggctcacggaggaccgaacttcatgatgcactct
gggatctcccaggcgtcagaatatgacgaccctccgggcctgagggagaaggccgagtac
ctcctgagggagtgggtcaacctgtaccactcagcggctgctggcagggacagcaccaaa
gctttctctgcttttgttggacagatgcaccagcagggcatcctgaagacggatgacctg
atcacgaggttcttccggctttgcacagaaatgtgcgtggagataagttaccgggcacag
gctgagcagcagcacaacccagcagccagcgcagccatcatcagagcgaagtgttaccac
aacctggacgccttcgtcaggctcatcgccctgctggtcaaacactccggagaggccacc
aacacagtgaccaagatcaacctcctcaacaaggtgctgggtatcgtagtcggggtcctg
attcaggaccatgatgtccgtcagacagaattccagcagctgccgtaccaccgcattttc
atcatgctgttgttggagctcaacgctccagaacatgttctggagaccatcaactttcag
acgctcacggccttctgcaataccttccacatcctgagaccaaccaaagcgcccggcttt
gtgtacgcctggctggaactcatctcccaccgcatcttcatcgccaggatgctagcgcac
acaccgcagcagaagggatggcccatgtacgcacagctgctgattgatctcttcaagtac
ctggcccccttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggc
accctgcgagtgctactggtcctgctgcacgacttcccagagttcctgtgtgactaccat
tacggtttctgtgatgttatcccacccaactgcatccagctccgcaacctcatcctcagt
gccttcccacgcaacatgaggctcccggaccctttcacacccaacctcaaggtggacatg
ctgagtgagatcaacatcgcgccccgtatcctcaccaacttcacaggcgttatgccttcc
cagttcaagaaggacctggactcgtacctgaagactcggtcaccagtcaccttcttgtct
gagctgcgcagcaacctgcaggtgtctaacgagccaggaaaccgctacaacatccagctg
atcaacgcgctggtgttgtatgtgggcacacaggcaatcgctcacatccacaacaagggc
agcaccccctccatgagcaccatcacccactctgcacacatggacatcttccagaacctg
gccgtggacctggacactgaggggcgttacctgttcctgaacgcgatcgccaatcaactg
cgttacccaaacagccacacccactacttcagctgcaccatgctctacctgttcgctgag
gccaacaccgaggccatccaggagcagatcaccagggttctgttggagaggctgatagtg
aacaggcctcacccatgggggctcctcatcaccttcatcgagctgatcaagaaccctgcc
ttcaagttctggagccacgactttgtgcactgtgcccccgagattgaaaagctgttccag
tcagtagcccagtgctgcatgggacagaagcaggcccagcaggtgatggagggcaccggt
gccagctag
DBGET
integrated database retrieval system
