Trematomus bernacchii (emerald rockcod): 117496806
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Entry
117496806 CDS
T09643
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117496806 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117496806 (ttc37)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117496806 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_19
TPR_14
TPR_8
TPR_11
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
ChAPs
HAT_Syf1_CNRKL1_N
ARM_TT21_C
Fis1_TPR_C
ARM_TT21_N
TPR_15
DUF3856
YceG_bac
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
117496806
NCBI-ProteinID:
XP_034004466
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MSSKEVKAALKSARDAIKNKEFKEALKHCKAVLKLEKSNYNAWVFIGLAASELDQPDQSQ
TAYKKAVELEPEQLLAWQGLANLYVKTDQWDFQVELPNVYQKLVELYASSDKNKCYETIS
KLSDIYQSDKEYAKLAKVKLQLIQVKEEEGVDKKELLQLWQQLTKLLSDCLNGEEQDNEI
QQYIITAFEKAMVLMDPVPGEEHKKMSADYVKCLSKMPQEETKMKEACESMLSLYPNQSY
PLEVLCSHYLKAGVQDEGAVSCFSRLLDVAPNSGIGHLGLGTKALQEGRFKDAIRDLSQG
LKKMSSSTGWCSLAEAQFKMQRYSDSAMSCTQGLTLCVSGDKELRVKLLKLKLENLVRSG
GEGAADQALETFSQIPDAEKDPVLVALRGHAYLYQGQVDEALKVSSELVDSHPNLTQALV
LRGQAHLAQGKLQLAEESFLKAASQSPDCGEYYFLLGRLYWDMGEETRKDRSKTHTHLLK
AAKLDPNLGCVFRYLGHYYREVAKDPARARGCYKKAFEMDQDDAESGAASVDLSMEQDDM
DTALAILQSVIEKATPGSAKWAWMRRGLYYLKVGEYQQAVSDLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPASIYSVYQAAAIKQTLGKFREAVAEYLQITAQQDY
VPALKGLGECQLSLAKIVMEDCRDGGAIDLIQQAIQNLFRAVELRPDLSCLWKLLGDACT
AVSTVSPNRAQVLMPGPLAGLDPNTQSHTLNQAQTLKVGERCYARALKLMSEVPSLWYDL
GLNYYRQSSLTCPSDEDQNSSSLLLEKAKQCLKKAIMMDSGNHNYWNALGVISMSKGLEN
FALAQHCFIKSIQVEPNNVVAWTNLGTLYLKQNNIELAHEAFKIAQSLEPLYVNCWIGQA
LIAERVGSFDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSTLYRYNIVQMNAV
SAAQVALSKYTERIQSDPDAFIMLGYLNEHLQLKRQAVQAYKRAVELLQSMSSEEALAFA
LGSYGRALCTSGQSEEAVRVYSSTPLQELSDLAGLALSSCRAGLIPESISAYERALAVAS
SEKEKAYILTALALLQHRLGNLDSAKTLLFKCSMLKEPIPESLLCLCALGLVQSDATLSA
AALTELLKQGPASGSVIEQRCLLTCALLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKANGGAMAGHVACLSSMTLGKRALLYSGVNQLANGKHSGEDKHKNALKTMQR
AVMLCPDDPATWAGLMAACHTENTSCYLSGSAPCRRGLEQTLMSVVSEKVHNVEEIERPL
AQTLEGWVLQQAVTGLMLGGQLEQAEALCTQVLSVSPEHPAVMLSLRQVQCQRLLLAGGG
TVLSDSVLEQLNNTVMMNPTNLGGWHWLAEVYRSQGLLLQAVMAYRQSLQISSQLGLHGS
QVSTLLRLALLALGPSMAGVPGNDWTNMIVEATTEVLKLGSSSVALLFQALLHFVTKMAA
RETRRLLERLVYTQDLPVTVVQVASWYLLRHLHSKNDQELMNVLLQHAKKNRDQRLLDFD
SLLSSSSA
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtaaagaagtgaaagcagcactaaaaagtgccagagacgccatcaaaaacaaa
gagttcaaagaggctctaaagcactgcaaggctgttttgaaacttgagaagagcaattat
aatgcctgggtgttcatcggcttggcagctagtgaactcgatcaaccagatcagtcacag
accgcttataagaaagctgtggagctggagcctgagcagctgctggcatggcagggcttg
gcaaatctttatgtgaagacggatcagtgggacttccaagtggagctacctaacgtctat
cagaagcttgttgagctgtatgcaagctctgacaaaaataaatgttacgagaccatcagt
aagctgtccgatatctatcagtctgacaaagaatatgcaaagttggcaaaggttaagctg
cagctcattcaagtgaaggaggaagagggagtggacaagaaagagttactgcagctatgg
caacagctgaccaaactcctctcagactgcctcaatggggaagagcaggacaatgaaatt
caacaatatataatcacagcatttgaaaaggccatggttcttatggatcccgtcccagga
gaggaacacaaaaagatgtcagctgactatgtcaaatgtctttctaaaatgccacaggaa
gaaaccaaaatgaaagaggcatgtgagtccatgctctcgctctacccaaaccaaagctat
cctcttgaggtgctttgttctcattacctcaaagcaggtgttcaggatgagggtgcagtc
agctgtttctcccggctcctggatgtggcccctaacagtggaataggtcatctgggtctg
ggcaccaaagcactgcaagaagggaggtttaaagatgccatcagggacctttcacaaggg
ttgaagaaaatgagctccagcacaggatggtgcagtctggccgaggcgcagtttaaaatg
cagagatactcagacagtgctatgtcatgcacccaaggactgacgctgtgtgtttctgga
gacaaagagctgagggtcaaactgctcaagctgaagctagagaatctggtcaggagtgga
ggagagggggctgcagaccaggctttagagacattctcacagatccctgatgctgaaaaa
gaccctgttctcgtagcgcttagaggacatgcatacctttatcagggacaagttgacgaa
gcactcaaggtgtcctcagagctggtggactctcaccctaacctgacccaggcgctggtt
ctgagaggacaggcacatttggcccagggcaaacttcagctggcagaggagagtttccta
aaggcagcgagccagagcccagactgtggggagtattatttcttgctcggacgactctac
tgggacatgggagaagagacccgtaaagaccggagcaaaacacacacacatttgctcaaa
gctgcaaagttagacccaaacctcggttgtgttttccgctacctcggacattactaccgg
gaggtggcaaaggatcccgcgcgggcccgaggctgctataagaaagccttcgagatggac
caggatgatgccgagtctggagccgcctcagtggacctcagtatggagcaggacgacatg
gacactgccttagcaatccttcagtccgtgattgagaaagccactccaggctcggctaaa
tgggcgtggatgagacgagggctttactacctgaaggtcggagagtatcaacaagctgta
tctgacctgcaagcagctctgagagccgatcctgaggactgggtgtgttgggagtgttta
ggtgaagcctatttgaaccgccgcagcttcacagccgctctgaaggccttcggtaaagct
caccagctccaacccgcctccatttacagcgtctaccaggccgctgctatcaaacagaca
ctcggcaagttcagagaggcggtcgcagagtacctgcagatcacagcgcagcaggactat
gtgcctgctcttaaaggtcttggggagtgccaactgtctctggctaaaattgtgatggaa
gactgtagagacgggggggccattgatctcattcagcaagccatacagaacctcttcaga
gctgtggagctgcgtccagacctgtcctgtctgtggaagctgctgggagatgcttgcacc
gcagtcagcaccgtgtcgccaaacagagctcaggttttaatgccaggcccactcgctggt
ttagaccccaacacccagagccacacactgaaccaggcccagacactcaaagttggtgag
aggtgttatgcccgggctttgaagctgatgtctgaggttcccagcctttggtacgaccta
ggactgaactattaccgccagtccagcctgacctgcccctcagatgaagaccagaactcc
tcttctctgctcctggagaaggccaagcagtgtttaaaaaaggctatcatgatggacagt
gggaaccataactactggaatgccctgggagtgatttccatgagcaaaggtcttgagaac
ttcgctctggctcaacactgcttcatcaagtccattcaagttgaaccaaataatgttgtt
gcttggaccaaccttggcaccctgtatttaaagcaaaacaatatagagcttgctcacgag
gccttcaagattgcccagtccctggagccgctttacgtcaactgctggatcggacaggcg
ctgatagcagagagagtgggaagctttgacaccatggatctcttcagacacaccactgaa
ctcagcactcatatggagggagtgaaaggttatgcctactgggtatgttccactctgctg
gataagagcaacagagactcgacactgtaccgctacaacatagtccagatgaacgccgtc
tctgctgctcaggtggctctcagcaagtacacagagaggatccagtctgaccccgatgcc
ttcattatgctcggctacctgaatgagcatctgcagctgaagaggcaggccgtgcaggct
tacaaaagagctgttgaacttctccagtccatgtcctctgaagaagcgctggcctttgct
ctgggcagctatggccgtgcattatgcacctcagggcagtcggaggaggcggtgcgtgtt
tatagctccacccccctgcaggagctcagtgacctggctggtctggctctgtcctcctgc
agggccggactcatcccagagagcatcagcgcctatgaacgtgccttggctgtggcttcc
agtgagaaggagaaggcgtacatcctgacagctctggcgctgcttcagcaccggctgggg
aacctggactcagccaagactctgctgtttaaatgctcgatgctaaaggagccaatcccg
gagtctctgctgtgtttatgtgcgctgggattggtccaaagtgatgctacgctgagtgct
gctgccctgacggagctgctgaagcagggccccgcctctgggagtgtgatcgagcagcgg
tgtctgctcacctgcgccctgctcgccctgcaggggaactacagcgccgtgcaacgagag
gcttccagagctgtgcacagcaatcctggaaacccgtctctgtgggccctgctgtccaga
ctggttccacaatactacccaaggaaggcaaatggtggagcgatggctggtcatgttgcc
tgtctctccagtatgaccctaggaaagagagcgttgttgtacagtggagtgaaccagctg
gctaatgggaaacactctggagaggacaaacacaagaatgcactgaagactatgcagaga
gctgtgatgctttgtcctgatgatccagccacgtgggcgggattaatggctgcctgtcac
acagaaaacacttcctgttacctttcaggttctgctccttgcagacgaggactagagcaa
accctcatgtcagtggtttcagagaaagtgcataatgtggaggagatcgagcgccctctt
gcacagactctggaaggctgggtgctacaacaggcagtgactggcctcatgctgggagga
cagctggagcaggcagaagccctctgcacacaggtgctgagtgtttctccagagcacccg
gcagtgatgctgtccctgagacaggtgcagtgtcagcgtctccttttggccggtggtggt
actgtcctgtcagactccgtgctggagcaactaaacaacacagtgatgatgaaccccaca
aaccttgggggctggcattggctggccgaggtgtatcgtagccagggtctgctcctccag
gcggttatggcctacaggcagagtctgcagatctcctcacagctcggcctgcacggcagc
caggtttccactctgctgagactagccctgctggccctgggaccctcgatggcgggtgtc
ccaggaaacgactggacaaacatgatcgtggaagctaccactgaagtgttgaagctgggt
tcctcctctgtggccctccttttccaggccctgctccattttgtgaccaagatggctgct
agggaaaccaggcgtttgctggagaggctggtgtacactcaggacctcccagtgacggtg
gtgcaggtggccagctggtacctcctcagacacttgcatagcaaaaacgaccaggagcta
atgaatgtccttttacaacatgccaaaaagaacagagatcagagactgctcgactttgat
tcactgctttcctcttcgtcagcttga
DBGET
integrated database retrieval system
