Trematomus bernacchii (emerald rockcod): 117499050
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Entry
117499050 CDS
T09643
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117499050 (scn1lab)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117499050 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
Zip
PFF1_TM
Spem1
New_glue
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
117499050
NCBI-ProteinID:
XP_034007184
LinkDB
All DBs
Position
Unknown
AA seq
2026 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEQARRPRADRRVDSDDENGPKPNSDLEAGK
SLPFIYGDTPPRLVSTPLEDLDTFYSNQKTFIVLNRGKTIFRFNATPALYILSPFNPLRR
VAIRVLVHSIFSILIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRWPIGNNATNSSNVTADDTFF
RHSLLDINTMFVQNTTENDFNWTEYISDEANYYFLPGRRDALICGNGSGAGLCPEGFICM
KAGRNPDYDYTSFDSFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSF
YLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYS
ERGAPASESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGGRDKFHKSESEDSIKRTSF
RFSIDANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDE
HSTFEESDSRRGSLFLPRRLERRCSAVSQTSLGAPRFMLPANGKMHCAVDCNGVVSLVGG
TSVTTSPVGVLLPEGTTTDTELKKRRFRHPSMDYLDEPVARQRAMSVASILTNTMEELEE
SRQKCPPCWYRFSNTCLIWDCYPAWLKIKDVVCTVVMDPFVDLAITICIVLNTLFMAMEH
YPMTKEFDSVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGL
ANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGM
QLFGKSYKECVCKISESCVLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCL
IVFLMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVKSM
VRQFFQSLCFGGKGGKGGKGGKGSSLTEESKPLDELHSNGKDNCISNHTSVEITRDPSVV
YVTEGNGRPGGGLVIEIGVDTTGKYPMEECDYMSFIHNPTLTVTVPIAVGESDFENPNTE
DFSSDSSDMEGSKETLVFFQKIDTEPHPPSSSEGSTVDIRPPGDGVDSVELEPEESLEPE
ACFTEGCVSRFQCCQINEEEEHFKSWWTLRKTCFIIVEHTWFESFIIFMILLSSGALAFE
DIYIEQRRTIKTVLEYSDKVFTYIFILEMLLKWTAYGFVKYFTNAWCWLDFLIVDVSLVS
LVANFMGYSEITAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLSFW
LIFSIMGVNLFAGKYYYCVNTTNDQVFPIDVVNNKSECLNLVNDSARWRNVKINFDNVGA
GYLALLQVATFKGWMDIMYAAVDSRNLEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIG
VIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANEFQGCVFDFITK
QAFDIVIMILICLNMVTMMVETDDQTKEAALMLYRINLVFITLFTGECVLKMISLRHYYF
TIGWNIFDFVVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLL
FALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQI
TTSGGWDRLLAPILNKREPDCDSQMEHPGNNYKGNCGNPSVAIFFFVSYIIICFLIVVNM
YIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPGATQFMEYSKLSDFADALDPPLR
MPKPNMLQLISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSK
VSYEPITTTLRRKQEDIAALIIQRAFRRFLFFSTIKKASTLYKEKLKEGMRDPDKDVMVI
CKFSEMSTSEKTDMTPSTASPPSYNSVTKSDKDKYEKEIKGKDRKK
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggagcaggcccggagaccacgggcggaccgc
cgcgtcgacagcgatgatgagaacgggcccaagcccaacagcgacctggaggcggggaaa
tctctccccttcatctacggtgacacccctccccgcctggtgtccacccctctggaggac
ttggacaccttctacagcaatcagaagaccttcatagtattgaatcgcgggaagacaatc
ttccgtttcaacgccacgcctgccttgtacatcctaagccccttcaaccctctgaggagg
gtagccattagagttttagtacactcgattttcagcatattgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatcccccagaatgggccaagaatgtagagtac
acattcacagggatttacacctttgagtccctcataaagatcctggccaggggcttctgt
gtggggaagttcactttcctgcgggacccgtggaactggctggattttagtgtcatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccttgaaaactatatcagtcatcccaggcttgaagaccatcgtcggcgcc
ctcatccagtcggtgaaaaagctgtcggacgtcatgatcctcaccgtgttctgcctcagc
gtcttcgcgctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgtgtgcgc
tggccaatcggcaacaacgccaccaacagcagcaacgtcaccgccgacgacacgtttttc
cgccactccctgctggatatcaacaccatgtttgtgcagaacaccacggaaaacgacttc
aactggacagagtacatcagcgatgaggccaactactatttcctccctgggcgaagggat
gctctgatctgtgggaacggcagcggcgctgggctctgtccagagggctttatatgtatg
aaagccggccgtaaccccgactacgactacaccagcttcgactccttcagctgggccttc
ctgtccctgttcagacttatgacccaggactactgggaaaacctgtatcagcagactttg
cgcgcggcaggaaagccctacatgatcttcttcgtgctggtgatcttcctgggctccttc
tacctggtgaacctgatcctggccgtggtggccatggcgtacgacgagcagaaccaggcc
accatcgaggaggcgcagcagaaggaggaggagttccaggccatgctggagcagctgaag
agacagcaggaggaggctcaggttgccgcggcagcagccacggagagcggagagtacagc
gagaggggggccccggcctccgagtcctcctcggggacgtcaaagctcagctcgaagagc
gccaaggagcgacgcaacaggcggaagaagaggaagcagagggaggaggaggaggagagg
gggggccgcgacaagttccacaagtctgagtccgaggacagcatcaagagaaccagcttc
cgcttctccatcgacgccaacagactctcttatgagaagagatgctcctcgcccaaccag
tctctcctcagtatccgaggatccctcttctcccctcggaggaacagccgcgccagcctg
ttcagcttccggggccgggcacgcgacatgggctccgagaacgacttcgccgacgacgag
cacagcaccttcgaggagagcgacagccgccgggggtcgctcttcttgccgcggcgtctg
gagcgccgctgcagcgctgtgagccagaccagcctcggggcgccgcgcttcatgctgccc
gccaacgggaagatgcactgcgccgtggactgcaacggagtggtgtcgctggtcggagga
acttctgtcacaacctcgcctgtaggtgtcctgctgcctgagggcacaactacagataca
gagctgaagaaacgacgcttccgccatccatccatggattatttagacgaaccagtggca
aggcagagagccatgagcgtggccagtatcctcaccaacaccatggaagagcttgaagag
tcgagacagaaatgcccgccctgctggtatagattctccaacacctgtctgatctgggat
tgttacccagcatggctgaaaataaaagatgtggtctgcacggtggtcatggacccgttt
gtggatctggccatcacaatttgcatcgtcctcaacacccttttcatggccatggagcat
taccccatgacgaaagaatttgacagcgtgctctcagttggaaacctggtgttcactggc
atcttcacagcagagatgtgcttcaagatcatcgccctggatccctactactacttccag
gagggctggaacatctttgatgggatcatcgtgagtctgagtctgatggagctcggcttg
gccaacgtggaaggcctgtctgtgctcaggtccttcagattgctgagggtcttcaaactg
gccaagtcgtggcccactttgaacatgctgatcaagatcatcggtaactcggtgggcgct
ctggggaacctgactctggtgctggccatcatcgtcttcatcttcgccgtggtgggcatg
cagctgtttggcaagagctacaaggagtgcgtgtgcaagatttcggaaagctgcgtgctg
ccccgctggcacatgcacgacttctttcactcgttcctcatcgtgttccgggtgctgtgc
ggagagtggatcgagaccatgtgggactgcatggaggttgcggggcaaagcatgtgcctg
attgtgttcctgatggtcatggtcattggaaacctggtggtcttaaacctgttcctggct
ctcctcctgagctcgttcagcgccgacaacctggcagcgactgacgacgacagcgagatg
aacaacctgcagatcgccgtgggtcggatccagcggggcatcgcgtttgtcaaatccatg
gtgcgccagttctttcagagcctctgcttcggcggtaagggcggtaagggcggtaagggc
ggtaagggctccagcctgacagaggagagcaaaccgttagacgagctgcacagcaacggc
aaggacaactgcatctccaaccacacctcagtggagatcaccagagaccccagtgtggtg
tacgtgacagagggcaatggacggccaggaggggggctggtcattgagattggtgtggac
actacagggaagtacccgatggaggaatgtgactacatgtcatttattcataaccccacc
ctgacagtcacagtgcccatcgctgtgggcgagtcggactttgagaacccgaacacggaa
gatttcagcagcgactcgtcggacatggagggcagcaaagagaccctcgtcttcttccag
aagattgatacagagccccaccctccgagctcatcggaggggagcacggtggatatccgc
ccccctggagacggggtggattcggtggagctggagccggaggagtcgctggaaccagag
gcgtgcttcacagagggctgtgtgagcaggttccagtgctgccagatcaacgaggaggaa
gagcactttaagagctggtggacactcaggaaaacctgcttcatcatagtggagcacacc
tggtttgaatctttcatcatattcatgatcctgctcagcagcggagccctggcgtttgag
gacatttacatcgagcagcggaggaccatcaaaacggtgctggagtactcagacaaggtc
ttcacctacatcttcatcctggagatgctgctgaagtggacggcttacggcttcgtcaag
tatttcaccaacgcctggtgctggctcgacttcctcatcgtagacgtgtccctggtcagc
ctcgtggccaactttatgggctactcggagatcaccgccatcaaatctctgaggacactg
cgagccctgcggcccctcagggccctgtctcggtttgagggcatgagggtggtggtgaac
gcgctgctgggggccatcccctccatcatgaacgtgctgctggtgtgcctcagcttctgg
ctcatcttcagcatcatgggggtcaacctgttcgcagggaagtactactactgcgtcaac
accaccaacgaccaggtcttccccatcgatgtggtcaacaacaagagcgagtgcctgaac
ctggtgaacgacagcgcccgctggaggaacgtcaagatcaactttgacaacgtgggggcc
ggttacctggctctgctgcaagtggccacatttaagggttggatggacatcatgtacgca
gctgtggactctcggaatttggaggaccagcctgaatatgaagtgaacctctacatgtac
ctctactttgtcatcttcatcatcttcggctccttcttcaccctcaacctgttcattggt
gtcatcatcgacaacttcaaccagcagaagaaaaagtttggaggtcaggacatcttcatg
acagaagagcagaagaagtactacaacgccatgaagaagctgggctccaagaaaccacag
aaacccatcccccggcctgcaaacgagttccaaggctgcgtgttcgacttcatcacaaag
caggccttcgacatcgtcatcatgatcctcatctgcctcaacatggtgaccatgatggtg
gagacggacgaccagaccaaggaagccgccttaatgctctaccggatcaacctggtcttc
atcacgctcttcaccggggagtgtgtgctcaagatgatctccctgcgccactactacttc
accatcgggtggaatatattcgactttgtggtggtgatcctgtccattgtaggtatgttt
ttatccgaagtcatcgagaagtactttgtgtccccgacgctgttccgagtgatccgtctg
gccaggataggtcgcatcctgcgcctgatcaaaggtgccaaaggcatccggacccttctc
ttcgctttgatgatgtccctccccgccttgttcaacatcggactcctcctcttcctggtc
atgttcatctacgccatcttcggcatgtccaacttcgcctacgtgaagcgagaggcgggg
atcgacgacatgttcaacttcgagacgttcgggaacagcatgatctgtctgtttcagatc
accacgtcaggggggtgggacaggctgctggcccccatcctgaacaagagggagcccgac
tgtgacagccagatggagcacccgggcaacaactacaaaggtaactgcggcaacccgtcg
gtggccatcttcttcttcgtcagctacatcatcatctgcttcctcatcgtggtcaacatg
tacatcgccgtcatcctggagaacttcagcgtggccacggaggagagcgccgagccgctg
agcgaggatgacttcgagatgttctacgaggtgtgggagcgcttcgaccccggcgccact
cagttcatggagtacagcaagctgtcggacttcgccgacgccctggacccgccgctgcgc
atgcccaaacccaacatgctccagctgatctccatggacctacccatggtgagcggcgag
cgcatccactgcctggacatcctgttcgccttcaccaagcgcgtgctgggcgagagcggc
gagatggacgtgctgcgcgggcagatggaggagcgcttcatggcctccaacccctccaag
gtgtcctacgagcccatcaccaccacgctgcgccgcaaacaggaggacatagcggcgctc
atcatccagagagccttccgccgcttcctgttcttcagcaccataaagaaggcctccacc
ctctacaaggagaagctgaaggagggcatgcgggaccccgacaaggacgtcatggtcatc
tgcaagttcagcgagatgtccacctcggagaaaacggacatgacgccctccacggcctcc
ccgccctcctacaacagcgtgaccaagtcggacaaggacaaatacgagaaggaaatcaaa
gggaaggaccggaaaaaataa
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integrated database retrieval system
