KEGG   Trypanosoma brucei gambiense: TbgDal_VI2950
Entry
TbgDal_VI2950     CDS       T06526                                 
Name
(RefSeq) splicing factor 3a, putative
  KO
K12827  splicing factor 3A subunit 3
Organism
tbg  Trypanosoma brucei gambiense
Pathway
tbg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tbg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TbgDal_VI2950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tbg03041]
    TbgDal_VI2950
Spliceosome [BR:tbg03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    TbgDal_VI2950
 Complex B
    TbgDal_VI2950
 Complex C
   U2 SnRNP specific factors
    TbgDal_VI2950
SSDB
Motif
Pfam: SF3a60_Prp9_C SF3A3 PolC_DP2_central SF3a60_bindingd
Other DBs
NCBI-GeneID: 23861944
NCBI-ProteinID: XP_011774102
UniProt: C9ZQY7
LinkDB
Position
6:711476..713104
AA seq 542 aa
MFGGVLEKIRLFEADIERHIDSIVQQLLIEDISNKRHQLLRDYFIIQQAEAVEPIAEKLL
DIYLDQDDIVSAQEAPAEGEAVYSNALKEFEARIADIREYHRTFRDVPTVKCELDLPDVN
ALDNVFTLAERYGSCLDLEAHYHRYSNFMLSTSKRALETNHTVGTAWPGRVEYLTFVTSV
INIILNDVDPYRKVYGFWSYKEFVEELLKYLVHFHKRVLVMEGDVLESTLAKCDADAEEF
WSKLVEHKKSVVTISSTAVALPGTAGKSVSSLHAPAPLRRYVKAFALWPITYVESVTPSE
IEKPPSLEEVKAVVHIEAKIVVLLQTLLFEHLQETEKILLRDYSKTVEELEWERDNMQAE
FLRSVEEAKKRCATTVEGSVVQAAQHEVAVAFAPEEGKEVPTANGVLAPGTKAGDTNDQL
LDSDGKPVARWLVCLQQLHKRFYCEVCGGTVYIGPKVFKDHFGAERHAEGLRRLGVTLHL
KNYEGISSIRKVIEMRDKVMGNSRSLRKRIHADQEDEEMQDAQGNVITAGAYRKFQMSRK
TG
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgtttggtggagttttagaaaagattcggctttttgaagctgacattgagcgtcacatc
gacagcattgtacagcaactactcattgaggatatctcgaacaaacgtcatcagcttctt
cgagattactttataatacaacaagctgaggctgttgaacccattgctgagaaactattg
gatatttatcttgatcaggacgatattgtgtcagcccaggaggctccggcggagggtgaa
gcagtttacagcaatgcgctgaaggagtttgaggctcgcatcgctgacatccgggagtat
caccgaacctttagagacgttcctacggtgaagtgtgagcttgatctacccgatgtgaat
gcacttgataacgtttttacactcgcagagaggtatggcagttgccttgacctggaggcc
cattatcatcggtacagcaactttatgctttcgaccagcaaacgggcacttgaaacaaat
cacacggtggggactgcatggcctggtcgggttgagtatcttacctttgtgaccagtgtt
ataaacataatactcaatgatgtggacccttatcgcaaggtatatggcttctggtcttat
aaggaattcgtggaggagttgctcaaatacctggttcattttcacaaacgtgtactggta
atggaaggtgatgtacttgaatcaacactcgccaagtgcgatgcggacgctgaggaattc
tggtcgaagcttgtggagcataagaaatctgtagtaaccattagtagcacagctgtggcg
ttaccggggacagctgggaagtctgtatcctcgctgcatgcccctgcaccactgcgaagg
tatgtgaaggcatttgcactgtggcccataacttacgtggaatccgttacaccttctgag
attgagaagccaccttcactcgaagaagtcaaggctgtggtgcacattgaggcaaaaatc
gttgtcttgcttcaaactcttttgttcgaacacctgcaagagacagaaaagattcttctg
cgtgattacagtaaaacagtggaggaactggagtgggagagggataacatgcaggcggag
ttccttcgatctgtagaggaggcaaaaaagagatgcgccaccactgttgaaggaagtgtt
gtacaggctgcccaacatgaggttgctgttgccttcgcccccgaggagggtaaagaggtt
cccacagctaatggcgttttagcacccgggacgaaggcgggcgataccaacgaccaacta
ctcgatagtgacgggaaaccagttgcacggtggctggtgtgtttgcagcaactgcataag
agattttactgcgaggtatgtggtggaactgtatatattggtcccaaggtgttcaaggac
cacttcggtgcggagagacatgcggaagggttgcgacgacttggtgttactcttcacttg
aagaattatgaaggtatttcgtccatacgtaaggtaattgagatgcgggataaagtgatg
ggaaacagtcgtagtctacgaaagcgcattcatgctgatcaggaagatgaagaaatgcaa
gatgcccagggaaacgtgattaccgcgggtgcttacagaaagtttcagatgtcgaggaaa
acaggttga

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