Thermobispora bispora: Tbis_1087
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Entry
Tbis_1087 CDS
T01236
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tbi
Thermobispora bispora
Pathway
tbi00040
Pentose and glucuronate interconversions
tbi01100
Metabolic pathways
tbi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
tbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Tbis_1087
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Tbis_1087
Enzymes [BR:
tbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Tbis_1087
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ADG87809
UniProt:
D6Y7Z0
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All DBs
Position
complement(1233754..1235064)
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AA seq
436 aa
AA seq
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MRARAVLLPAAIAVTVAAMSAPAAQAADEHDPLRPGSKAWRLGHETLPPNDGWASANGGT
TGGSGAPRENIHVVTDRDGLAAALAAPGPRIIYVKGVIDTGKTCADYVRNGYSLEAYLAA
YDPEVWGRDREPSGPLEEARAASAAAQAADIVLRVPSDTTIVGLPGAVIRHLNLRVDQAR
NVIIRNIRFEDAADCFPQWDPTDGPEGNWNSAYDSISVTRSTNVWIDHNTFTDGDNPDSA
QPHYFGRPYQVHDGQLDITNGSDLVTVSWNVFADHDKTMLIGSTDNPANDAGKLNVTVHH
NRFTNTLQRLPRVRFGKVHVYNNSYEIPDPGTFVYALGVGVQSQIYAERNHFHLGKGVNP
ATLLHDWGGTALTARENVARIDGRLQPIDLIGVYNAANDPDLGTDAGWTPTRYTKIDPAP
SVAAKVAAHAGAGRLL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcacgagccgtcctcctgccggccgccatcgcggtcaccgtggcggccatgagc
gcgccggccgcccaggccgccgatgagcacgacccgctccggccgggcagcaaggcctgg
cggctcggccacgagaccctgcccccgaacgacggctgggcctcggcgaacggcggcacg
accggtggatccggcgcgccccgggagaacatccacgtggtcacggaccgggacgggctc
gccgccgccctcgccgcgcccgggccgcggatcatctacgtcaagggcgtgatcgacacc
ggcaagacctgcgcggactacgtccggaacgggtactccctcgaggcctacctcgccgcc
tacgacccggaggtctgggggcgggaccgggaaccgtccgggccgctcgaggaggcgcgg
gccgcctccgcggccgcgcaggccgcggacatcgtgctgcgggtgccctcggacaccacg
atcgtcggcctgcccggcgcggtgatccggcacctcaacctgcgcgtggaccaggcgcgc
aacgtgatcatccggaacatccggttcgaggacgccgcggactgcttcccccagtgggac
ccgaccgacggcccggagggcaactggaactcggcctacgacagcatctcggtgacccgg
tccaccaacgtgtggatcgaccacaacacgttcaccgacggcgacaaccccgactcggcc
cagccgcactacttcggccggccgtaccaggtgcacgacggccagctcgacatcaccaac
gggtcggacctcgtgacggtgtcatggaacgtcttcgccgaccatgacaagaccatgctg
atcggctcgaccgacaaccccgcgaacgacgccggcaagctcaacgtgaccgtgcaccac
aaccggttcacgaacacgctccagcggctgccgcgcgtccgcttcggcaaggtccacgtc
tacaacaactcctacgagatccccgacccgggcacgttcgtctacgcgctcggcgtgggc
gtccagtcgcagatctacgccgagcggaaccacttccacctgggcaagggcgtgaacccg
gccacgctgctccacgactggggtgggaccgcgctcaccgcccgggagaacgtggcgcgc
atcgacggcaggctccagccgatcgacctgatcggcgtctacaacgcggcgaacgacccc
gacctcggcaccgacgccggctggacgccgacccggtacaccaagatcgacccggcgccg
tccgtcgccgcgaaggtcgccgcccacgcgggcgccggccgcctgctctga
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