Thermobispora bispora: Tbis_2338
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Entry
Tbis_2338 CDS
T01236
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tbi
Thermobispora bispora
Pathway
tbi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tbis_2338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbi03400
]
Tbis_2338
Enzymes [BR:
tbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tbis_2338
DNA repair and recombination proteins [BR:
tbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tbis_2338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ADG89047
UniProt:
D6Y3U5
LinkDB
All DBs
Position
complement(2721213..2722178)
Genome browser
AA seq
321 aa
AA seq
DB search
MGRLPAYAPMLARPGALPEPDEAYAHEMKWDGVRALAYIEDGRLRLVSRNGLDITAAYPE
THGLAGAVGGHDLVLDGEIVAFDRQGRPSFEALQPRIHQRDPLRVARLSVTSPVTYLLFD
LLHIDATPVIGLPYAERRALLEEIVRGGERWDVPPCYHGAGPRAVAESRRLGLEGVVAKR
LASPYRPGRRSPDWVKVKNFRTQDVVVCGWKPGGGRRSGTIGSLLVGVQTADGLRYAGHV
GTGFTEAALRDLAQRLAPLERRGHPFAEEPPREEVRDARWVEPVLVGEVRYTEWTGEGRL
RHPSWRGLRADKRPDEVVRED
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgggccggttgcccgcctacgcgcccatgctcgcgcggccgggtgcgctgccggagccg
gacgaggcgtacgcccacgagatgaagtgggacggcgtccgcgcgctcgcctacatcgag
gacggccggcttcggctggtctcgcgcaacgggctcgacatcaccgccgcctacccggag
acgcacggcctcgccggcgcggtgggcgggcacgacctggtgctcgacggggagatcgtc
gccttcgaccggcaagggaggccgtcgttcgaggcgctgcagccgaggatccaccagcgg
gacccgctgcgggtcgcccggctctcggtcacctcacccgtgacgtacctgctcttcgac
ctgctccacatcgacgccacgccggtgatcggcctgccgtacgcggagcgccgggcgctg
ctggaggagatcgtgcggggcggggagcgctgggacgtgcccccgtgctaccacggcgcg
ggcccgcgcgcggtcgcggagtcccgccggctcggcctggagggggtggtggccaagcgg
ctcgcctcgccgtaccggccgggccggcgctcgcccgactgggtgaaggtgaagaacttc
cgcacccaggacgtggtcgtgtgcgggtggaagccgggcggcggccggcggagcgggacg
atcggctcgctgctcgtcggggtccagacggccgacggcctgcggtacgcgggccacgtc
ggcacggggttcaccgaggccgcgctgcgcgacctggcgcagcggctggcgccgctcgag
cggcgcggccaccccttcgccgaggaaccgccgcgggaggaggtgcgcgacgcccgctgg
gtcgagccggtgctggtcggcgaggtccggtacacggagtggaccggtgagggcaggctg
cggcacccctcctggcgcgggctccgggcggacaagcgcccggacgaggtggtccgggag
gactga
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