Theobroma cacao (cacao): 18605343
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Entry
18605343 CDS
T02994
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18605343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18605343
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18605343
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18605343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
18605343
NCBI-ProteinID:
XP_017972591
UniProt:
A0AB32W187
LinkDB
All DBs
Position
3:complement(27330445..27351314)
Genome browser
AA seq
2290 aa
AA seq
DB search
MLPFSSLLSSHIRFLLQSLDDSNFSQVLRKLRQTVEYGIEGSILLVQTCLDHMNLLGEDM
QKKQYMLDLFSAVFSCLLDQPNFSTVFCEAFRNLIISKKFLRDFCNELQLSVFEKVALGL
ALADSENAEVRTTGQDFSIGLIEELCGNPASVDSVEEIQNVSLFLYQSEGLIKYVDSLMQ
MVALKYPKERTPLILVPWLKDDVKEDRLPRNLDMFQSCNENDFDFLLVEMESETSMADIM
REVGYRCTTDSTHCKEVLSNFLPLNEVTLSRILSTVARTYTGLKDSQLSHSIFCSAIGSS
AAFDKSCPGSWNVDVLVDSIKQLAPGTNWNSVMEHLDHEGFYIPNSQAFSIFMSIYACAC
QDPFPLHAVCGSAWKNVDGQLSFLRYAVSAPLEIFTFEHSVRKLAYVEACDHHKLQAIQG
NHAWLSLDLFDVLCQLAERGCANSVQAIIEYPLKHCPEVLLLGIAQINTAYNLLQHDVSS
TIFPIVVEKSMGSLILHLWHSNSKFVARGFMDMIKADESIIIGMLAICHEQKILSTFLEQ
IPFSFSIRLAAFASQKEYLCLEKWLNDNLIANKDIFVEECLKFWKEISLDAAEDMSPDLF
HYPSTVENIYSKTSSTFLKVFQANIEQITSDHLAKELKRLNRASMHFKPQLQNVGTSDSS
ISCGYANDIEAEAGSYLYQMFSGQMPITVMIQMLSQFKKSSKKREQLIFEHVIQNLLDEY
RFFPRYPEKQLNIVAILFGSLIKHRLVTKLRLVVGLNSVLDALCKPTDSKIFLFGTKALE
QFLDRLVELPQYCSHILQISHLHGTHPELVDFVELALARISSSSLGKDEENTYVPHDGFT
AATSESSEMQQRYEEVLGDRIKTSMTSSICMKPDLPQSVHPSSGFVNDVASCQNTVSSQK
AMAVTPNASDFLNSSRRVTSTRFGSALNIETLIAADEKRNTPLKTPASNVQDKIFFMINN
ISSSNVDAKVKKFTEILNEQYYPWFAQYMVMRRASIEPNFHDLYLEFLKKVNSKILNEEI
VKAAYDNCKVILRSEHIRSSSEERSLLKNLGSWLGKFTVGRNQVLRAREIDPKALIIEAY
ERGLMIAVIPFTSKILEPCRSSRAYKPPNPWTMAILGLLAEIYALPNLKMNLKFDIEVLF
KNLGVDMKKANPTSLLKNRLRKVEGNPDFSNKDVGASQPPVVTEINSEIKSTLNKVYLQH
EIFNTSHSDDQLELASRIADIGSQIIFNEELSTLGLHHLLRVVPIAMERAIKELLSLVVQ
RIVLIAIQTTKEVVLKDYAMESDETCIYEAAHSMVASLAGSLAHVTCKETLRTSISRQLR
DSFQGLNAPNEHLEQAVALVINDNLDLGCAVIEHAAVQKALQTIDCEITQQLSVRRKPRE
GIDPSYYDANINAQGPMTVTTESPLLRPGHISHSQQQVYEEFVHVFRKNQAGQNSNVVHA
SSAAPGQLNRGSCLSGMDGVNYPLDLISEEIDANRPVANQSSLSSLSPTAAASEVHSEEV
SYARKFRTELRATAESLPTTPIDQLGSGILEPSLSMSDVLEKYQIISQKLEILLTKESVE
EEIDRVVFQIPKIILKCVSRDEAALAIAQKVFKSLYEKASSSSHVGFHISILAAIRDVCK
LVVKEVTSWVIYSDEDRKFNTNIIVGLMHKGLLNLAEYNKHMAKLIDAGKNKTATEFAIS
LLETLLIQESSLTLSELPNLINSLAKLAARPGSPESLKKLLEIAKNPPESASSPSGNTVG
KEDRTKHARGKKNSDYSMTSRDGNVNTESVSADLASFYDQVSVLFTEWYQTYILPGANDA
ACAYFVSKLQQNGFLNGGDVSDRFFRFLMGHSVAHCLSSERIGSSLSLQSPQTAQDLSFL
AVDAYARLVVVILKYQATEHLLSKIFQLTVKVIKRNAEEKKASFNPRPYFRLFVNWLFDL
VSPYAVLDAANFQVLIAFAETFHAFQPLKVPAFSFAWLELISHKHFMPKLLTVNAPKGWV
YGQLLLVDLLKFMEPYLRNAKLEKAIKHLYEETLKVLFVLLRDFPEFLVSYHFSFCDVIP
SSCIQMRSIILSAYPCNMQLPDTSTPNLKIDLLQEMHIPPCVFSEVDAALGAKQMKNDVD
EYLKTGWQASPFLSELKEKLLLPQDEAAQAGTRYDVPVINSRVLYVGMQIIQQSQKKTTP
SLAQQMTCNDRMQLYAMGPVLALFQTLIMDLDTEGRYLVLNAIANQLRYPNSHTHLYSFV
MLYLFNEAKQEIIQEQITRVLLERCVVNPHPWGLLTTIIELIKNPQYNFWNRAFIKCNPD
VNILLKSISI
NT seq
6873 nt
NT seq
+upstream
nt +downstream
nt
atgctaccattttcgtcgctgctttctagccatattcggttcttgctacagagtctagac
gactccaatttcagtcaggttcttcgcaagctccgtcagactgttgaatatgggatcgag
ggaagcatcttgctggtacagacatgcttggatcacatgaatcttctaggggaagatatg
caaaaaaagcaatatatgttggacctattttctgcagtattcagttgtctattagaccaa
ccaaattttagcactgtgttttgtgaagcattcagaaacttgattatcagcaaaaaattc
cttagggatttttgcaatgaattgcaattgtcagtctttgagaaagttgcccttggtctt
gctttggcagactcagagaatgctgaggtcagaactactggtcaggactttagcattgga
ttgatagaggagttatgcggaaatcctgcctctgttgattctgttgaggagattcagaat
gtaagtctgttcttgtatcagtcagagggcctaatcaagtatgtggactcccttatgcaa
atggtggctctgaagtatccaaaagagaggacccctcttatattagttccgtggctcaaa
gatgatgtaaaggaggataggcttccaaggaatttggatatgtttcaaagttgcaatgaa
aatgactttgatttccttctggtggagatggagagtgagactagcatggctgatataatg
agagaagttggatatagatgtacaactgattctacacattgcaaagaggttttgtcaaat
ttcttacctttgaatgaagttactctctctagaatacttagcactgttgcccgtacgtat
actggccttaaggacagtcaactttcacattcaattttctgctctgcaattggtagcagt
gctgcatttgataaatcatgcccaggctcttggaatgtggacgttttggtggattcaatt
aagcaacttgctcctggaaccaactggaatagtgtcatggaacatctggatcatgaggga
ttttacattcctaacagccaagcattttcaattttcatgtcaatttatgcatgtgcatgt
caggatcctttccctcttcatgctgtatgcggctctgcctggaagaatgttgatggtcaa
ttatcttttctaagatatgctgtatcagccccacttgagatttttacctttgaacattct
gtcaggaagctagcatatgttgaagcgtgtgatcaccataagcttcaagccatacaagga
aaccatgcatggttatcccttgacctgtttgacgtgttgtgtcaattagctgagaggggc
tgtgccaattccgttcaagcaattattgagtaccctctcaaacactgccctgaagtatta
ctccttggaattgctcaaattaatactgcttacaacctcctccagcatgatgtttcttcc
accattttccccatagttgttgaaaaatctatgggtagcttgattcttcatctttggcat
tctaattccaagtttgtggcacgtggtttcatggacatgattaaagctgatgaaagcatc
ataattggaatgttggccatttgccatgaacagaagattttatcaactttcttggagcaa
attccattttctttcagtattcgactggctgcgtttgcttcccaaaaagaatacttgtgt
ctggagaagtggttgaatgataatctgattgctaataaagacatttttgttgaggaatgc
ctaaagttttggaaggagatttctttagatgcagcagaagatatgtcccctgatttgttt
cattatcctagcactgttgagaatatatattccaagacaagttcaacctttctaaaggtt
tttcaagctaatattgaacagatcacttctgaccaccttgctaaagaattgaaaagattg
aatagagcttctatgcatttcaagcctcaacttcagaatgttggaacttctgattcatca
atttcttgtggatatgctaatgatatagaggctgaagcaggttcttatttgtatcagatg
ttttctggtcagatgcctatcactgttatgattcaaatgctttcacaattcaagaaatct
tcaaagaaaagggaacaattgatttttgagcatgtgatacaaaatttgttggatgagtac
aggttcttccctaggtatccagaaaagcagcttaatattgtcgctatcctttttggttct
ttaataaaacatcggcttgtaactaaactcagacttgttgttggtttgaatagtgtgcta
gatgcattgtgtaagcccacagactcaaagatatttttgtttggaaccaaagctttagag
cagtttctggaccgtttggttgagttgccacagtattgcagtcatattttgcaaatatct
catttgcatggaactcatccggagcttgttgattttgttgaacttgcacttgctaggatt
tcgtcaagttccttgggaaaagatgaagagaacacttacgttccccatgatggttttact
gcagctacttcagaaagttcagagatgcaacagagatatgaagaagttctaggtgataga
atcaagacatctatgacttcaagcatttgcatgaaaccagatttacctcaatctgtccac
ccttcaagtggcttcgtgaatgatgtagctagctgtcagaatactgtgtcatcacaaaag
gcaatggcagttacacccaatgcttctgattttcttaattcttctaggagagttacttca
actaggtttggttctgctctaaatattgaaacacttattgcagcagatgagaagaggaat
actcctctcaagactcctgcatccaatgttcaggataagatatttttcatgattaataat
atttcctcatcaaatgttgatgctaaagtgaagaaatttactgagattcttaatgagcaa
tattatccatggtttgcccagtacatggtgatgagaagagcaagcatcgagccgaatttt
catgacttgtacttggagtttctgaagaaagtcaattcaaaaatattgaatgaagagatt
gtcaaggctgcatatgataattgcaaggttattttgagatctgagcatataaggtcaagc
tcagaagagcgttccttgctgaaaaatttaggtagttggcttgggaagttcactgttggc
agaaatcaagtactaagggcccgagaaatagatcccaaagctttaataatagaggcatat
gagaggggcttgatgatagctgtgattccatttacctcaaagatattggaaccatgccga
agtagtcgtgcttacaagcctccaaatccttggactatggcaattcttggtttacttgca
gagatctatgcattgccaaatctaaaaatgaatctcaaattcgatattgaggttctattt
aagaaccttggtgtagatatgaagaaagctaacccaacatctcttctgaaaaatcgtctt
cgtaaagtagaaggaaatcctgatttttccaacaaagatgttggggcatctcagccgcca
gtggttactgaaattaactctgaaatcaagtctacactgaataaagtttatctacagcat
gagatattcaatacatctcattctgacgaccaattagagctggcttcacgaatcgcagat
attggaagtcaaattattttcaatgaagaactcagcactttgggcttgcatcatttgcta
agagttgtccctattgctatggagagggctatcaaagaactcctgtctctggtggttcaa
cgcattgttctcatagcaatccagacaacaaaggaagttgttctaaaggactatgctatg
gaatcagatgaaacctgcatatatgaggctgcgcattcaatggtagctagtctggctgga
agtctagctcatgtgacatgcaaggaaactcttcgtacttcaatatcacgtcaactaagg
gattcatttcagggtttgaatgctcccaatgaacatcttgaacaagctgttgctcttgtt
atcaatgataaccttgatttggggtgtgcagtaattgaacatgctgcagttcagaaggca
ttacaaaccatcgactgtgaaattactcagcaactttctgtaagaaggaagcctagagag
ggtattgatccttcatattatgatgcaaacattaatgcacaaggtcctatgactgttaca
acagagtccccactcctcagaccagggcacatatcgcactcacaacagcaagtatatgag
gagtttgttcatgtcttccggaaaaatcaagctggtcagaactcaaatgtggtgcatgct
tcatctgctgctccaggacagcttaaccgaggctcgtgcttatctgggatggatggagtt
aattatcccttggatctcatttctgaggagattgacgctaaccggcctgttgcaaaccaa
agttccctcagttctttgtccccaactgctgctgcctctgaagtgcattctgaggaggtg
tcctatgccagaaaatttagaactgaattgagagctactgcagaatcattgcctacaact
cccattgatcaactgggaagtggaatcttggaaccctcattatctatgtcagatgtactg
gaaaaatatcaaataatttcccagaagttggagattttgttgactaaagagtctgtagag
gaagagattgatagagttgttttccagattccaaagatcatacttaaatgtgttagtcga
gatgaggcagcccttgcaattgctcagaaggttttcaaaagtttatatgagaaagcttca
agcagttcgcatgtcggttttcatatttcaattctggctgctattcgtgatgtttgcaag
cttgttgtcaaggaggttactagttgggtgatttattcggatgaggataggaagttcaat
acgaatataattgttggccttatgcacaagggtttgcttaatcttgctgaatacaacaag
catatggcaaagctcattgatgctggaaagaataaaactgcaacagagtttgcaatttct
ctcctcgaaaccttgttgattcaggaatcaagtctaactttgtcagaacttcccaatctt
attaattccttggcaaagcttgcagcaagacctggatctcctgaatcattaaaaaaattg
cttgagattgcaaagaatcctccagaaagtgcttcaagcccttctggtaatactgttggc
aaggaggacaggaccaagcatgctagaggaaaaaagaactctgattattccatgacaagt
agggatggcaatgtcaatactgaatctgtatcagcagatcttgctagtttttatgaccag
gtttctgtgctgttcactgaatggtaccaaacatatatacttcctggtgcaaatgatgca
gcttgtgcatattttgtctcaaaattgcagcaaaatggatttctaaatggtggtgatgtg
tcagatcgtttttttcgatttctcatggggcactctgttgcccattgtctctcttctgag
agaattggttctagtttgtcattgcagtctcctcaaactgcacaggatctctcatttctt
gcagttgatgcgtatgcaaggcttgtcgttgtgattctgaagtatcaggcaacggagcat
cttttgtcaaagatttttcaattgactgttaaggtgattaagaggaatgctgaggagaag
aaggcatcttttaacccaaggccatatttcaggctgtttgttaactggctttttgacctt
gtttcaccatatgcggtcttagatgctgccaactttcaggttttgattgcttttgcagag
actttccatgcatttcagcctcttaaagttcccgctttcagctttgcatggcttgagttg
ataagtcataagcacttcatgccgaaattgctcacagtcaatgctccaaaaggttgggtt
tatggtcagcttctgctggttgatttgctcaaattcatggagccttatttgaggaatgcc
aaacttgaaaaggcgattaaacatctatacgaagaaacgttaaaagtgctgtttgtgttg
ctgcgtgatttcccagagtttctggttagttatcacttcagcttctgtgacgtaattcct
tcaagctgcattcagatgcgaagtattatccttagtgcctatccatgcaatatgcagctg
cctgacacttctacaccaaacttaaagattgatttattgcaggagatgcacataccacca
tgtgtattttctgaggttgatgcagccctaggagctaagcagatgaaaaatgatgtagat
gagtatcttaagacaggatggcaggcatctccattcttatcagagctgaaagagaaatta
ctgctgccacaggatgaggcagcacaagctgggacccgatacgatgtgcctgtaataaac
tcccgcgtcctgtatgttggaatgcagatcatccagcaatcacagaaaaagaccacacct
agccttgcacaacagatgacctgcaatgatcgcatgcaattgtatgcgatgggtcctgtt
ttagctcttttccaaacgttgataatggacctggatacagaagggcgctaccttgtcctt
aatgcgattgcaaatcagctccgctacccaaacagccacacacacctctattcttttgtc
atgctgtacttgtttaatgaagcaaaacaggaaatcattcaggagcagataacaagagtg
ttgttggagcgctgtgttgttaatcctcatccgtggggtcttctgaccacgattattgag
ctcatcaagaatcctcaatacaacttctggaatcgagcttttatcaagtgtaacccagat
gtgaacattctcttgaaatcaatttcaatctaa
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integrated database retrieval system
