Theobroma cacao (cacao): 18614385
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Entry
18614385 CDS
T02994
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18614385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18614385
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18614385
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18614385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Pox_J1
Motif
Other DBs
NCBI-GeneID:
18614385
NCBI-ProteinID:
XP_007052185
UniProt:
A0AB32VP85
LinkDB
All DBs
Position
1:complement(35809147..35827429)
Genome browser
AA seq
2413 aa
AA seq
DB search
MLELSSTLSTHVRFLLQSLTEANADSISRELFQFIEYGIEGSILVLQTCLDCLNSHKTDA
KNLQSDQVVAAIFRHTMDKPNFCTVFCQSLRSTDISEEFLLNFSKTMQLSVSEKIGIGLA
LSDSENPDTRMCGKNFCMAQIEELHANSASFDSSEQIQNIVMFLQSSDALSKHVDSFMQM
LSLVQAKDVAQFVLTPILSDELRGANFLRNMDFFNESGENDFDALLAEMEKEMSMGDIIK
ELGYGCTVDAARCKDILSLCLPLTEMTISRILGTIAHTYVGLEDNPTAFSTFCLALGCST
SSELPPLCSWNIDVLIKTIKQLAPGTNWIRVIENLDHEGFYIPNEAAFSFFMSVYRHASQ
EPFPLHAICGSVWKNIEGQLSFLKYAVSALPEVFTFAHSLRQLAYMDAVHGHKLHLGNAN
HAWLCLDLLDILCQLAERGHTSFVRSMLDYPLKHCPEVLLLGMAHINTAYNLLQHDVTYT
VFPMIIKNALGAGVILQLWHVNPNLVLRGFVEVHNTEPDSMIRILEICQELKILSSVLEM
IPFPSGIRLAVLASQKEVLDLENWLGGNLNTYKDVFFEECLKFLKEIQFGGSQEFSAKPF
HHTTAVLNLYLEASSTFFKVLKANTGMIASTQLLEEMERLHAMIMDSNPKLQNGGTTDSS
TSDGYGDDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSVKREQSIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKQQLVTHLTLGIALRGVLDALRKPADSKMFLFGTKALE
QFVDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISSGHLESDGSNNPSVQHQVS
SQVTSGNGELNSSTIAQPGSQLSSPLKLQRHDSSLDDRNKLPATSSNDVKPLLSSVGQPS
VASLSDASSIHKLQNAVSGSSMLSASPGFVRPSRGVTSTRFGSALNIETLVAAAERRETP
IEAPASEIQDKISFIINNISAANIEAKGKEFNEILKEQYYPWFAEYMVMKRASIEPNFHD
LYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEI
YSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGACQPQMV
AEVKSGIISPLNHVELPLEVASPPNSGGHTHLLSQYAGPLRLSSGALMEDEKLAALGLSD
QLPSAQGLFQATPSQSPFSVNQLSAAIPNIGTHVIINQKLSALGLHLHFQRVVPIAMDRA
IKEIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRSSLQGLNVASDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAN
QLALRRKHRDPSFFDPSMYGQGSMGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSGQ
SSHSMSAGPSSLSGDGGLTGTFGSTSGQVTPGYASSQGNLGQLDVASEAIESTSAALLSA
SSIHIGSAAGLTQQTTENDPLNASFSSTISAPELHSVDTTDAVKELGPTAQPLPSPAATD
RLGSTISETSLSTRDALDKYQIVAQKLETSVTSDSREVDIQGVISEVPEIILRCVSRDEA
ALAVAQKVFKGLYENASNSLNVSAHLAILAAVRDVCKLAVKELTSWVIYSDEERKFNKDI
TVGLIRSELLNLAEYNVHMAKLIDGGRNKAAMEFAMSLLQTLVTDESRVISELHNLVDAL
AKVVPKPGSPESLQQLIEMIRNPSASAAALSSATAGKEDKARQSRDKKVPGHTSANRDDN
SNVENLEPDPAGFKEQVSMLFAEWYQICEIPGANDGPCNHYIVQLHQNGLLKGDDMTERF
FRIITELSVSHCLSSEVMSSGTLQSPQQAQTLSFLAIDIYAKLVLSILKYCPVEQGSSKL
FLMSKILTVTLRFIQKDAEDKKASFNPRPYFRLFINWLSDLGCLDPVTDGASFQILIAFA
NAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWAYIQRLLVDLLQFLEPFLRN
AELGVPVQCLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR
LPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTRPQGGSSFLTELKQ
RLLLSPSEAASAGTHYNVPLINSLVLYVGMQAIQQLQSRGSHAQSTGNTVPLSVFLVSAA
LDIFQSLIGELDTEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAESNQEIIQEQITRV
LLERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPVD
ESMVSGWVSDSAH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagctttcctcgacactgtcgactcacgttcggttcctactccagtccctgacc
gaagccaacgctgactccatttctcgagagctctttcagttcattgaatatgggatcgag
ggaagcattctggtgttgcaaacctgcttggattgcttgaattctcacaagacggatgca
aagaacttgcaatctgaccaagttgtagcagcaatttttagacataccatggacaagcca
aatttttgtactgtcttctgtcagtcactaagaagtacagatatcagtgaggaattcctg
ctgaatttctcaaaaactatgcagttatctgtgtctgaaaaaattggcattggtcttgct
ttgtctgattctgaaaatcctgacacaagaatgtgcgggaagaatttctgtatggctcag
attgaggaattgcatgctaattcggcttctttcgattcttccgagcaaattcagaatatt
gttatgttcctccagagctctgacgccctttccaagcatgtagattcctttatgcagatg
ttatctttagtgcaagcgaaagatgtcgcgcagtttgttttaactccaatactttcagat
gaattgcgtggggctaatttcttaaggaatatggatttcttcaatgaatctggagaaaat
gattttgatgctcttttagcagaaatggagaaggagatgagcatgggagatataattaag
gaactaggttatggttgcactgttgatgctgcacgctgtaaagatattttatctctttgc
ttacctctgacagagatgaccatatctagaatactgggcacaattgcccacacctatgtt
gggcttgaggataacccaacggcattttctacattttgcctggccctaggttgcagcact
tcatctgagttgcctccattgtgctcctggaacattgatgttcttataaaaactataaag
caacttgctcccggtaccaactggattcgagttattgaaaacctggatcatgaggggttc
tacattcctaatgaggcggcattctcctttttcatgtctgtatatcgacatgcatcccag
gaaccctttcctctccatgccatttgtgggtctgtatggaagaatattgaaggtcagcta
tcttttctaaaatatgctgtatcagcactgccagaagtatttacctttgcccattctttg
aggcagctggcctatatggatgccgtgcatggccataagcttcaccttggaaatgcaaat
catgcctggttgtgtcttgacctcttagatatactgtgtcaactagctgaaaggggtcat
acaagctttgttcgatcaatgcttgattatcctttaaaacactgccccgaagtcctgctt
cttgggatggcacatattaatacggcttataatctcctccagcatgatgtgacttacaca
gtttttccaatgatcattaaaaatgccctgggtgcgggtgtgatacttcaactttggcac
gtgaaccctaatcttgtcttgcgtggatttgtagaagtacacaacactgagccagacagc
atgattagaattctggaaatttgtcaagagttaaagattctatcatcggtgttggagatg
ataccttttccttctggcatcagattagcagtccttgcttctcagaaagaggttctagat
cttgagaattggttgggtggtaacctgaatacatataaagatgttttttttgaggagtgc
ctaaagttcctgaaggagatacaattcggtggatcacaagagttttctgccaaacctttc
catcatactactgctgttttaaatctttatttggaagctagttctacctttttcaaggtc
cttaaagctaatactgggatgatagcctctactcagcttctcgaggaaatggaaaggttg
catgcaatgattatggattctaatccaaagctgcaaaatggtgggaccacagattcctca
acctctgacggatatggagatgatatcgaggcagaagcaaactcttactttcatcaaatg
ttttctggtcagttgaccattgattcaatggttcaaatgcttgcacggttcaaggaatct
tctgtgaaaagggaacagtcgatatttgagtgcatgattgcaaatctgtttgaagaatac
cgatttttccccaagtatcctgaaagacagctcaaaatcgctgcagttctctttggctct
gttatcaagcagcagcttgtaactcacctcacccttggaattgccttgcgtggtgttcta
gatgcattgcgtaaacctgcagattcaaaaatgtttttgtttggaaccaaggctttggag
cagtttgtggatcgcctgattgagtggccgcagtattgcaaccatattttacagatatct
cacctgcgtgccactcattcagagcttgttgctttcattgaacgagctcttgccaggatt
tcgtcagggcacttggaatcagatgggagcaacaacccctctgttcaacaccaagtttcc
tctcaggtgacctcaggaaacggggagttaaatagctctaccattgctcagcctgggtca
cagctttcttctccgcttaagcttcagaggcatgatagttctcttgatgaccgtaataaa
ctccctgcgacatcatctaatgatgtgaaaccacttctatcttctgtagggcagccttca
gttgcttccttgagtgatgcttctagcattcataaactgcagaatgcagtcagtggttcg
tctatgctgtctgcttcccctggttttgttcgtccttctcgaggagttacttctactaga
tttggctctgctttaaacattgaaacactagtggccgctgctgagagaagagagactccc
attgaggctccagcatcagagattcaagacaagatatcattcataattaataatatttct
gctgccaatattgaagctaaagggaaagagttcaatgaaattttgaaagagcagtactat
ccctggtttgcagaatatatggttatgaaaagagcaagcattgaaccaaactttcatgat
ttgtatttgaagtttcttgacaaagttaattcaaaggctttgaataaggagattgtccaa
gctacatatgagaactgcaaggttttgttgggatcagagcttataaaatcaagctctgag
gagcggtcattgctaaaaaatttgggtagttggcttgggaagttaactattggccggaat
caagttttgagggcccgtgaaatagatcccaaatctctgattatagaggcatatgagaag
ggtttgatgattgcagttattccatttacttcaaagattcttgagccatgtcaaagcagt
ctggcatatcaaccccctaatccctggaccatgggcattctggcgttactggctgagatt
tattcaatgccaaacttgaaaatgaacctcaagtttgacatagaggtactattcaagaac
cttggtgtggatatgaaggacataacacctacttctcttctcaaggatcgcaaaagagaa
attgaggggaatcctgatttttccaataaagatgttggagcttgccagccccagatggtt
gccgaagttaaatcaggaataatttctccacttaatcatgttgaactacctcttgaggtt
gctagtccacctaattctggtggccacacacatttattatctcagtatgctggtcccttg
cgtctttcttctggtgcattgatggaggatgagaaactagcagctttaggcttgtctgat
cagcttccttctgcacaagggctatttcaagccactccatcacagtcacctttttctgtt
aatcagctttctgcggcaatacctaacattggaactcatgttattatcaatcagaagctc
agtgctttgggcttgcacttgcattttcagagggtggttccaattgcaatggacagagcc
atcaaggagattgtggctggtattgttcagcgcagtgtttctattgcaactcagacaaca
aaggagcttgttttaaaggattatgctatggaatcagatgagacacggatctataacgca
gcacacttgatggttgcaagtttggccggaagtctagctcacgtaacatgcaaggaaccc
ttacgtggctctatatcaagtcaactaaggagttcacttcagggtttgaatgttgcgagt
gatcttctggaacaagctgttcagcttgttactaatgataaccttgatcttggctgtgcg
gtcattgaacaggctgctactgataaggcaatacaaaccattgatggagaaatagctaat
caacttgccttaagaagaaagcatagggatccctcattttttgatccaagcatgtatgga
caaggttctatgggtgttgtgcctgaggctcttcgacctaaaccaggtcacttgtctctg
tctcagcagcgagtttatgaggactttgttcggcttccttggcaaaatcagtctggtcag
agctcacattctatgtctgctggtccttcaagcttatctggtgatggtggtctcactggc
acatttggttcaacatcagggcaagttacccctggttacgcatccagccaaggaaacttg
ggacaattggatgttgcttctgaggcaattgaatctacctcagctgcccttttgagtgct
tcctcaattcatattggctcagcagctggtcttacccagcagactactgaaaacgatcct
ctcaatgcttctttctcttctacaatttcagcccctgaattacattcagtggatactact
gatgctgtaaaagaattgggacctacagcacaaccattaccttcacctgctgccactgac
cgtttaggaagtaccatctctgaaacttcactgagcacaagggatgcattggataaatat
cagattgttgctcagaagttggaaacttcggtgacaagcgattctagagaagttgacatt
cagggagtgatctctgaggtacctgaaatcatactcagatgtgtaagtcgggacgaggct
gcattggctgtggctcaaaaggttttcaagggcttatatgagaatgcatcaaacagtctt
aatgttagtgcccatcttgctattctggctgctgtccgtgatgtctgcaagcttgctgtt
aaggagcttactagttgggtgatatattcagacgaggagcgaaagttcaacaaagatatc
acagttggccttattcgaagtgaattgctgaaccttgcggagtacaatgttcatatggca
aaacttattgatggaggaaggaataaagctgcgatggaatttgcgatgtcccttcttcaa
actttggtcactgatgaatccagagtcatctcagagctccataatcttgtggatgcgctg
gctaaggttgtgccaaaacctggatctcctgaatcattgcaacagttgatcgagatgatc
agaaatccttctgctagtgcggctgctttatctagtgccactgctggaaaggaggataag
gctaggcaatctagagacaaaaaggtacctgggcacacatcggctaatagggatgataat
agtaatgtggagaatctagaaccagatcctgctggcttcaaggagcaggtttccatgctg
tttgcagaatggtaccagatatgtgagattcctggtgcaaatgatggaccttgtaatcat
tacattgtgcaattgcatcaaaatggactgctcaaaggggatgatatgacagaacgcttt
tttcgcattatcacagaactttctgtctcacattgcctatcttctgaggttatgagttct
ggcacattgcaatcacctcagcaggctcagactctttctttccttgccattgatatttat
gcaaaacttgtgttgtcaatccttaagtattgcccagtggaacagggatcgagtaaactc
tttcttatgtccaagattttgaccgtgactctgagatttattcaaaaagatgcagaggat
aagaaagcatcttttaatccaagaccatatttcagattatttatcaactggctgtcagat
cttgggtgcctggaccctgtcactgatggtgcaagttttcagattttgatagcctttgcc
aatgcatttcatgcattgcagccccttaaagttcctgccttcagctttgcatggctagag
ctggtcagtcacaggagtttcatgccaaaattgctcactggaaatgctcagaagggttgg
gcatatatacaacgcttgctggtggacttgcttcagttccttgagccatttttaaggaat
gctgagcttggagtgccggttcagtgtctgtataaaggcacacttagggtgctgctagtg
ctgcttcacgactttcctgaattcctgtgtgattatcattttaccttctgtgatgtgatt
cctccaagctgcatacagatgcggaatattatccttagtgcatttccacgtaatatgagg
ctgccagatccatctacaccaaacttaaagattgacttgcttccagaaatcagagaaccc
ccccgcatcctctctgaggtggatgctgctcttaaagcaaaacagatgaaggccgatgta
gatgagtatctcaagacaaggccacaaggaggatcttcatttcttactgaactgaaacaa
agactgctcctttcaccaagcgaggcagcatctgctggtacccattataatgtaccatta
atcaactctctggtgctttatgttggaatgcaggccattcagcaactgcagtcaagagga
tctcatgcacagtcaacaggaaacactgttccattgtctgtgttcttggttagtgctgcc
ttggatattttccagagtctaataggggaacttgatactgaggggcgatacctttttctt
aatgcaattgctaaccaattgcgatatccaaacaaccatacacattacttctccttcatc
ttactatacttatttgccgaatcaaatcaggaaattattcaagagcaaattacaagagtt
ctgttggaacggctaattgttaacaaacctcatccatggggtctgctcattaccttcatt
gagctcataaagaatccaagatacaacttctggaatcgatcatttattaggtgtgcacct
gagattgaaaaactctttgaatctgtcgcaagatcatgtgggggcctgaaacctgtggac
gagagcatggtttctggttgggtatctgacagcgcgcactga
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integrated database retrieval system
