Tigriopus californicus (tidepool copepod): 131891135
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Entry
131891135 CDS
T09700
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131891135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131891135
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131891135
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131891135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
131891135
NCBI-ProteinID:
XP_059096635
LinkDB
All DBs
Position
11:14628476..14640701
Genome browser
AA seq
2636 aa
AA seq
DB search
MSLDAQCLARAKIVQLVSSLTTLHPSGNHRNNKNSSSNHAISTSSPAVVNRVLAELSSTY
QRFGTDLEGFALQSLLQECHVAVGAKNPSSKPSLALQVLSQVCATFWNRSHFASAWCGAL
QEASIKPNSPFLTHFAQNLKLSPLSELVYLLALSRSPDQSWKEAATSRFQARLTDYVQKF
ESDTPLDSILEIESSPGLVQILLDLAGSRLISTEVRTQIRDGLHSLKQVSPETSGPTCEL
ALETTSSIIIESRDLMMSSGGPSSVPPPSNLELALPGLLGEIGYQFTSKLDSCRAQLMRM
LGSPNKITASVVARIIGIMIRTHTGLDDSLTLQNMNATGTSIWEKDKNEPKTWNMEVFIK
AIHELQSTLHWNEITLELDHPGFVVKDRQGLILLIEALNLGFKVQGLHRPFPVDSFYRIW
KHTEGQVSLFQQILVNPDIFNFTDYVYHSVAVNLLKVQPDFSNIDTASWRSLELLDTLLS
LAEHGHDQAVRDMFQFPKTHCPDVLTLGLIQINPPLTNFRTEILAQMLQVFFNHHQNSQV
ILSYAWGSDLKLKGLMVLSMADWYSKAQMDGDNEQARLSRVLDIAQDLKALTMLLNAKKV
PFVIDLAVLASRREFLNLEKWINDQIREHGEAFIKASIQFLHRKLPSLSSSNHPAAGPLK
EEQLVKANFSLESLVTILACLQNVMRQVTHLHSDLKDAIVSMLQMSQPLVANPRPNQQLP
PPPAAPASIMRPPHSHVDSGGGAGPAGSIGSPIRPTPRQGGFPMNPNDPLMNITSQFNNM
HLPPSSVASSSSSFSLGSSSLGPLVSGGGAVGPGGSPSRIFGGGPSSMPPPTSMESAAAS
GNANSPSPFSGMPPMPIASGSSSAQLAPGASSGGGGPPGGPPGGVMDRPGGINLFGEGVG
GGPGGGPGGGPGGGGNQIPREIEDEANSYFQRIYNHQLSIDEVLDLLKRFQESANHREKE
VFQCMIKNLFEEYKFFPQYPEKELHITAQLFGGIIEHGLVTLVPLGLALRFVLDAIRKPT
SSNMYYFGVAALDRFKMRLKDYPQYCQHITGIDHFKDFPPHLIEWVECGVQSNVPPDKPA
GPVLPAHIEETIKLQSAGLASAPPTAAPTAATTTTSASASSGAVGSGPSSSSSGPQGNKQ
PLPTSTVAPMTSTVASSSTIARPTVTTVGGRPSIANTTNIDTLLNARQKAVALAIPSEKI
QDKVAFIFNNLSLMNMSQKSRELMEHLGEEYFGWLAQYLVMKRASIEPNFHSLYANFLET
LHKEELYNCVLRETFGNIQILLGSDKAIANFSDRSLLKNLGHWLGLMTLHRNRPILMVDL
DLKPLIIEAYHNGQQELLYVIPFVAKVLESCAKSRVFKPPCPWTMGIMNLLAELNQEHDL
KLNLKFEIDVLCRTLTLKLANLNPGTLLKDYDKLNRMLNFNNFGMSQPPITSSGPPKSSM
ENSFVQAHRKLDHPPMPQNMGMDMAPMMPSGGPFGPPSHSMLSQHQPGAAGAGLGRALIA
GPTANLGMMGSSASAMNESVTSGVTASSAGSTGETLLPTSQSQATAHLSSNVTQSAAAAM
AASMPVPSQNKPLEPKFHFMDIDTSSLNGIVSQITVDPRLTLLKEQPDFAQLVKLSIEKS
IQEWASPVIDRAMKIALTTSEQLIKKDFALDHDEARMRSSAHSVVRNLMAGMAMITCRDH
LNNSIKTHMKSFMASLGTNLTPQQQELIDATANQIAADNVELACAFIQKKAIEKALPEID
KRLKSEYDSRILAKKEGRRYCDPVALAYQNEQMPEAIRIKPGQVIPAQRAVYDEYARHIP
GFKPLSEREAAAITPRTPSVAETPAGNVASSVAGPQPGPQAGAGGGPPRPMGANTPEQTP
DECIGILDEVFNKIKGFVENCTHLPTNPHMTNLRGLLECMGRARQSKDPQNVVTLVQKAV
ENLLEGLIAQNEPTQIETEALARYRDANLLIFRAIADSRAFGQAWTNAKVTQFLIEAKEE
LRYNLDAVNSLIQFSFINLQEYDKYLAASMENGANVLATKFAMRICHVYLIEDRSNAQII
ESDLFGTIEVLQKISSSSQMPPDGLSNLMEMIKMSSERLEQNLALSGPTGQLHSGIVQAK
EFEDPPGLLEKTEFLLREWVNAYHSREAGKDSRQAFIVFVQLMNQHGILKTDDLITRFFR
MSTQMCVDLCYRALGEQHNSPTLVRAKCFHTLDAYVRLITLLVKHSGETQNTITKVNLLN
KVLGIVAGVLLIDHDVRNVEFQQVPYHRIFIMLFLELNSPDQILETINFQVLTAYYHMLH
ILSPSKAPGFAYAWLEIVSHRVFMGRMLASISQQKGWPMYSQLLVDLFKFLSPFLRNAEL
AKPVHRLYRGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPD
PFTPNLKVEMLADIAIAPRAVTNYAAMIKPSFRKELDHYLKNRTPVSFLSDVRENLLVGN
GDIPGNRYNIQLINALVMHVGTCAIQHIRAKGQTPNMSTIAHSSHMDIFQNLAVNLETEG
RYLFLNCIANQLRYPNSHTHYFSCTLLYLFSEANTEAIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNPSFSFWQHEFVTCAPEIQKLFESVARSCMVPRMADGTNVSNNNAAD
NT seq
7911 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggatgcccaatgtttggctcgagccaaaatcgtccaactggtgtccagtttg
acaacgcttcacccaagtggaaatcatcgcaacaataagaatagtagttccaaccacgcg
atatcgacttcctctccagctgtcgtgaaccgtgttttggccgaattgtcaagtacttat
caacgttttgggaccgatctcgaaggattcgcccttcaaagccttctccaagagtgtcac
gtcgctgttggcgccaaaaacccgtcatccaagccatcgcttgcccttcaggtccttagc
caagtgtgtgccaccttttggaaccgttcccattttgccagtgcctggtgtggcgccctt
caagaggcttcgatcaaacccaactctccatttttgactcatttcgcgcagaacttgaag
ctctcgcctttgagcgaactcgtctacttattggctctttcgcggagtccggatcagtct
tggaaagaggcggccacgtcgcgattccaagcccgactgactgactacgttcaaaaattt
gaatccgacacaccccttgattcgatcctagagatcgagagctcgcctggacttgttcaa
atcctgctcgatctcgctggttctcgtctcatctccactgaagtcagaacccagatccga
gacggattgcattccttgaagcaagtctcgcccgagacttccggtccaacctgtgagttg
gccctcgagacaacctcctcgatcatcatcgagtccagagacctcatgatgtcctccggg
ggtccgtcctcggtcccaccgccttccaatttggaactggccctccccggcttgctcggg
gagatcgggtatcagttcacgagcaagctggactcatgtcgggctcaactgatgcgtatg
ttgggctcgcccaacaaaatcacagcctcggtcgtggcccggatcattgggatcatgatc
cggacccacacgggtctggatgactcgctgacccttcagaacatgaacgccacaggcacg
tccatatgggagaaagacaagaacgaacccaagacgtggaacatggaggtgttcatcaaa
gccatccacgagctccagtctactctgcattggaacgagatcaccctcgaattggaccac
cctggatttgtggtcaaggatcgccagggtttgatcctgttgattgaggccctgaatctg
ggcttcaaagttcaaggccttcatcggccctttcccgtggactccttctaccgaatttgg
aaacataccgaaggccaagtgtctctcttccagcaaatcttggtcaatccagacatcttc
aatttcacggattacgtctaccattccgtggctgtgaatctcctgaaggtccagccggat
ttcagcaacatcgacacagcctcgtggcgatccctggagctcttggacaccctattgtcc
ttggccgaacacggtcacgatcaggctgtccgagacatgttccagttccccaagacccat
tgcccggatgtgctcaccctgggcctgattcagatcaatcctcccctgaccaacttccgg
accgagatcctggcccagatgcttcaggtgttcttcaaccaccaccagaactcccaagtg
attctcagctacgcttggggttcggacctcaagctcaagggactcatggttctgtccatg
gccgattggtattccaaggcccagatggacggtgacaacgagcaagcccgtctctcacgt
gtgcttgacattgcccaagacttgaaggctctcacgatgctcttgaacgccaagaaggtg
ccgtttgtgatcgacctggccgtgctggcttcacgacgcgagttcctcaacctcgagaag
tggatcaacgaccagatccgagaacacggtgaggctttcatcaaggccagcattcaattc
cttcaccgcaaactccccagcctctcttcaagcaatcatcccgcggcgggtcccctcaaa
gaagaacaactggtcaaggccaacttctcgctggagtccttggtgaccattctggcttgc
ctgcaaaacgtcatgcgacaggtcacgcatttgcactcggatttgaaagacgccattgtg
tccatgcttcagatgagccaacccctcgtggccaatcccagacccaaccaacagctcccg
cctccacccgcagcacccgccagcattatgagaccgccccattctcacgtggatagcggc
gggggtgcaggtccggccggttccatcgggagtcccattcgtccaacacctcgacagggc
ggattccctatgaaccccaacgacccgctcatgaacatcaccagtcagttcaataacatg
catctcccaccgtcgtcggtggccagctccagctcttctttcagtttgggatcctcaagc
ctcggtccgctcgtctcagggggcggggctgtcggtccgggggggtcgcccagtcggatc
tttggcgggggtccctcctcaatgccgccgcccacttccatggagagcgcggctgcatcc
ggaaacgccaactctccgtcccctttcagcgggatgccacccatgcccatagcgtcggga
tcgtcctcggcccaattggcccctggagccagttctggaggaggaggacctccaggagga
cctccaggtggggttatggatcgccccgggggcattaacctgtttggagaaggggtcggt
gggggacccggtggtggtcccggtggtggacccggtggtggcggcaatcagatccctcgg
gaaatcgaggacgaagccaacagctacttccaacggatctacaaccaccaattgagcatc
gacgaggtactagatctgctcaaacggttccaagagtctgccaaccatcgcgagaaagag
gtgtttcaatgcatgatcaagaacctgttcgaggagtacaaattcttcccgcaatacccg
gaaaaggagctccacatcacagcccagctcttcggaggtatcatcgagcacggtctggtg
acacttgttccattgggcttggccttgagattcgttcttgacgccattcgtaagccaacg
tcaagcaacatgtactacttcggagtggcagccctggatcgcttcaaaatgagattaaaa
gactaccctcaatactgtcaacacatcactggtatcgaccatttcaaagattttcctccc
cacctgatcgagtgggtggaatgcggcgtacaaagtaatgtcccacctgacaaaccagct
ggtccggtgctgcccgcccacattgaagagacgatcaagctccaatctgccggcttggca
agtgccccgcccaccgccgcgcccaccgccgccaccaccaccacttcagcctccgcctca
tcaggcgccgtgggctcggggccgtcatcgtcatcttcggggccccagggcaacaaacag
cctctacccacgtcgaccgtggcacccatgacgtcgaccgtggcctcgtcgagcacgatt
gcccgacccacggtgacgaccgtgggcggacggccgtccatcgccaacaccaccaacatc
gataccttgctgaacgcgcgacagaaggccgtggctttggccataccttcggagaagatc
caggacaaagtggcgttcatcttcaacaacctgagtcttatgaatatgagtcagaaatcg
cgagagctcatggagcatttgggcgaagaatatttcggttggctggcccagtatctggtc
atgaaacgggccagcatcgaacccaatttccattcactctacgccaacttcttggagacg
ctccacaaggaggagttgtacaattgcgtgctccgggagacgttcgggaacatccagatc
ctcttgggcagtgacaaggccattgccaatttcagcgatcgttcactcctcaagaacttg
ggccattggcttggcttgatgacgctccatcggaatcgacccatcctaatggtcgaccta
gatctcaagccgcttatcattgaagcatatcacaatggacaacaagagctcctctacgtg
atcccctttgtggccaaggtcctcgagtcgtgcgccaagagccgcgtcttcaaaccaccc
tgcccctggaccatgggcatcatgaaccttttggccgaactcaatcaagagcacgacctc
aagctgaacctcaagttcgagatcgacgtcctgtgtcgaactctcacgctcaaattggcc
aacctgaaccccgggacccttctcaaggactacgacaaactcaatcggatgttgaacttc
aacaacttcggcatgagccagccgcccatcacttcctccggaccacccaagagctccatg
gagaactcgttcgtgcaagctcatcgcaaactagaccacccgcccatgcctcaaaacatg
ggcatggacatggccccaatgatgccgagtggtggacccttcgggcctccgtcgcattcc
atgctgtcacaacatcaacctggtgctgcgggtgcgggcctaggtcgggcattgatcgcc
gggcccacggccaatttgggcatgatgggctcgtcggcgtcggctatgaacgagagcgtc
acctccggagtgactgccagctcagccgggtccaccggagagacccttcttcccacgtcc
cagtctcaggccacggcccatctgtcctcgaacgtgactcaatccgctgcagccgccatg
gccgcctccatgcccgtgcccagtcagaacaagcctcttgagcccaagttccattttatg
gacatcgatacgagcagtttgaacgggatcgtgtcccaaatcaccgtggacccccgattg
accctactgaaagagcagcctgattttgcccagctggtcaagttatccattgaaaaatcg
attcaggaatgggcttcgcctgtgattgatcgggccatgaagatcgccctgaccacgagt
gaacaactcatcaagaaggactttgccttggatcatgacgaggcacgtatgcggagctct
gcacactccgtggtacgcaacctcatggctggtatggccatgattacctgccgtgatcac
ctgaacaactccatcaagacccacatgaaaagcttcatggcctctctgggcaccaattta
acgccgcaacagcaagagctcattgacgccacggccaatcaaatcgcggccgacaacgtc
gagttggcgtgtgccttcattcagaagaaggccatcgaaaaggccctgccggaaatcgac
aagcgtctcaagagcgagtacgatagccgaatcttggccaagaaagaaggtcggcggtac
tgtgatcccgtggctctggcctaccaaaacgagcagatgcccgaggcgattcgtatcaaa
ccgggtcaagtgatacccgcgcaaagggcggtttacgacgaatacgcccgacacattcca
ggattcaagcctttgagtgagcgcgaggccgcggccatcactccgagaacgcccagcgtg
gccgagactccagcgggcaatgtcgcctcatccgtggcggggcctcagccaggaccgcag
gcgggtgcggggggcggaccgccaaggcccatgggcgctaacacgcctgaacagactccg
gacgagtgtattggtatcctggatgaggtcttcaacaagatcaagggtttcgtcgagaat
tgcacgcacttgcccactaatccgcacatgaccaatctccgtggactattggagtgcatg
ggtcgtgctaggcaatccaaggacccacagaatgtggttactctcgtccagaaggctgtt
gagaacctcctggaaggcctgattgcccagaacgagccaactcaaatagaaaccgaagcc
ttggccagatatcgagacgccaatctcttgatcttccgcgccatcgcagacagccgcgcc
tttggtcaagcctggaccaatgccaaggtcacgcaattcctcatcgaggccaaggaagag
ctccgctacaatctggatgccgtgaactcgctgatccagttcagtttcatcaacctccag
gagtacgacaagtacctggcagctagcatggagaacggggccaacgtcctggccaccaag
ttcgccatgcgcatctgtcacgtttacttaatcgaagaccgctccaacgcacaaatcatc
gaaagcgacctattcggcaccattgaggtgctccagaagatatccagctcctcgcaaatg
ccccccgatggcctgtccaacctcatggagatgatcaagatgtccagcgagcgactggaa
cagaacctggccttgtcaggtcccaccggccaactgcacagcgggatcgtacaagccaaa
gagtttgaggatccacccggcctcctcgagaagaccgagttcttgctcagagaatgggtc
aacgcctaccacagtcgtgaagcgggcaaagactcccgacaagccttcatcgtgtttgtt
cagctgatgaaccagcacggcatcctgaaaaccgatgacctcatcacgcgattcttccgc
atgtcgacccaaatgtgcgttgacctgtgctatcgagccctaggagagcagcataactcg
ccgactttggtgcgggccaagtgtttccacactttggacgcttatgttcgtttgatcaca
ctcctcgtgaagcattccggagagacccagaacaccatcaccaaggtgaacctgctcaac
aaggtgttgggtatcgtggccggggtgctgctcatcgatcacgacgtccgaaatgtggag
ttccagcaggtcccctaccatcggatcttcatcatgctgttcctagagctgaactcgccc
gatcagatcctcgagaccatcaacttccaagtgctcacggcctactaccacatgctccac
atcctcagcccgagcaaagcaccgggattcgcctacgcctggttggagatcgtctcgcac
cgtgtgttcatgggccgcatgttggccagcatatcgcaacagaagggttggccgatgtac
tctcagctcttggtggatttgttcaagttcctgtcgccattcttgcgcaacgctgagctg
gccaagcccgtgcacagattgtaccggggtacactgcgagtcctgttggtgttgctgcac
gacttccccgagttcctctgcgactatcactacgggttctgtgacgtgatcccacccaat
tgcattcaaatgcggaatctcatcctgtcagcctttccacgaaacatgagattgcccgac
ccattcacgcccaatttgaaggtggaaatgttggccgatattgccatcgcgcctcgggcc
gtcaccaattatgcggccatgatcaagcccagcttccgcaaggagctcgatcattacctc
aagaaccgcacgcccgtcagcttcttgtccgatgtgcgggagaacctcctcgttggcaat
ggggacatccccgggaatcgttacaacatccagctgatcaacgccctggtcatgcacgtg
ggcacgtgcgccattcagcacatccgcgccaaggggcagaccccgaacatgtccactatt
gcacactcctcgcacatggacatcttccaaaacctggccgtcaacctggagaccgaggga
cgctatctgttcttgaattgtattgccaaccagctgcgctaccccaattcccacacccac
tacttctcctgcacccttctctacctgttctccgaggccaatacggaggccatccaagag
caaatcacgcgcgttctcctggagcgcctcatcgtgaaccggccccatccctggggtctc
ttgatcaccttcattgaactcatcaagaacccgagcttctcattttggcaacacgaattc
gtcacgtgcgctccggagatccaaaagctcttcgaatccgtcgcccgttcatgtatggtg
cccagaatggcggatgggacaaatgtgagcaacaacaatgccgccgattga
DBGET
integrated database retrieval system
