Thauera chlorobenzoica: Tchl_0067
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Entry
Tchl_0067 CDS
T04612
Name
(GenBank) excinuclease ABC subunit A, dimeric form
KO
K03701
excinuclease ABC subunit A
Organism
tcl
Thauera chlorobenzoica
Pathway
tcl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tchl_0067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcl03400
]
Tchl_0067
DNA repair and recombination proteins [BR:
tcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tchl_0067
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tchl_0067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
AAA_29
AAA_21
nSTAND1
SMC_N
RsgA_GTPase
UvrA_DNA-bind
AAA_16
AAA_22
Viral_helicase1
AAA_23
AAA_33
NACHT
AAA_25
nSTAND3
DnaJ_CXXCXGXG
Anti-TRAP
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
APR02943
UniProt:
A0A1H5V710
LinkDB
All DBs
Position
65222..71158
Genome browser
AA seq
1978 aa
AA seq
DB search
MAASAFASLPMPASAPRYIPVGSSVSVAPASVADAIRIRGARQNNLRNLSLDLALNRLTV
VTGVSGSGKSSLVFDTLYAEGQRRYVETFSPYARQFLDRMDKPQVDRIEGVPPAIAIDQT
NPVRTSRSTVGTMTELADHFKLLYARAAQLHCCGCGKPVRRDSADSIAADLRVRAAATGD
PRLVVCFPLAVPANFSADEVAGLLAAQGYTRIQERCAGAGAEGQDVLQVVQDRFRASNAE
DARLAEALEAALQRGHGRLSVYVSGEGVNSETRNGTGTPGEAVWRYSSGLHCADCDLHYS
EPTPGLFSFNSPIGACDTCRGFGRVIGVDHGLVVPDESKTLAEGAVKPWQTESYRECQDD
LAKMAKKAGVAMDIPVRDLPPEHRAWLFEGDPKWKSWDSSWPRYWYGVRHFFDWLESKAY
KMHIRVLLSRYRSYTECPACHGARLKPDALLWRLPIAGQGFGRSGFSREPAEAIDHGGKG
RVIAAEAAPTGRSTGIAIHELMALPVDRIRAAIEALALPGAADEATALVLGEIRSRLAYL
ADVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDIGRILGV
MTRLRDAGNTLVVVEHDPQVMVAADELLEIGPGPGERGGNIVARGTPAEIAANPDSVTGP
WLAGRKRIDVDRPPRPVDADTPRLKLVGARQHNLRDLSVGFPLRRLTCLTGVSGSGKSTL
IQDVLHPALARHFGEAAGGAEAGAFDRLAGVDKLRGVVMVDQSPIGKSSRSNPVSYVGAW
DPIRALFAALPEAQQRGYTPGTFSFNAGHGRCPTCTGSGFEHVEMQFLSDVWLRCPDCDG
KRYRPEVLELQWNGLSVADVLALTVHEALDVFGAHPKVLAALAPLADVGLDYLRLGQPVP
TLSGGEAQRLKLAGHLAEAAQRKPVRKASAVDKSGGKAGGKPEPGLLFLFDEPTTGLHFE
DVATLLGAFDKLLQAGHSLIVIEHNLDVIAAADWIIDLGPEGGEEGGAIVVEGPPETVRA
HAASHTGAALRDYAEALRKIGARPTGRATGARGDPPGRPYGHAFVTGPENSGLSPISLGT
ETGVAEPRAQYRPIAAPAIEIRHAREHNLKNVSLQIPRDRFTVITGLSGSGKSTLAFDIV
FGEGQRRYLESLNAYARQFVQPASRPDVDGLFGIPPTVAIEQRTSRGGRKSTVATLTEIH
PFLRLMYVKLGTQFCPDCDVAVTPQSFEAIVAQLQRELRGASVEVLAPLVVNRKGLYTDL
AKWARAKGHAQLRVDGDYLPTARWPRLDRYKEHNIELPAGRVVVQPEHEATLRELVHQAL
EIGKGVIKVLETGKPGAAPITFSTLRACPSCGTGFPEPDPRLFSYNAKHGWCPKCYGTGL
KTAARIDDPDALDLGDAEEVIVSDEPCPACAGARLNPVARAVRFRELGLHQLAAWPVDKA
AGFFADLALNARETDIARDLVSEIRGRLAFLQHVGLGYLALDRAAPTLSGGEAQRIRLAA
QLGSNLRGVCYILDEPTIGLHPRDNRLLLDTLEALRDRGNTLLVVEHDEDTIRRADHVID
LGPGAGVRGGRVVAEGTIDDLLNAPESATGECFRHPLQHPLRPRRAVADEHAAIRIEGAN
LHNLRDLSVRIPLARLTVVTGVSGSGKSSLARDVIHTNLRARLGDPEATRARRRGQAQPN
EVDQALVGCKAIRGWQQLGRVLEVDQTPIGKTPRSCPATYVGFWDAVRKLFADTFDARTR
GWNASRFSFNTGAGRCPVCDGAGQTTVEMSFLPDVKTPCEGCGGARFNAETLSVRWKDRT
VAEVLAMAVDEAVGFFSAHPAIAHPLQLLQDVGLGYLSLGQPSPTLSGGEAQRIKLVTEL
AKVRRRPGDAEDTGGVPLPADKHSLYVLDEPTVGLHMADVDKLIRVLHRLTDAGHSVLVI
EHDLDVIAEADWLIDLGPEGGDGGGRVVAEGPPEVAMATPASHTGRHLREFLVQRRPG
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttccgccttcgcctcgctccccatgcccgcctccgcaccccgctacattccg
gttggttcttccgtttcggtggcccccgcctcggtcgccgacgccatccgcatccgcggc
gcgcgccagaacaacctgcgcaacctctcgctcgacctggcgctgaaccgcctcaccgtg
gtcaccggggtgtcgggctcgggcaagtcctcgctggtgttcgacaccttgtacgccgag
ggccagcggcgctacgtcgagactttctcgccctacgcgcgccagttcctcgaccgcatg
gacaagccgcaggtggatcggatcgagggcgtgccgccggcgatcgcgatcgaccagacc
aacccggtgcgcacctcgcgctcgacggtggggacgatgaccgagctcgccgaccacttc
aagctgctctacgcgcgcgccgcgcagctgcactgctgcggttgtggcaagccggtgcgg
cgcgattcggccgacagcatcgccgccgacctgcgcgtgcgcgcggcggcgacgggcgat
ccgcgcctggtggtgtgctttccgctggcggtgccggcgaacttcagcgcggacgaggtc
gccgggctgctcgccgcgcagggctatacccggatccaggaacggtgcgccggggccggc
gccgaagggcaggacgtgctgcaggtggtgcaggaccgcttccgcgcatcgaacgccgag
gatgcgcgcctggccgaagcgctggaggcggcgctgcagcgcggccatggtcggctgtcg
gtgtatgtgtcaggcgaaggcgtgaactcggagacaaggaatgggacggggacgccgggc
gaggcggtgtggcgctattcgtccggcctgcactgcgcagactgcgaccttcattattcg
gagcccacgcccggcctgttctcgttcaactcaccgatcggcgcctgcgacacctgccgc
ggcttcggccgcgtgatcggcgtcgatcacggcctggtcgtacccgacgagtcaaaaacg
ctggccgaaggcgcggtgaagccgtggcagaccgagagctaccgcgaatgccaggacgac
ctggcgaagatggcgaagaaggccggggtggcgatggacatcccggtgcgtgacctgccg
ccggagcatcgcgcctggctgttcgagggcgacccgaagtggaagagctgggacagctcg
tggccgcgctactggtacggcgtgcgccacttcttcgactggctcgagagcaaggcctac
aagatgcacatccgcgtgctgctgtcgcgctaccgcagctacacggagtgccccgcctgc
cacggcgcgcggctgaagccggatgcgctgctgtggcggctgccgattgcggggcagggt
ttcggcaggagcggctttagccgtgaacctgcggaggctatcgaccatggcgggaagggt
cgggtgatcgcggctgaagccgctcctacggggcggtcgaccggtattgcgatccacgaa
ctgatggcgctgccggtcgatcgcatccgcgcggcgatcgaggccctggcgctgcccggt
gcggcggacgaggccaccgcgttggtgctgggcgagatccgcagccggctcgcctacctt
gccgacgtcggcctcggctacctgaccctggaccgccagtcgcgcacgctgtcgggcggc
gaagtgcagcgcatcaacctgaccaccgcgctcggcacttcgctggtgaataccctgttc
gtgctcgacgaaccttcgatcgggctccatccgcgtgacatcggccgcatcctcggggtg
atgacgcggttgcgcgacgccggcaacaccctggtggtggtcgagcacgacccgcaggtg
atggtggccgccgatgagttgctcgagatcggtcccggccccggcgagcgcggcggcaac
atcgtcgcccgcggcacgccggcggagatcgccgccaaccccgattcggtgaccggcccc
tggctggcgggcaggaagcgcatcgacgtcgatcgcccgccgcgcccggtggacgccgac
acgccgcgcctgaagctggtcggtgcgcgccagcacaacctgcgcgacctcagcgtgggc
ttcccgctgcggcgcctgacctgtctcaccggggtgtccggctcgggcaaatcgacgctg
atccaggacgtgctccatccggcgctcgcacgccacttcggtgaggccgccggcggtgcc
gaggcgggagccttcgaccgcctcgcgggtgtggataagttacgcggtgtggtgatggtg
gaccagtcgccgatcggcaagagctcgcgctccaacccggtcagctacgttggcgcctgg
gacccgatccgcgccctgttcgccgccctgccggaggcgcagcagcgcggctataccccc
ggcaccttcagcttcaacgccggccacggccgctgtcccacctgcaccggctccggtttc
gagcacgtcgagatgcagttcctgtccgacgtctggctgcgctgcccggactgtgacggc
aagcgctatcggcccgaagtgcttgaattgcaatggaacgggctgtcggtggcggatgtg
ctggcgctgaccgtgcacgaggcgctggacgtgttcggcgcgcatcccaaggtcctcgcc
gcactcgcgccgctggccgacgtcggcctcgactacctgcgcctcggccagccggtgccg
acgctgtcgggcggcgaagcgcaacgcctcaagctcgccggccacctcgccgaagccgca
cagcgcaagcctgtacgcaaagccagtgctgtggataagtctgggggcaaagctgggggc
aagccggagccgggcctgctgttcctgttcgacgaacccaccaccggcctgcatttcgag
gatgtcgccaccctcctcggcgccttcgacaagctgctgcaggccggccactcgctgatc
gtcatcgagcacaacctcgacgtgatcgccgctgccgactggatcatcgacctcggcccc
gagggcggcgaagagggcggtgcgatcgtcgtcgaaggcccgcccgagacggtgcgcgcc
catgccgcttcgcataccggcgccgcgctgcgcgattacgccgaggcgctgaggaaaatc
ggggccaggccgacagggcgcgcgacgggggctaggggcgacccgccgggtcgcccctac
ggccatgcattcgtcacggggccggaaaattccggtctgtcccctatttccctcgggacg
gaaaccggggtcgcggaaccgcgggcgcaatatcgcccgatcgccgctccggcgattgaa
atccgccacgcccgcgagcacaacctgaagaacgtcagcctgcagatcccgcgcgaccgc
ttcaccgtgatcaccggcctgtccggttcgggtaagtccacgctggccttcgacatcgtc
ttcggcgagggccagcgccgctacctggaatcgctcaacgcctacgcccgccagttcgtc
cagcccgccagccggcccgacgtcgatggcctgttcggcattccgcccacggtggcgatc
gagcagcgcaccagccgcggcggcaggaagagcacggtggcgacgctgaccgagatccac
cccttcctgcgtctgatgtacgtcaagctgggcacccagttctgccccgactgcgacgtg
gcggtgacgccgcagagcttcgaggccatcgtcgcccagcttcagcgtgagctgcgcggc
gcttcggtcgaggtgctggcgccgctggtggtcaaccgcaagggcctgtacaccgacctc
gccaagtgggcgcgggccaagggccatgcgcaactgcgcgtcgatggcgactacctgccc
accgccaggtggccgcgcctggaccgctacaaggagcacaacatcgagctgcccgccggc
agggtggtggtgcagcccgagcacgaggccacgctgcgcgagctcgtgcaccaggcgctg
gagatcggcaagggcgtgatcaaggtgctcgagaccggcaagcccggcgcggcgccgatc
accttctccaccctgcgcgcctgcccgagctgcggcaccggctttcccgagcccgatccg
cgcctgttctcgtacaacgccaagcacggctggtgccccaagtgctacggcaccgggctg
aagaccgcggcgcgcatcgacgacccggatgcgctcgacctcggcgatgcggaagaagtc
atcgtcagcgacgagccctgccccgcctgcgccggcgcgcgcctcaacccggtggcgcgc
gcggtgcgcttccgcgaactcggcctgcaccagctcgccgcctggccggtggacaaggcg
gcgggcttcttcgccgatctggcgctcaacgcgcgcgaaaccgacatcgcccgcgacctg
gtgagcgaaatccgcgggcggctggccttcctccagcacgttggcctcggctacctcgcc
ctcgaccgtgccgcgcccacgctgtcgggcggtgaggcgcagcgcatccgcctcgccgcc
cagctcggctccaacctgcgcggggtgtgctacatcctcgacgagcccaccatcggcctc
catccgcgcgacaaccgcctgctgctcgacaccctcgaagccctgcgcgaccgcggcaac
acgctgctggtggtggagcacgacgaggacaccatccgccgcgccgaccacgtcatcgac
ctcggccccggcgccggcgtgcgcggcggccgcgtggtcgctgagggcaccatcgacgat
ctgttgaacgcgcccgaatcggccaccggcgaatgcttccgccacccgctgcagcatccg
ctgcgtccgcgccgcgcggtggcagacgagcatgcggcgatccgcatcgagggcgccaac
ctgcacaacctgcgcgacctttcggtgcgcatcccgctcgcgcgcctcaccgtggtcacc
ggcgtctccggctcgggcaagtccagcctcgcgcgcgacgtgatccacaccaacctgcgg
gcgcggctgggcgaccccgaggccacccgtgcccgccgccgcggccaggcccaacccaac
gaggtcgaccaggcgctggtcggctgcaaggcgattcgcggctggcagcagctcggccgc
gtgctcgaagtcgaccagaccccgatcggcaagaccccgcgctcctgcccggcgacctac
gtcggcttctgggatgcggttcgcaagctcttcgccgacactttcgatgcccgcacccgc
ggctggaacgcctcgcgcttctccttcaataccggcgccgggcgctgcccggtgtgcgac
ggcgccggccagaccacggtggagatgagcttcctgcccgacgtcaagacgccgtgcgag
ggctgcggcggcgcgcgcttcaacgcagagaccctgtcggtgcggtggaaggacaggacc
gtggccgaggtgctggcgatggcggtggacgaggcggtgggcttcttctccgcccatccg
gcaatcgcccacccgctgcagctgctgcaggacgtcggcctcggctacctgagcctgggc
cagcccagcccgacgctgtcgggcggcgaggcgcagcgcatcaagctggtgaccgaactg
gccaaggtgcgccgccgcccgggcgatgccgaggacaccggcggcgtgccgctgcccgcc
gacaagcacagcctgtacgtgctcgacgagcccaccgtgggcctgcacatggccgacgtg
gacaagctgatccgtgtgctccaccgcctgacggatgccggccacagcgtgctggtgatc
gagcacgacctcgacgtcatcgccgaggccgactggttgatcgacctcggcccggaaggc
ggcgacggcggcggccgggtggtggccgaaggcccgcccgaggtggcgatggcgacgccg
gcctcacacaccgggcgccatctgcgtgagttcctggtgcagcgcaggcccggatga
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