Hydrogenovibrio crunogenus: Tcr_0288
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Entry
Tcr_0288 CDS
T00296
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tcx
Hydrogenovibrio crunogenus
Pathway
tcx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tcr_0288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcx03021
]
Tcr_0288
03400 DNA repair and recombination proteins [BR:
tcx03400
]
Tcr_0288
Enzymes [BR:
tcx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tcr_0288
Transcription machinery [BR:
tcx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tcr_0288
DNA repair and recombination proteins [BR:
tcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tcr_0288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABB40884
UniProt:
Q31IY9
LinkDB
All DBs
Position
333651..337709
Genome browser
AA seq
1352 aa
AA seq
DB search
MTYSLTEKKRIRKDFATRSSILEVPYLLSLQKESFKEFLQKDKKPLERDPIGLHSAFSSV
FPIHGVAGTADLEYVSYTMGQPEFDVKECKQRGVTYSSPLRVKMRLVLFDKDAPAGKRPV
KDVKEQEVYLGDVPLMTENGTFVINGTERVIVTQLHRSPGVIFDSDKGKSHSSGKVLFNA
RIIPYRGSWLDFEFDHNDCVFVRIDRRRKLPVSIIFRAMGYSSEEILDTFFDHTHISYKK
GAFVMQLVPSQLKGQTAAFDIADGDKVIIKAGKKITARNIKQLQEAKVDSVVVPEEYLLG
KVLSSGITNEETGELVARSNEVIASDLIETMKSIKDLSFRILFIDDLENGSYISDTLNLD
TTTSQLEAQIEIYRMMRPGEPPTKESSEALFNSLFFDEARYDLSSVGRMKLNRRLGRKDN
EGSLVLENQDVVDVVKELLNIRNGLSTIDDIDTLGNRRIRAVGEMAENAFRVGLVRVERA
VKERLNQAETDGLLPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLAIYAKTNKYGFLETPYRKV
IDGQVTEEVEYVSAIDEAQFVIAQASAAMDSDNKLLDELVTARHKNETILASSQDIDYMD
VSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIEKTVAIDSGV
TVIALRGGEIVSSDSARIVVRANQEEIAEGETGVDIYNLIKYQRSNQNTCINQKPIVKAG
DVVSRGDVLADGPSTDLGELAIGQNMRIAFMPWNGYNFEDSILVSERVVQEDRYTTIHIE
ELTCLARDTKLGPEEVTSDIPNVGEAALSRLDESGIVYVGAEVKQGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVSKGVEGTVIDVQVFTREGVKKDARALAIQEDELQ
KVRKDIDEQYKILEEDTIDRIQPMLIGQKLVDGTEITADFLASQDSSKWFGLNVADDALS
SHLESLEKQLVAKKEELNGVFEEKKKKLTQGDDLQPGVSKMVKVYVAVKRRIQPGDKMAG
RHGNKGVISRICPVEDMPYDETGRPVDICLNPLGVPSRMNVGQILETHLGLAAEGLGAKI
NAMLEQQADIKELKSFLHKIYNETQGQKVDFDSLTDAEIIELAGNLRKGVPMASPVFDGA
SEDEIKALLRLADLPESGQMKLYDGISGEEFDRPVTVGYMYYLKLNHLVDDKMHARSTGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSDDLNGRTRMYKNIVD
GNEYMEPGIPESFSVLRKEIRALGIDIELEQE
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgacctattctttaactgaaaagaaacgtattcgtaaagattttgcgacacgatcttca
attcttgaagttccttatcttctttctctccagaaagaatctttcaaagagtttttacaa
aaagataaaaaaccacttgagcgtgatccgataggattgcattcagcattttcatccgtt
tttccaattcatggtgttgctggaacagcagatcttgagtacgtcagctatacgatgggt
cagccagagtttgacgttaaggaatgtaagcaacgtggtgtaacgtattcatctccttta
cgtgtcaagatgcgtctggttttgtttgataaggatgcgccggctggaaagcgtccggtt
aaggatgttaaagaacaagaggtgtatctaggcgatgtccctttgatgacagagaatggt
acttttgttatcaacggaactgagcgtgttattgtgacacagcttcatcgttctccaggt
gtgatttttgacagtgataaagggaagtcgcattcgtctggtaaagtgttgttcaatgcc
cgaattattccttatcgtgggtcttggttggattttgaatttgatcataatgactgtgtg
tttgttcgtattgaccgtcgtcgtaaactcccagtctcgattattttcagagccatgggg
tatagttctgaagagattctagatacgtttttcgatcatacgcatatttcatataaaaaa
ggtgcatttgttatgcaattggttccaagccaattgaaaggacaaacggctgcgtttgat
attgctgacggcgataaagtgattattaaggccggcaagaaaattacagctcgtaatatc
aaacaattgcaagaagccaaagttgatagcgttgttgttccagaagagtatcttttaggg
aaagtgttgtcttcagggattacgaatgaagaaactggtgagttagttgctcgttcgaac
gaagtgattgccagtgacttgattgaaacaatgaagtcaattaaggatttgtctttccgt
attctgtttattgacgatttagaaaatggatcttatatctcagatacgttgaacttagat
acaacaacctcacagcttgaagctcaaattgaaatttatcgtatgatgcgccctggtgag
ccaccaacgaaagaatcatcagaggcattgtttaacagtttgttctttgatgaagcgcgt
tatgacttgtcttctgttggtcgaatgaagttgaacagacgcttaggacgcaaagacaat
gaaggcagcttggtgcttgaaaaccaggatgttgtagacgtggttaaagagttactgaat
atccgtaatggtttaagcacgattgatgatattgatacactaggtaacagacgtattcgt
gctgttggtgaaatggctgaaaatgctttccgagtaggtttagttcgcgtagaaagagcc
gttaaagaacgtctaaatcaagcggaaacagatggactgttgccacaggatttgattaat
gcgaagcctgtttcagcggctattaaagaattttttggttcaagtcagctgtcacagttt
atggatcaggtgaatcctttatcggaagtcacacataagcgacgtgtgtcagccttgggg
ccaggcggtttgacgcgtgagcgtgcaggttttgaagtacgtgatgtgcatccaacgcat
tatggtcgtgtgtgcccaattgaaacgcctgaaggtccaaacattgggttgattaataca
ttagccatttatgctaaaactaataaatatggtttcttagagacaccgtatcgaaaagtt
attgatggtcaggtgactgaagaagttgaatatgtttcggccattgatgaagcacagttt
gtgattgcacaagcaagtgctgcaatggattcagataataagttgcttgatgagcttgtg
acagcaagacataaaaatgaaactattttggcatcttctcaagatatcgactatatggat
gtctcaccaaaacagatcgtttctgtcgccgcttctttgatcccattccttgagcatgat
gatgctaaccgtgccttgatgggctcaaacatgcagcgtcaagccgttccaacattgcga
gcggataaaccgttagtcgggacgggaattgaaaaaacagttgcgattgactcaggtgta
accgttattgctttacgtggtggagaaattgtttcttccgattctgctcgtatagtggtc
cgtgcaaaccaagaagaaattgctgaaggtgaaactggggttgatatttataacttgatt
aaatatcagcgttcaaaccagaacacgtgtatcaaccagaagccgattgtaaaagcaggc
gatgtcgtatcacgtggtgatgtattggcagatggcccttcaacagatttaggtgagttg
gccattggtcaaaatatgcgtatcgcgtttatgccatggaatggttacaactttgaggat
tcgatcttagtttctgaaagagtggtacaagaagatcgttacacaacaattcatattgaa
gaattgacttgtcttgctcgtgatacaaaattagggcctgaagaagtaacgtcagatatt
ccaaacgttggtgaagcggcactatcaagattagatgaatctgggattgtttacgtcggt
gcggaagtcaaacaaggcgatatcttagttggaaaagtcacgccaaaaggtgagactcag
ttaactccggaagagaaacttctgcgtgcgatttttggtgaaaaagcatcggatgtaaag
gatacatcattacgcgtcagtaaaggggtggaaggaaccgttattgatgttcaggtcttt
acgcgcgaaggtgttaagaaagatgcacgtgccttggcaattcaagaagatgaattgcaa
aaagttagaaaagacattgatgagcaatataagattcttgaagaagacacaattgatcgt
atccagccaatgctgattggtcaaaaattagtggatggaactgaaattacagcagacttc
ctagcttctcaagactctagtaaatggttcgggttgaatgttgctgacgatgcactgtct
tcacatttagagagcctggaaaagcaacttgtagctaagaaagaagagctaaatggtgtc
tttgaagagaagaagaagaagttaactcagggtgatgatctgcagccaggtgtttcgaag
atggttaaggtttatgtggcggttaaacgtcgtattcaaccgggtgataagatggctggg
cgccatggtaacaaaggtgttatttcacgcatttgtccagttgaagatatgccatatgac
gagacgggtcgacctgtagatatctgtttgaatccattaggggttccatctcgtatgaat
gttggacagattctagaaacgcatcttgggcttgcagctgaaggacttggtgcaaaaatt
aatgccatgcttgaacagcaagccgatattaaagagcttaaatctttcttgcataaaatt
tataacgaaactcaaggtcaaaaagtagactttgattcattgactgatgcagaaattatt
gagttggcgggtaaccttcgtaaaggggttccaatggcttcacctgtatttgatggtgca
tctgaagatgagattaaagcgttattaagacttgcagaccttcctgagtcgggtcaaatg
aaactttatgatggtatcagcggggaagagtttgatcgtccagtaaccgttggttatatg
tattacttgaagcttaatcacttggttgatgacaagatgcatgcgcgttcaacgggccct
tacagcttggttacgcaacagccgttaggtggtaaggcgcaatttggtggtcagcgattt
ggtgagatggaagtgtgggctctggaagcttatggggcagcatttacactacaagaaatg
ctgacagttaagtcagatgatttaaatggtcgtacacgcatgtataaaaatattgtcgat
ggcaatgaatacatggagccgggtattccagaatcattcagtgtattacgtaaagaaatt
cgtgccttgggtattgatattgagttggagcaagaataa
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