Trachymyrmex cornetzi: 108765295
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Entry
108765295 CDS
T11212
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108765295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108765295
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108765295
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108765295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108765295
NCBI-ProteinID:
XP_018369445
LinkDB
All DBs
Position
Unknown
AA seq
2403 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDICQEISDLVQCGGLEADRHLFRCLISCVDFSKG
ELSDSSAKDYFQTKLLKQECNSLLSKPSFISTLCFAIDNPLHHQKSLNFSPKFFTNLKKT
LGLTLVQEVTFAIALQHSENAEIRALALEHTQKQLPELIKNYINSETSNKHQEGGLHDSL
PQVLHLILSQAFHTANPYNLPVETKEKFLKHLRRDFPRELVPVVLAPFLYPADEETLQFK
IELNMAVTQMDSNTLVELIMELGYSFTSNIEECRSALTGLGAREISPACVARVLSQMARS
CSNLDDAGGLQTFWGNSTTSQDSSKEKSSDSTIPTTWNVEVFVLTLKEIQSTLSWNEVIV
KLDHAEFLIKDRQGLNLLITGLKLGLQHQGYPPDMFPVELLYRHWENIEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNIVELLLHMAERGLYNPVQEIFK
WPLQHCPDVLILALLQINPPFTLLRQEMFTTLLPIFLGNHPNSAVILHHAWHANNPKIKT
LIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSK
QVDPLGNLGSSLASMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGGTIGGLGRLGPPAGIEKARMPETSNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRL
KEYQTYCEHVRTISHFTEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKTM
TTTTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDK
TAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKL
PEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLK
SLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLN
LKFEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLDYQLSHPNKKSETTSNQQQSQGPMEE
LVGSTTSGTINPQTAPPADTTPSLPAGQPEPRFNYMDISVTGIANISQHITINNQIPLFQ
THPHLKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEELRMRTAARHM
ARNLTAGMAMITCRDQILASISTNLKQAFLTALIGTTPQQKELVELAANQVATENMELAC
AFVQKTAIEKAVPEMDKRLLNEVELRKLARQEGRRYCDPIAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQTLFIPKPISEAPLTAFTPNSAIAVATAQVAAYAT
VAVSNDEVGAMLEKLATEVEVLAAAMAPAVPPQQHAILHSLLESIILTRRSRDANAAMAL
LKKAVEGLLDGPIFNSGVIDSDNLIQRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLIE
CREDYRYNFEAVDYLIRSHLISLPQYDIAVAQAVEAGNALATVFAMQLVQLYLIDERQAT
HVTETDLFHTLEILARMSHHRTPPEGISLYRLTSLVESLRANHDTNAVLVDRAPAGPTAH
IHSGILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGDA
TNTHTKINLLNKVLGIVAGVLLQDHEIRGADFQQLPYHRIFIMLFLELCAPEPVLEAVNF
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPGQKCWGMYAQLLIDLFK
YLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEIAQPPRVLTNFASTIQPLTFKKELDSYLKARAPVTF
LSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAILFIRSKGHAPNMSTIAHSAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPTTETE
IPE
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaaaaaaaatttcgaggacatctgtcaagagatatcggatttggtgcagtgtggtggt
ctagaggcagatcgacatttgttccgctgtctgatatcgtgcgttgacttttccaagggt
gagctgtcagattcgagtgcgaaagattatttccaaacaaagttgctaaaacaggagtgc
aatagcttgttgagcaaaccttcatttatatctactttgtgctttgctatagataatcct
ttacatcatcaaaagtcattgaatttctctccaaagttttttactaatttgaagaaaaca
cttggcttgactttggtacaagaggtcacgtttgcgattgcgttgcagcattcagaaaac
gctgaaattcgtgctttagccttggagcatactcaaaagcagctgcctgaattgataaag
aattacataaactctgagactagtaacaaacatcaggaaggtggtttgcacgactctttg
cctcaggtccttcatctgatactcagccaagctttccatactgccaatccatacaattta
cctgtggaaacgaaagaaaaatttcttaaacatttgcgacgtgactttcctcgtgaacta
gtaccagtggtactagcaccattcttgtatccagcagacgaggaaactctgcaattcaaa
attgaattaaacatggctgtcactcaaatggatagcaacactcttgtagagttgattatg
gaattaggatacagctttactagtaatatagaagaatgtcgatcggcattaacgggttta
ggtgccagagagatatccccagcatgtgttgctcgtgtattgtcacaaatggcacgtagt
tgtagcaacttggatgatgctggaggcctacaaacattttggggcaattcaactacctcg
caagactccagtaaggagaaatcatcggacagtaccattcccacaacatggaacgttgaa
gtatttgttctaacattgaaagagatacaatcgacattgtcttggaacgaagtaatcgtg
aaattggatcatgcagaattccttattaaggacaggcaaggtttaaacttgttgatcacg
ggtctcaagttaggcttacaacatcagggatatccacccgacatgtttcctgttgagctt
ttgtatcggcactgggaaaatatagaaggccaattttctttaattcagcaaatcctcaag
tgcccagacatattttgttttgctgattatccgtatcattcggtaacagtcgatgtatta
aaagcagctcctgaaggcgatagtaaggaaggacaaacttggcgatcattgaacatagtc
gagttacttttacatatggctgaaagaggcttgtacaatcctgtacaagaaatcttcaaa
tggccactccaacattgtccggatgtgctcatcttagcattactacagataaatccacct
tttacattactgaggcaggaaatgtttaccacgctgttgccaatctttcttggcaatcat
ccaaattctgctgtgatactgcatcatgcgtggcatgctaataatcccaaaataaaaaca
cttataatgcatgctatggcagattggtatacgcgtggtgatcacgatcaaactagatta
tcgcgcatcttggatgttgcacaggatttaaaagcactatctgctttacttaattcacaa
tcttttccatttgtcattgatcttgcttgtttggcatctcgacgagagtatctgaaactt
gaaaaatggttaacagacaagattagggaccatggagaagtttttgttgctgcatgtgtc
aaatttctacaacgacgatgtcctcaagtcatgggccctggtatcaaagaagatcctaca
gtccccaaggcaagccaactgccacaggaaacactcactacaattttggcttgcttgcaa
gtttgcgccggaagtgtctcccaggaactttcggaattaataatgacgatggtgcaaaat
tgtagtctaatgctgagtaagagcaccatgaacagaccaccaccaccgggagttttgaga
catcgaggattagaaccatttaatccggcaactttgggaagccaactattttcctcaaag
caagtggatcctcttggaaatcttggttcaagtcttgcttccatgggtctaggtacgggc
cttggaccgccaagtagctccgcattcaatttgcctggcgcgctaggtcctctggtttcg
gcgcccggatctccctcacgactcatgggaccttctcccagtccatttcctatgttgccg
ttatcttcgcaattacactcaggtccggttggtactcagggaccatctgtgcttcccggt
ggtacaataggtggattgggacgtctcggaccgccagctggtattgagaaagcgagaatg
ccggaaacctccaatttgtttcccgatatgggacaaaatgtatccaaagaggtcgaagac
gaagctaatagttattttcaacgtatttacaatcatcctccacatccaactctatcgatc
gacgaagtgcttgatatgttgaaaaaattccaagactctggtattagacgggagagagaa
gtgtttaactgtatgctacgaaatttattcgaagaatacagatttttcccacagtatccg
gaaaaggaattgcaaataacagcgcaattgttcggtgggattatcgaaaggggtcttgtc
aacagttatatgacacttggattagctctacgattcgttcttgatgcacttaaaaaaccc
gaaggtagcaaaatgtattattttggcataacagctttggatcgatttaagagtcgtttg
aaggaatatcaaacatactgcgaacacgtccgaacgatttcgcatttcaccgaatttccg
ccacacttagtggaatatatcgaatatgggttacaaggacaagaaccaccatcgagacca
caaggtccaaaaactttagcggcaatgttggctccagtaacaaccccgtacaaaactatg
actacaactaccatcacaactagcactacacaagcgaaaccatctacgactccgactacg
tctctttcggctagaccctctatgccctcggtcgctaatgcaactaatattgatacatta
cttgtggcaacagataaggaggaaaaaattacaacaccaccggaagctttacaagataaa
actgctttcatcttcaataatctcagtcaattgaacctacaacagaaatgtgacgagatc
cgtgagattgtcacggaagaatactggccgtggatggcacagtatttggtgatgaaacgt
gccagtatagaattaaactttcatgctctatactccaattttttggattgcataaaatta
cctgaagtgaataaaatggtaacaagagaaacattccgaaatatcaaggttctcttacga
agcgataagggaatagcaaatttctctgaccgatctctattgaaaaatttaggacactgg
ctcggaatgttgacacttggcagaaacaagcctattttacagatagacatagatttaaaa
agcttactcgttgaagcatatcataaagggcagcaagagcttctttatgtagtgcccttt
gttgcaaaagtacttgagagttgtgcaaaaagtcgtgtatttcgaccacccaatccatgg
accatggcaattatgaatgttttagccgaactacatcaagagcctgatttaaaattgaac
ttaaaatttgaaatagaggtactttgcaagaatctcagcattgatgttggggaattaaaa
ccggttatttacttgaaagatcccgaaaaattacgcaatctagattatcagttgtcacat
ccaaacaagaaatcagagacgactagtaatcaacagcaatctcaggggcctatggaagag
ttggttggatcgacaacaagtggtactatcaatcctcaaactgcaccacctgcggataca
acaccctcattgccagctggtcaacccgagccacgatttaattacatggatatatctgta
acgggcattgctaatatatctcaacacattaccatcaacaatcaaatacctctattccaa
acacatcctcatttgaaacaatttattcgccctgctgttgaaagagcaattcaggaatgg
atccatcccgtcgtggataggtccattaaaattgctcttacaaccagcgagcaaattgtg
agaaaagattttgcattggatccagaagaattgcgaatgcgtacagcagcacgtcacatg
gcgcgcaatctaaccgctggcatggctatgatcacatgtcgtgatcagatcctggcatcg
attagtacgaatctgaaacaagcgtttctcacagcgttgattggtacgactccgcagcag
aaagaacttgtcgaacttgcggcaaatcaagtcgctactgaaaacatggaacttgcatgt
gcattcgtacaaaagacagctattgagaaagcagtacccgaaatggacaaacgactatta
aacgaagttgagttgcgaaaactcgctcggcaagaagggagaagatactgtgatcctatt
gctaagtatcaagccgagaggatgccagagcagataaggctgaaagtcggtggtgtaacg
cctcagcaaatggctgtatatgaagaatttgctagaaatattccaggatttcttccactt
tccgaacgagatacgcaaacactttttataccgaaacctatttctgaggctcctctcact
gcattcacgcccaactctgcgatagcagtcgctacggcacaagtagcagcctatgcaact
gtagcagttagcaacgacgaagtaggtgcaatgctggaaaaacttgcgacggaagttgaa
gtcttagctgctgcgatggcacctgcggtacctccacagcagcatgctattcttcacagt
cttctagaatcaatcatacttacgagaagatcaagagatgccaatgcagctatggcgtta
ttaaagaaagctgttgaaggtttattagacggacccatctttaatagtggtgtcatcgac
tctgataatctaatacaacgttatagagaactacacttacggatcttgaagtgtcttcaa
gatccacgcgcgtacggtatgcaatggaccaacaagcacgtgactcgttgtctaatcgaa
tgccgggaagactaccgatataactttgaagctgtagactacctcataagatctcacttg
attagtcttccgcaatacgacatagctgtagcgcaagctgtagaggcgggaaatgctttg
gcaacagtattcgctatgcagttggttcaactttatttgattgatgagaggcaggcaact
catgttaccgaaactgacttatttcatacgcttgagatattggctcgaatgtcacatcat
cgaacaccaccggaaggaatctcactctatagattgacaagtctagtagagtcactacgt
gccaatcacgatacgaatgccgtattggtagacagagctccagcaggacctacggcacac
attcattctggaatcctgcaggtgagagctcgggattttgacgatccacccggactgatg
gataagacagaatatctattacgtgaatgggtgcaaatgcatcataatccacagtacgcg
cgagatcccacgaaagcgtttagcatatttgttcatcaaatgaacattcatggcatcctg
aagactgacgatctcatcacgagatttttcaagttgagcacacaaatgtgcgtcgacctt
tgttaccgaactctatcagaaactggcttagctccctcgataatacgtgcgaagtgcttc
cattcattggatgcgttcgtacgtctcgtagcacttctggtgaagcactcgggcgatgct
accaatacccacaccaaaattaatcttttgaataaggtgctgggtatcgtcgccggtgtg
ctgttacaggaccacgaaatacgtggtgccgatttccaacaattgccgtatcatagaatc
tttatcatgctgttcttggaattgtgcgcgcccgagccggtactggaggccgtgaatttc
caagttctaactgccttctgccatactctgcacattttgcgaccagcaaaagcatcaggc
ttttgttacgcctggctggagttggtttcgcaccgagtcttcattggtcgcatgctggct
attacgcccgggcaaaaatgttgggggatgtacgcgcaacttcttatcgatctgttcaag
tacctcgcaccttatcttcgaaacgcggagctagcgaagcctgtgacgagtctgtacaaa
gggaccttacgcgtgttgctcgtactgcttcatgactttccggagttcctttgcgattat
cattatggattttgcgatgtgataccaccgaattgcatacaaatgagaaatctgatcttg
agtgcgtttccgagaaatatgcgcctacccgatccgttcacgccgaatctgaaggttgat
atgctgcaggagatagcgcagcctccgcgtgttctcaccaatttcgcgtcaacaatacag
ccattgactttcaagaaagaactcgattcttatctgaaggctcgtgcaccggtcaccttt
ctatccgaacttcgtagcaatttgcaagtgtcgcaagaggccggcgtgcgttataatatt
caactgatgaatgctctagtgctctatgtaggcacacaagctatactatttattcgcagc
aaaggtcacgctcctaacatgtctactatcgcacattccgcacacatggatatcttccag
aatttggccgtagatctggataccgaaggccgatatttgttcctaaacgccatagcgaat
cagttacgatatcctaatagtcacacgcattacttcagttgtacgattctctacttattc
gcggaagcgaatacggaagcgatacaggaacaaatcacgagggttcttctggaaagactg
attgtaaacagaccacatccatggggacttctcatcactttcatcgaactgatcaagaat
ccgacgtataaattttggtcacatgagtttgtacattgcgcgccggagattgaaaaattg
ttcgaatctgtagctaggtcatgtatggtacagaagcaggtacccacaacggaaacggag
attccagagtga
DBGET
integrated database retrieval system
