KEGG   Triticum dicoccoides (wild emmer wheat): 119267239
Entry
119267239         CDS       T07278                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119267239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119267239
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     119267239
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 119267239
NCBI-ProteinID: XP_037404496
LinkDB
Position
1A:complement(230937763..230943934)
AA seq 910 aa
MEADEAPHPPPPWKQNKSAVAVEASSGSLASAAARLSARSRAIPPARDFHFYNNFPSFKS
PVAAAAARAESSLGVLGASTLLPKQQQQQPPFPTEDLDDAYDWLVARNDDLLEMFAASAD
EFKALREKEEAQGRKVAAEEMAGDGFQVVYGKKKKKVGMGEEGVGRSEAFGSSGSVRMAT
MDRAAASGPKPKVPFHIPTIPRPQDVHRIVVDNTSKPFDHTFLERSDDGARAIHPLEKLP
MEQLFDRRVPESEPLKPPALDDTPFTFVEDRKTLEVLVTKLKSATEFAVDLEHNHYRSFQ
GLTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIY
VCNLFDTGQASRILQMDRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYAREDTH
YLLYIYDLMRLRLVNEPSGDDLLLEVCKRSNGICLQLYEKELLTDSSYLYIHGLKENDLS
ARQLAVLAGLYQWRDGVARAEDESTGYILPNKTLLEIAKQMPVTTGRLKRTVKSKNKFLE
HYLGHVITIIRNAVANADAFESIAEQLKKGRLEELMAAEAKDGSEDSEMIPAVDADSNES
NLQLIAEPDVAPTVITNVHTASFCTGNVTSGASLGNLQLDNITPETKSFGALPGATGQAD
TVIPSNGGGQQQVIKATVQVSKRPTAFGALLGKPSTARRPNLFPGFSSDQNKSKVEKIKS
SVVLPFHHFSGGANPPATSPPVAKSSEHEAEIMCEDPVSRMEEVIQLDTGTDDPENGNAD
GQSDCKPGDTDVSSSPPEPSSGIEQRCRSLDESRDLQQKHQAPEELEFNDQLKAFDYAEA
RKNTSFGEVRSERRKDNAVASAINVDSGDKRKSLKQTPGAGGGEEDEGNFQNPRRRQAFP
PSGNRSATYH
NT seq 2733 nt   +upstreamnt  +downstreamnt
atggaagcggacgaggcccctcacccaccgccgccgtggaagcagaacaagtcggccgtg
gccgtcgaggcctcgtcgggctcgctcgcctccgccgccgcgcgcttgtcagcccgctcc
cgcgcgatccctccggcccgcgacttccatttctacaacaacttcccctccttcaagtcc
cccgtcgccgccgccgccgccagggccgagtcctccctgggcgtcctcggcgcctccacg
ctcctccccaagcagcagcagcagcagccgcctttccccacggaggacctcgacgacgcc
tacgactggctcgtcgcccgcaatgacgacctgctcgagatgtttgccgcctccgcggac
gagttcaaggcgctgcgggagaaggaggaggcccagggacggaaagtcgcggcagaagag
atggcgggggacgggttccaggttgtctacggcaagaagaagaagaaggtgggtatggga
gaggaaggagttggcagaagtgaggcctttggatcttctggttcggtgaggatggccacc
atggatagggctgcagcatcagggccaaagccgaaggtgcccttccacatccccaccatc
ccacgcccgcaggacgtgcaccgcattgtggtggacaacacgagcaagccattcgaccat
accttccttgagcgcagcgatgacggtgcccgtgccatacacccactggaaaaactcccc
atggagcaactatttgacaggcgtgttcctgaaagtgagccattaaagccacctgcttta
gatgacaccccttttacatttgttgaagaccggaaaaccttggaagtgttggtgacaaag
ctgaagagtgcaactgagtttgctgttgatttggaacacaaccactataggtcttttcag
ggtctcacctgcctgatgcagatttcaactagaaccgaggactttattgtagacactctt
aagctccgcaattgtcttggtgagaacttgagagaagtttttcaagatccaactaagaag
aaggtaatgcatggggcaggtcgtgatataatatggcttcaaagagactttggaatatac
gtgtgcaaccttttcgacacagggcaggcttcaagaatcttacaaatggaccgcaacagc
ctggagcatcttctgcaatatttctgtggagtgacagcaaacaaagaatatcagagtgca
gattggaggctgaggccacttcctgatgaaatgaccaagtatgctagagaagatacacac
tatctgctctacatatatgacttgatgcgattgcgattggtgaatgagccttcaggcgat
gatcttcttttggaggtttgcaagcgcagcaatggaatttgcttgcaactatatgagaag
gagctgctgactgattcatcatacctttacatacatgggttgaaagaaaatgacttgagt
gcaaggcagctggcagttcttgctggtctatatcaatggagagatggcgtcgctcgtgct
gaggatgagagcactggttatatattacccaataagactctacttgaaatagccaagcag
atgcctgtgaccactgggaggttaaaaagaacagtgaagtcaaaaaataaatttcttgag
cactatctcggacatgtcattactatcataaggaatgccgtcgcaaatgccgatgctttt
gaaagtatagctgagcaactgaagaagggaaggctggaagagttaatggcggcagaagcg
aaggacggcagtgaagacagtgaaatgattcctgccgtcgatgctgatagtaatgaaagt
aatcttcagctgattgctgaacctgatgtagctcccacagtgattacaaatgtccatact
gcttctttctgtaccgggaatgttacgagcggagcttctttaggtaatttgcaactagat
aacatcacacctgaaaccaagagctttggggcgttgccaggcgctaccgggcaagcagat
acagtgataccgagcaatggtggtggtcagcagcaagtaataaaggcaacagttcaagta
tcgaagagacctacggcttttggtgctctgttaggaaaaccctctaccgcaagaaggcca
aatctatttccaggattttcaagtgaccagaataaaagcaaggtggagaagatcaagtct
tccgtggtactgcctttccatcatttctcaggcggtgcaaatcctccagcaactagccct
ccagtagcaaaatcgtcggaacatgaagcagaaatcatgtgcgaggatcctgtgtctcgg
atggaggaagtgattcagctggacactggaacagatgacccagaaaacggcaacgcagat
ggacagagcgattgcaaacctggagacaccgatgtgtctagctcccctcctgagccttcc
tctggcatcgagcagcgctgcagatccctcgacgagagcagagaccttcaacagaagcac
caagcaccggaagaactggaatttaatgatcagctgaaggccttcgattacgctgaagct
agaaagaatacttcatttggagaagttagatctgagagaagaaaggacaatgcagtggcc
agcgctatcaatgtggattctggagataaacggaaaagtttgaaacaaacccccggtgcc
ggtggcggcgaagaggatgaagggaacttccagaatccacgaaggcgacaggctttccca
ccttctggcaacaggagtgctacgtaccattag

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