Triticum dicoccoides (wild emmer wheat): 119275258
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Entry
119275258 CDS
T07278
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119275258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119275258
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119275258
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119275258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
119275258
NCBI-ProteinID:
XP_037411965
LinkDB
All DBs
Position
1A:complement(388581253..388601359)
Genome browser
AA seq
2398 aa
AA seq
DB search
MIPFNSAVADEVRSLVQGADDSTVDSIYRELCQLADCSPDGCILLLQVCLDEVLLNAGVA
KYSQSKQDLLSTVFRYCLDKPYFSTCFCEALRTLSVSDVFLETLSNELDLSRAERVGIGL
ALSDAENIGLNLKGQRFSIAQIEELCKNPAQSISNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLFKVKEMPFHVPVLVQDSNVRPASSHMEMYIGSFDDDFDSLLSEIGKEISMADIITE
LGYGCTADIAHCKDTLSLFEPLDDLGISKLLGAVVTTAAGLGEAHNTYSTFISAFGNSQT
NDSFQSTAWDINVLVDSINEIAPQTNWTSVMENLDHEGFSIPDEGAFRLLMSIYSRACKD
PFPLHAICGSLWKNLEGQLSFLKHAVAAPADTFTFKHSSRKLVFPDLANHIQGNQAWYCL
DLLEVLCQLADLGYATLARPLLDYPLSHCPDVLLLGVSQINTAYNLLQYEVLSCVFPALL
KDTKNSSLMNYLWHLNPSLTLRGFVDAHSDIICLLRTVDICQDLKILSAVLDSTPLAFSI
KLATVSFRNDHSNLEKWITEKFSAHREAFIEECVKFLKESVVNTTHAAAEGVIQQPQATI
TNICWESCPLFIKVLQSHSGQLLTNQLVDELNRVEAAYESRTQSSLGRDIPTSEGGSDDI
ETQANIYFHQMFSEQISIDAMIQMLARFKESTNKRELAIFNCMISNLFEEYKFFPKYPDT
QLKLAAVLMGSLIKHQLVAHLGLGVALRSVLDALRKSIDSKMFMFGTTALEQFMDRVIEW
PQYCNHILQISHLRGTHAELVSAIEQALAKISSSQNEPNIGNIFSVDPHGSGSPSIGNTE
VSDASWQFTNPTPAQLERPSSFPLQQRYQGFLGERSKGSTNSVQAKNILSISQPTASTPG
DLSMAPKVTAPPSLQASPHHSATISASSQSTNFLRPRSSAPSGTRSPYTTGFGAALNIET
LVAAAERRDTSVEAPPSEVQDKIFFMINNISNSNLDAKAREFNEVSQDQYYPWFAQYMVM
KRASIEPNFHDLYLKFFDKVNSKALNKEMVKATYENCKALLQSDLIKSSSEERSLLKNLG
SWLGKLTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYRPPNPW
TMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRTRQLEGNPDFSN
KDVTASQTPVVAEVSSGMIPAKNVVEVQPELTSTSRATSIPNMLNQYAPPLRLPPNSMVE
DDKVALIMPDQVSPSQTPSPLPALFTLSQLMAAIPRADIYFRINEKLSSLGSLQYSKIMD
VALDKAIKEIIGPVIQRSVTIATRTTKELILKDLAMESDDSAVSRAAHLMVGTLAGSLAH
VTSKEPLRVALSSHLRSLIQNLNNNSETTEQIVHILINDNLDLGCALIETVATRKAVEMI
DGEIKQPFSQLRRQKELLGSGYYDAFPYTQGLARVPDALRPKPTGHLCASQQRVYEDFIT
VWHSQSSQNAGATSSATAVTAAPGNSSIPRLYSPNLVQPADLVPEESDHGTTQLLSVSTQ
IGTSDTFAQAGGTTNIASVFPPMSSNDIPVGESTAGTKDLGSMVPLSPTTAVDHMESVFA
EPLSTDNGLDRYHQVAQKLEALIANDGKDVEIQSVIAEVPDILHRCVKRDEAALLIAQKV
FRSLYENASKSTYLTWLLATLAAIRDVCKLIVKEITSWVIYSEEENKFNLDIVTGLIRSE
ILNLGDYDVHLAKIIDSGRNKTATEFAISLVQTLITQEPSGVSELCNVVDALSKLAIRPG
SPESLQQLIEIARSNFKNAASFAAMKDEKVRHARDNKVLSGRPSSIYKEENDSAFADAVS
FQDQVAVLFSDWCHICDHPTMGDSAYSHYIVQLQQHGLLKGDDLTDRFFHTLTELAITHA
VVSEQVIAPGGMSQQPAQQLQISYFSIDSYSKLVTLMFKYGVDLGPNKGSLLLKILSITT
RIIQKDAEEKKVSFNPRPYFRLFINLLSELSTADLHDGASFQVLTAFANAFHVLQPLRVP
AWSFAWLELVSHRSFMPKLLLCNSQKGWPFFQRLLGDLFKFMEPYLRNAELGQPIQLLYK
GTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKID
LLAEISVAPRIMSDVEGALKAKQMKTQVDEYLKRPEGSSFLTDLKQKLVLPPNEANVAGT
RYNVPLINSLVVYVGIQAVQQLQHNKANASASAQQMNQSPQVDVFQIETATEVFRNLIVN
MDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFAEATQDIVQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPRYSFWARSFTRCAPEIERLFESVARSCGGKAAEEGVLADGGH
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcaattccgccgtcgccgacgaggtccgctccctcgtccagggcgccgac
gactctaccgtcgactccatctaccgcgagctctgccagttagctgactgcagtcctgat
ggttgcattttactgcttcaagtttgtttggatgaggtgctgctgaatgccggggtggca
aaatactctcaatcgaaacaagatcttttatccaccgttttcagatattgtctggataaa
ccatacttcagcacctgtttttgtgaagcactgaggactttatctgtcagtgatgttttc
cttgaaacgttgtcaaatgaacttgatctatccagagctgagagggttggtattggactt
gccctgtcagatgccgagaatataggcttgaatctgaaaggccaaagattttcaattgct
caaatcgaggagttatgtaaaaatcctgcacagtctatatcgaatgaccaaattcatgat
attgttgtgtttcttcaccagactgatggcctctcaaagcatatggattcttttactaac
attatttccctattcaaagtcaaagagatgccattccatgtccctgtccttgttcaggac
agcaatgttcggccagcttcaagccacatggagatgtacatcggtagctttgatgatgat
tttgattcccttttatctgaaatcgggaaggagataagcatggctgacatcattactgaa
ttgggttatggatgtactgctgatattgcacattgtaaagatacattatcactttttgag
cctctcgatgatttgggaatatctaagttgcttggggctgttgttactactgccgctggt
cttggtgaggctcataacacatattcaacattcatttcggcttttggcaacagccaaaca
aatgactcatttcagtcaacggcatgggatatcaatgttctcgtggactcaatcaatgaa
attgctccacaaacaaattggacaagtgtaatggaaaacctggaccacgagggtttcagt
atccctgatgaaggggctttccgtctattgatgtctatatattctcgggcttgcaaggat
ccatttccgcttcatgccatctgtgggtcactgtggaagaatttagaagggcaattatca
ttcttgaaacatgcagtggctgccccagcagatacatttacatttaaacattcttccagg
aagctggtatttccagacttggctaatcatatccaaggcaatcaggcttggtactgccta
gaccttttggaggtgttatgccagcttgctgaccttggctatgcaacattagcgcgaccg
ctgctggactacccactcagtcattgtccagatgtgttacttcttggcgttagccaaatc
aatactgcatacaatctcctccagtatgaagtattgtcatgcgtattccctgctttattg
aaggacactaaaaatagcagtctaatgaactatctctggcatctcaacccttcccttact
ctccgaggatttgttgatgctcattctgatataatttgtcttttgagaactgttgatata
tgtcaagacctaaagatcctatccgctgtccttgattccactcccttagcatttagcatc
aaacttgccacagtttcctttcggaacgatcatagcaatctagagaaatggataaccgag
aagttcagtgcacacagagaggcttttattgaggaatgtgttaaattcttgaaagaaagt
gtggtcaacacaactcatgctgctgcagagggtgtcatccaacaacctcaagctactatc
acgaatatttgctgggaatcatgtcctttatttataaaggttcttcagtctcactctgga
cagctgttgactaaccaactggtggatgaactaaatagagtggaagcagcgtatgaatca
aggactcaaagttctcttggaagggacattcctacttccgagggaggttctgatgacatt
gaaacacaggcaaatatatattttcaccagatgttttctgaacagataagcattgatgct
atgatacaaatgcttgcacgcttcaaagagtctacgaacaagagggagctagcaattttc
aattgcatgatctcaaacctgttcgaagagtacaagttcttcccaaagtatccagataca
cagcttaagctagctgctgttcttatgggctctctcattaaacatcaacttgtggctcac
ctgggacttggagttgctctacgcagtgttcttgatgccctgcgtaaatctattgattca
aagatgtttatgttcggcacgacagcgctcgagcagtttatggatcgtgtaatagagtgg
ccgcaatactgcaaccacatattgcagatctcacatcttcgtggaacacatgccgaatta
gtctctgcaattgagcaggcacttgccaagatatcatcaagtcaaaatgaaccaaatatt
ggcaacatattttctgtggatccgcatggttctggttcaccatctatcggaaacacagag
gtttctgacgcatcatggcagttcaccaatccgactccagcacagcttgaacggccttct
tcttttccactgcaacagaggtaccagggttttcttggggagaggtccaaaggttctaca
aacagcgtccaagctaagaacattctatctatcagtcaacctactgcttcaacacctggt
gatttgtctatggctccgaaggttaccgcaccaccatccttacaagcttctcctcatcat
tctgccactatttcagcctcttcacaatccactaattttctgaggcctagaagttcagct
ccttcaggcactcgatctccatacactacaggatttggagctgctttaaatattgaaact
cttgttgctgcagcagaacgaagagatacatcagttgaggcccctccatctgaagttcaa
gacaagatattcttcatgatcaacaatatttccaattctaacttggatgctaaggcaagg
gaatttaatgaggtttctcaggatcagtattatccttggtttgcgcaatacatggtcatg
aaaagggcaagcatcgaaccgaattttcatgacttgtatttgaagttcttcgacaaagtt
aactcaaaagcgttgaataaggaaatggtgaaagctacatatgagaactgcaaggctttg
ttgcaatcggatcttataaaatcaagttccgaagagcgttcgttgctaaaaaatctgggt
agttggctaggaaagctcaccataggaaggaatcaaacgttacgagcgaaggaaattgat
cccaaaattcttatagttgaggcatatgaaaggggtctgatgatcgcagtcattccgttc
acttcaaagattcttgaaccttgccattcaagtatagcatatcgtcctccaaatccatgg
acaatgggtattcttagcctacttgctgagatctataatctacctaatctcaagatgaac
ctgaagtttgacattgaggtcttgtttaagaacctcagtgtggacatgaaagatgtaaaa
ccatcttctcttcttaaagatcgtactcgtcaacttgaaggaaatccggatttttctaat
aaagatgtcactgcatctcaaacaccagtcgttgcagaggtttcctctggtatgatccca
gcaaaaaatgttgttgaagtgcaaccagagttaactagtacctcacgggctactagcatc
ccaaatatgttaaaccagtatgcaccacctcttcgtcttcctccaaacagcatggttgaa
gatgataaggttgctttaataatgcccgatcaggtttcaccatctcaaacgccgtctcca
ttaccggctttgtttactcttagtcagcttatggcagcaatacctcgcgcggatatatat
tttagaattaatgaaaagcttagttctcttggctcactgcaatatagcaaaatcatggat
gttgctttggataaggctattaaagaaattataggccctgttattcaaagaagtgttaca
atagctacccgaactactaaggagcttattcttaaggatttagcaatggaatctgatgat
agtgcggtatctcgcgctgcacatttgatggttggcacgctagctgggagtctagctcat
gtaacttccaaggagcctcttcgtgttgctttgtcgtctcatcttcgaagtctcattcag
aacctgaacaataacagtgaaaccactgagcagattgttcatattctgatcaatgataat
ctagatcttggatgtgcgctaatagagactgttgcaacacgcaaggctgttgagatgatc
gatggagaaatcaagcagcctttttcacagctaaggaggcaaaaggagttgcttggttct
ggatattatgatgcttttccttacactcaaggtcttgcacgtgtcccggatgcacttcgt
ccaaagcctactggccatttgtgtgctagccaacaacgagtgtatgaggacttcattact
gtatggcacagccagagtagtcaaaatgctggagctaccagttctgctacagccgtgact
gctgcaccaggcaattccagtatacctcgactttatagcccaaatttggtacaaccagca
gatctggttcctgaagagtcagatcatggtaccacacaacttttaagtgtttccacacaa
attggtacaagtgacacttttgcccaagctggtgggactactaacattgcatctgttttc
ccccctatgtcatctaatgacattccagtgggtgaatcaacagctggaactaaagatctt
ggctctatggtgcctctttcacctacgactgctgttgaccatatggaatctgttttcgct
gaacctttgagtactgacaacggattagacagataccatcaagttgcacagaagcttgaa
gccttgattgccaatgatggtaaagatgtagaaattcagtctgttattgcagaagttcct
gatattttacacagatgtgttaagcgggatgaagctgcattattgattgcacaaaaggtt
ttcagaagtttgtatgaaaatgcatcaaagagtacttatctcacatggcttctggcaact
ttagctgcaatacgtgatgtttgcaaacttatcgttaaagagataacaagctgggtaatt
tattctgaggaagaaaataagtttaaccttgacatagttactggactaattcgttctgag
attcttaatcttggggattacgatgttcatctagcaaagatcattgatagtggaagaaac
aagactgcaacagagttcgctatatcacttgtccagacattgattacccaagaacccagt
ggcgtttctgagctttgtaatgttgttgatgcattatcgaagcttgcaatcaggcctggt
tcacctgaatcattgcagcagttgattgagattgcaaggagtaatttcaagaatgctgct
agctttgctgccatgaaggatgaaaaggttaggcatgcaagggataacaaggttttatct
ggccgtccttcatcaatatataaagaagaaaatgattctgcttttgcggatgctgttagt
tttcaagaccaggttgcagttttattctcggactggtgtcacatatgtgatcatccaact
atgggtgattcagcatatagtcattacattgtgcagttgcaacaacatggcttgcttaag
ggagatgatttgactgaccgcttcttccatactctcacggaacttgccatcacacatgct
gttgtctctgagcaagttattgctcctggtgggatgtctcagcagccggcccagcaactc
cagatttcatatttctcaattgattcatactcgaagcttgtgactttaatgttcaagtat
ggcgtggatttaggaccaaacaaaggcagccttcttctgaagattctctccataaccact
aggatcattcagaaagatgccgaagaaaagaaagtttctttcaatcctcggccatatttt
agattatttataaatttgctaagtgagcttagcactgctgaccttcatgatggtgctagt
tttcaggttttgactgcatttgcaaatgcttttcatgtgcttcaacccttgagagttcct
gcatggagttttgcttggcttgaattagtaagccatagaagcttcatgccgaagttattg
ctgtgcaattcacaaaagggctggccattcttccagaggctgcttggtgatttgttcaaa
tttatggaaccatatctaagaaacgctgagctgggacagcccattcagcttttatacaaa
ggaactttgagagtgctgcttgttctactccatgactttcctgagttcctctgtgactac
cacttcagtttctgtgatgtgattcccccaagctgcattcaaatgcgtaatgttattctt
agtgcatttccacgcaatatgagacttcctgatccctctactcctaatttgaagattgac
ctgctagctgaaatttcagtagctccaagaatcatgtctgatgtggaaggtgctttgaag
gcaaagcaaatgaagacccaggttgacgagtacctcaagagaccagaaggttcatccttt
ttaactgatttaaagcagaagttagtgctgcctccaaatgaagctaatgttgctgggact
cgttataatgttcccttaattaattcgctggtcgtctatgttggcatccaggctgtgcaa
cagttacagcataacaaggcaaatgcatcagcatcagcgcagcaaatgaaccaaagtcct
caggtggatgtttttcagattgaaacagccactgaggtcttcagaaatcttatagtgaat
atggataccgaaggccgttacctcctcctgaacgcaattgctaaccagctacgctatcca
aacaatcatactcactacttctccttcatcattttgtacttgtttgctgaggcaacacag
gatatcgtacaggagcagataactagagttcttttagagcgcctaatagttaatcgtcct
catccctggggattacttattactttcattgagctcataaagaatccacgctatagcttt
tgggctcgatcctttacacgctgtgcaccggagattgagaggctgtttgagtctgttgca
aggtcttgtggaggtaaagctgcagaagagggagttctcgctgatggtggtcattag
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integrated database retrieval system
