Triticum dicoccoides (wild emmer wheat): 119285405
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Entry
119285405 CDS
T07278
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119285405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119285405
Enzymes [BR:
tdc01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
119285405
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
119285405
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
119285405
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
119285405
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119285405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
nSTAND3
AAA_25
AAA_19
AAA
MeaB
Zeta_toxin
NACHT
AAA_29
KTI12
AAA_16
ABC_tran
AAA_30
AAA_22
AAA_5
AAA_28
ARM_TT21
ETF
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
119285405
NCBI-ProteinID:
XP_037420572
LinkDB
All DBs
Position
4A:135987316..135991208
Genome browser
AA seq
788 aa
AA seq
DB search
MDPGEGGSPAAPSTSGAAPGAAAEIKEDAGKQVVVILIGPPGSGKSTFAEAVMAGAAAAG
RPWARVCQDTIGKGKAGTKIQCLKAAADALKEGKSVLIDRCNLEREQRSDFVKLGCTVQA
DVHAVFLDLPAKVCISRSVSRTSHEGNVQGGMAAMVVNRMLKNKQAPLLTEGFSRITFCT
DDDDIKKAVDMYSALGPSHSLASGVFGQKSKGPVQTGIMKFLKKADTSSINKSSGTMVTS
SERKTGQQNTTLKQENLEAGGACSMQVEKKLDNLKEKEEQSKEKVSSDTSLCTLAFPSIS
TADFQFDLEKASEVIVDAATDFVQKHDNVRLVLVDLSQKSRILSLVKDKAAKKSFDSSRF
FTFVGDITQLHSKGGLQCNVIANAANWRLKPGGGGVNAAIFNAAGEALQHATKECADTLR
PGNSIAVPLPSTSPLHQQEGVTHVIHVLGPNMNPMRPDCLKSDYTKGCKVLREAYNSLFE
NFASIARSYPGKQNDETSSRKSASGVISPNDSKTKREGSDDSQRTKKCKLLPSILTSSQH
HERKGTNTLSYHDNSMGSSDAPNQAREEDNKKNGAVTNKTWGSWAQSLYEVAMHPEKYKN
ADSILEISDEFVVLKDLYPKAKRHVLVISRTDGLDSLADVKKVHLPLLRSLHSAGLKWAH
KFLEEDASLTFRLGYHSVPSMRQLHLHVISQDFNSPSLKNKKHWNSFTSAFFLDSVDVMD
EVDQHGSVTISPDERLLAMELRCHRCRSAHPNIPKLKTHIAACKSPFPSHFLKKDKLLSA
STVRTGCS
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatcccggcgaaggcggttcccctgccgctccatcgacttccggagcagccccaggc
gcggccgcggagattaaggaggacgctggaaagcaggtggtggtgattctcatcggccct
ccgggcagcggcaagtccacgttcgccgaggccgtcatggccggtgcggccgccgccggc
cgcccatgggcccgcgtctgccaggatacaattggaaagggcaaagctggaaccaaaata
cagtgtttgaaggccgcagcggacgctttgaaggagggaaagagcgttctcattgaccga
tgcaacttggaacgagagcagcgctctgattttgtgaagcttggctgcaccgtacaagcg
gatgtgcatgctgttttcttggatcttcctgcgaaggtttgcatctcacgctcggttagc
cggactagccacgaaggaaatgtgcagggcggaatggctgccatggttgtgaaccgcatg
ctaaagaacaaacaggcacccttgctgactgaaggtttcagtcggatcacgttctgtacg
gatgacgatgacattaagaaggcagttgacatgtatagtgctttagggccttcacatagt
cttgcttcaggagtatttggtcagaagagcaaagggcctgtacaaactggtataatgaaa
tttctcaagaaggcagatacttctagcatcaacaagtccagtggaactatggttacatca
agtgaaagaaagacagggcaacaaaatacaacgttgaaacaggagaaccttgaagctggt
ggcgcctgttcaatgcaagtagaaaagaagttggataacctgaaggaaaaagaagaacaa
agtaaggaaaaggtttcttctgacaccagtttgtgcactctggcatttccatcgatttct
actgctgacttccagtttgatcttgagaaagcatctgaggttatagtagatgcagctact
gatttcgtgcagaagcatgataatgtaagactagttcttgttgacttgagccaaaaatca
agaatattgtcattagtcaaggacaaggctgctaagaagagctttgactccagcagattt
ttcacatttgtgggagacatcactcagttgcactccaaaggaggtcttcaatgcaacgtc
attgctaatgctgccaactggaggttaaaacctggaggtggaggggttaatgcagctata
tttaatgctgctggagaagctttacagcatgcaaccaaggaatgtgctgacacgttgaga
cctggtaactctattgctgttccacttccatcaacttcccctctgcatcaacaggaaggg
gtgacccatgtcatacatgtgctcggaccaaatatgaacccaatgcgtccagattgtctg
aagagtgactataccaaagggtgtaaggttcttcgtgaggcatataattcactttttgag
aactttgcatccattgcccggagctacccagggaagcagaatgatgaaacttcatcaagg
aagtcagcatctggagtgatttcacctaatgattcaaaaacgaagcgagagggcagcgat
gattctcaaaggaccaaaaagtgtaagttgcttccatctattttgacttcaagtcaacac
catgagcgcaaagggaccaacacactaagttatcatgataactccatgggttcatctgat
gctccgaaccaagcaagagaggaagacaacaagaagaatggtgccgtcaccaacaagact
tggggatcctgggcacagtccctttatgaggttgccatgcacccagaaaaatataagaac
gcggattctatccttgagatatctgatgaatttgttgttctgaaggacctctatcccaag
gccaaaaggcatgtgttggtgatatctaggacagatggtcttgattctctagcagatgtc
aagaaagtgcacttaccactgcttaggagtttgcattcagctgggctgaagtgggcacat
aagttcctagaggaagacgcatctctgacgttcaggcttggatatcattcggttccgtcc
atgcggcagttgcacctccatgtcataagccaggatttcaactcacccagcttgaaaaac
aagaagcactggaactccttcaccagtgcatttttccttgattctgtcgatgtcatggac
gaggttgaccagcatggatccgtgactatcagccctgacgagaggcttctcgcaatggag
ctaaggtgccacagatgcaggagcgcccacccgaatattccgaagctcaaaacccacatc
gcggcctgcaagtcccccttcccctcccattttctgaagaaagacaagctgttgtcagct
tccacggtgcgtacgggctgcagttag
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