Triticum dicoccoides (wild emmer wheat): 119292241
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Entry
119292241 CDS
T07278
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119292241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119292241
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119292241
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119292241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
119292241
NCBI-ProteinID:
XP_037426972
LinkDB
All DBs
Position
4B:complement(671782886..671802108)
Genome browser
AA seq
2408 aa
AA seq
DB search
MVPLSHPGVAAEVRLVLQGATDADHESVRRELRQLVDYGHDGCLLVLQVCLDEVLLNDRE
AKNLQLKHDLLSATFRYCLDKTYFSTCFCEALMRMKTATDGLLETLSSALELSAAEKVGI
GLALSDSDNSGMKLKGQQFAIAQIEELSLNPNQLVSNNQIHEIVVYLHQTDGLTKHMDTF
SNIASLLEVGQSPFFAPIPKEQYDVQSINHSRHLEMYLDSTNDDFESLLSEIGKEISMAD
IVTELGYGCTVDSTQCKEILSTFQPLDDVAISKLLGAVIGTQNSVAEVHNTYATFVSAIR
NTHLSESPQLTTWNTDVLVDSINELAPSTNWVHVMESLDHEGFSIPDEAAFCLLMNIYGR
ACKDPFPLHAVCGSMWTNTEGQISFLKHAISTPATIFTFAHSSRLLALPDFASLGPGNHA
WFCLDLLEVLCQLAEVGHTVSVRSMLEYPLGHCPELLLVGLGHINTAYNLLQFEVLSCAF
PAILKDTTKRNVVNYLWHINPCLTLRGFVDAHSDPSCLLRIVDVCHDLKILSAVLESTPF
AFSIRLVAAACRKDHSHLEKWLTEKLTVYKDSFVEECVNFLKEAMNAASYAVEGTTEQPQ
ASVVDMYWEACPPFIKVLQSHLGQLLSNQLADELRDLCALYESRNQGPVARDIPTSEGGS
DDVEVEANAYFHQMFSGQINIDVMIQMLTRFKESPDKREQSIFNCMISNLFEEYKFFTKY
PDKQLKLAAVLFGSLIKHELVAHLGLGIALRAVLDALRKSVDSKMFMFGTTALEQFMDRV
IEWPQYCNHILQISHLRATHAEMVSAIERALARISSSQNEPNAGNLLSTEQLLSGSSSIE
AMEASEPSWQLMGTSPTQLGRTPYPLQQRQPSVLGDRSKISIGTSQNKSILPSQPSVPPA
SADSAFNLKTTVPPSSLAHPTSMSNTAHSTSFLRPRNTSTVLPRQHSYTTGFGNALNIET
LVAAAEQRDNPIETPPSEVHDKILFMINNISSSNMEAKAKEFNEVLQEQYYPWFAQYMVM
KRASIEPNFHDLYLKFFDKLNSRSLSKEMLKATYENCKVLLRSDLIKSSSEERSLLKNLG
SWLGKFTIGRNQTLRAKEIDPKSLIVEAYERGLMIAVIPFTSKILEPCNSSIAYRPPNPW
TMGILSLLSEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPTSLLKDRGREVEGNPDFSN
KDVASSQTPVAAEVSSGVNPPIKHVDLQPEVNSTSRALSLPTMYTAPVRLPPNSMVEDDK
IALMMPEQVPSHTLTQVSSSQTPLVSLSPSPLSLTQLLSLIPHDEIRFKISSKLLPFGSQ
LQFSKIMGVALDKAIKEIILPVIERSVSIASKTTKEIILKDYATESDYSAANRSARLMVG
TLAGSLAHVTCKEPLRVALLSHLRSLTQNLASNSETLERIVLVLINDNLDLGCASIESVA
ARKAVDSIEGEITQSFSQQRKKREAAGPAYYDSFTYAQGPFAPVPEVFHTKAESPAQQRV
YEEFVHVWQSHGQSVGAAGSGSSGTAAVSSNFGVPRAYSPSLAQASSAFLSAQTAPLTLT
QPTELVYEELIPGAAQLSSDSPAQVGTGDSSGWLGGTIGDASTSPPLMSNELPAGGIMDL
NVMTPPPATVSDNLGSGLPDTLSTGDAMERYEQVSQKLEVLIAKDGKDVEIQSVIAEVPD
ILLKCVNRDEAALAVAQKVLRSLYDNTSNSGSVMWFLATLVAIRDVCKLVVKELTNWVIY
SDDEKKFNSEIIFALIRSDLLDVREYNVHLAKLIDGGRNKIATEFAMSLLQTLITQDSAS
ISELQDVVDVLSKISRRPGSPELMQQVNEIARNNANNAPGFAFGKDKKVLPNRANKEENS
VSDATVADSVGFQDQVAHLFSEWCQICDHPNASDAAYSRFVMQLQHIGLLKGDEFTERFF
RILTELAVAHSLVSEQINAPGGLSQQSSHISYFPIDSYSKLVSVVIKNCSVEIGPNKGSL
LPKILSVTIRVIQKDAEEKKASFNPRPYFRLFINWLNDLSNSELHHDGANFQVLAAFANA
FHVLQPSRIPSLSFAWLELVSHRTFMARLLTGNSQKGWPFFQRLLIDLFKFMEPYLRTAD
LLEPVHLMYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRNVILSAFPRNMRLP
DPSTPNLKIDLLAEISLPPRIMSDVDGALKSKHMKAEVDEYLKRPEGSSFLNDLKQKLLL
PQNEANVAGTRYNVPLMNSLVLYIGIQAVQQLQANKANASASAQQINHSTMDIFQIETAT
EFFRYLVTNLDTEGRYLFLNAIANQLRYPNSHTHYFSFIILYLFAEASQEHIQEQVTRVL
LERLIVNRPHPWGLLITFIELIKNPRYNFWNRAFTHCAPEIKQLFESVAKSCGGGAGKAV
DDGSDVSH
NT seq
7227 nt
NT seq
+upstream
nt +downstream
nt
atggtcccgctgagccaccccggcgtcgccgccgaggtgcggctggtgctgcagggcgcc
accgacgccgaccacgagtccgtccgccgcgagctccgccagttagttgactatggtcac
gatggatgtcttttggtgcttcaagtctgtttggatgaagtgctgctgaatgacagggag
gccaaaaacttgcagttgaagcatgatcttttgtccgccactttcagatattgtctggat
aaaacatactttagtacttgtttctgtgaggcactgatgcggatgaaaactgctactgat
ggcctcctggagactctgtcgagtgcactggaactctcagcagccgagaaagtcggtatt
ggtcttgcgctgtcagattctgataattcaggcatgaagctaaaagggcaacaatttgca
attgcccaaattgaggagttgtccttgaatcctaatcaattggtatcaaataatcaaatt
catgaaatcgttgtctaccttcaccagaccgatggcttgacaaagcatatggatactttt
agtaacattgcttctcttctagaagttggacagagtcctttttttgctcccatccccaaa
gagcagtatgatgttcagtcaataaatcattcaagacatttggagatgtacttagatagc
acgaatgatgactttgagtcacttctttctgaaattgggaaagaaataagtatggcggac
atcgtaaccgagttgggttatggatgcactgttgacagcacacagtgtaaggaaatactt
tccacttttcagcctcttgatgatgtggcaatatctaagttacttggggcagttattggc
actcaaaatagtgtcgcagaggtccataacacttatgcaacctttgtatctgctattcga
aatacccacttgagtgagtcacctcaattgactacatggaacacagatgttcttgtggat
tcaatcaacgaattggccccaagtactaattgggtgcatgttatggaaagccttgatcat
gagggtttcagtattcctgatgaagcagctttctgtttactgatgaatatatatggccgc
gcttgcaaggatccctttccgcttcatgctgtttgtgggtcaatgtggacaaatacagaa
ggccagatatcatttttaaagcatgcaatttctacccctgctactatttttacatttgca
catagttcaaggctgctggcacttccggactttgcaagtcttggtccaggtaatcatgct
tggttttgccttgaccttctagaggttttatgccagcttgctgaagttggacacactgtg
tcggtgcgatccatgctcgagtatcctttgggacattgccctgaactcctacttgttggt
cttggacacatcaacactgcctataatctcctccaatttgaagtgctgtcctgtgcattt
cctgctattctgaaggacaccacaaagagaaatgtggtgaattatctatggcatattaac
ccatgcctcacccttcgaggatttgttgatgctcattctgatccaagctgtctcctgaga
attgtggatgtgtgtcacgacctgaagatcctttctgctgtcctagagtccactccattt
gcatttagcattagattggtggctgctgcttgtaggaaagatcatagccatctagagaaa
tggctcactgagaagttaactgtatacaaggacagttttgttgaggaatgcgttaatttc
cttaaagaagctatgaacgccgcatcttatgcggtagagggtaccacggaacaacctcag
gctagtgtggtggacatgtactgggaagcctgtcctccctttataaaggttctccagtct
cacttgggacagctcttatccaaccaactcgcggatgaactaagggacttgtgtgctctg
tatgaatcgagaaatcagggtcctgtagcaagggacatccctacctcggagggaggttca
gatgatgttgaagtagaagcaaatgcgtactttcaccagatgttttctggacagataaac
attgatgtgatgatacaaatgctcactcgcttcaaagaatctccagataagagggagcaa
tcgatttttaattgtatgatctcaaatctgtttgaggaatacaagttctttacgaagtat
ccggataagcagcttaagctagctgctgtgctatttggatcccttatcaaacatgaactt
gtggcccaccttggacttgggattgctctacgcgctgttcttgatgccttacgcaagtct
gttgattcaaagatgtttatgtttggtacgacagcattggaacagttcatggatcgtgta
atagagtggccacagtactgcaatcacatattgcagatttcacatcttcgagccactcat
gctgaaatggtctctgcaattgagcgagcacttgccagaatttcatcaagtcaaaatgag
cccaacgctggcaacttgctttctacggagcagcttctttctggatcgtcatctattgaa
gccatggaggcatctgaaccatcatggcagttaatgggtacatctccaactcagctagga
aggacaccttacccgttgcagcaaaggcaaccaagtgtacttggagacaggtccaagatc
tccattggcacctctcagaataaaagcattttacctagtcagccttcagttcctccggca
tctgctgattcagcctttaatctaaagactactgttccaccttcttcattagctcaccct
acgagcatgtcaaatactgctcattccactagttttctgcgcccccggaatacctcaaca
gttttgccccggcaacattcctacactacgggatttggaaatgctttaaatattgagaca
cttgtagcagcagcggagcaaagagataatccaattgagactcctccatctgaagttcac
gacaagatcttgtttatgattaacaatatatcctcctctaatatggaagccaaggcgaaa
gaatttaatgaagtgcttcaggaacaatattatccttggtttgcacagtacatggtcatg
aaaagggcaagcatcgagccaaattttcatgatttatacctgaaattctttgataaactt
aactcaagatccttgagtaaggagatgctgaaagctacatatgagaactgcaaggttttg
ttaagatcagatcttatcaaatctagttccgaggaacgctccttgctaaaaaatttgggc
agttggttgggaaaatttaccattggaagaaaccagacattaagagccaaggaaattgac
ccgaaatcgcttattgtggaggcttatgagagaggacttatgattgctgtaattccattc
acttcaaagattctcgaaccttgcaattcaagtatagcatatcgtcctccaaatccgtgg
acaatgggaattcttagtctactttctgagatctataatctaccaaacctgaagatgaat
ctaaaatttgacattgaggtcctgtttaagaacctcagtgtggacatgaaagatgtgaaa
ccgacttcccttcttaaagatcgaggacgtgaagttgagggtaacccagatttttcaaac
aaagatgttgcttcatcccaaaccccagtggctgcagaagtctcatcaggtgtcaaccct
ccaataaaacatgtagacctgcagcctgaggtcaatagcacttcccgtgccctgagcctt
ccaactatgtatactgctcctgttcgtctccctcctaacagtatggtggaggatgataaa
attgctctaatgatgcctgagcaagtcccctctcacaccttgacccaggtctcatcttca
caaacaccattagtatcactatcgccatcgccactctctctaactcagcttttgtcgctg
attccacatgatgagatacgcttcaaaataagctcaaaacttttgccttttggctcacag
ttgcagttcagcaaaatcatgggcgtggctttggataaggctatcaaagagataatactc
cctgtcattgaaagaagtgtctcaatagcaagcaaaactacaaaagaaattattctgaag
gattatgcaacggaatctgattacagtgccgcaaatcgctctgctcgtttaatggtcggg
acattagctggaagtctagcccatgttacttgcaaggaaccgcttcgtgttgcgctactg
tctcatctccgaagccttactcaaaaccttgctagcaacagcgaaactcttgagcgaata
gtacttgttctgatcaacgacaatttggatcttggctgcgcaagtatcgagtctgtagcg
gcgcgcaaggctgttgattcgattgagggtgaaataactcaatccttttcacaacaaagg
aagaaaagagaggcagctggtcctgcatattatgactcttttacttatgctcaaggtcca
tttgcccctgtacctgaagtattccatactaaggcagagtctcccgcccaacaacgagtg
tatgaggagtttgttcatgtatggcagagccatggccaaagtgttggtgctgcaggttct
ggctcttctggtacagctgctgtatcgagcaattttggtgtacctcgagcttacagccca
agtttagcacaagcttccagtgctttcttgtctgctcaaacagctccacttacattaact
cagcctacagagctggtgtatgaggaattaattcctggcgctgcacaactttctagtgat
tctcctgctcaagttgggaccggcgactcttctggctggcttggtggaaccattggcgat
gcatccacatctccacccttgatgtctaatgaacttcctgcgggaggaataatggattta
aatgttatgacgccacctccagctacagtttctgacaatctaggatctggtttacctgat
actttgagcactggtgatgctatggagagatacgaacaggtttcacaaaagctggaagtc
ttgattgccaaggatggtaaagatgtggaaatccagtctgttatagcggaagttcctgat
atcttgctcaaatgtgttaaccgggatgaggctgcattagctgttgcacaaaaggtttta
agaagtttgtatgacaacacatcaaatagcggttctgtcatgtggtttctagcaacctta
gttgcgataagagatgtatgcaagcttgttgtcaaggagctaacaaattgggtaatctat
tcggacgatgagaagaagtttaatagtgaaatcatttttgcccttattcgttctgatttg
ctggatgtcagggagtacaatgttcatttagcaaagctaattgacggtggaagaaacaag
attgcaacagaatttgccatgtcacttctccagacattgattactcaggactctgctagt
atctcagaactccaggatgttgttgatgtgctatcaaagatttcaaggaggccaggttca
cctgagttgatgcaacaggtgaatgagattgcaaggaataatgccaacaatgctcctggt
tttgcttttgggaaggataaaaaggttttacctaaccgggcaaacaaagaggaaaacagt
gttagtgatgccactgtagctgattctgttggttttcaagaccaggttgcacacctattt
tctgagtggtgccaaatatgtgatcatccaaatgctagtgatgcggcctatagtcgtttt
gttatgcagttgcaacatattggcctgctgaagggagacgaattcacggagcgtttcttc
cgaattctcacggaacttgctgttgcacactctctagtctctgagcaaattaatgctcct
ggtggattgtctcagcagtcatcacatatatcatatttccccattgattcatattcgaag
cttgtgtctgtggtgataaagaattgttcagtggaaataggaccaaataaaggcagcctt
cttcccaagatattgtcagtgacaattagggtcattcagaaagatgctgaagagaagaaa
gcttcatttaacccccgaccatactttcggctatttatcaattggctgaatgaccttagt
aattctgaactccatcatgatggagctaatttccaggttttggctgcatttgcaaatgca
ttccatgtactgcaaccctcgagaattcctagcttgagctttgcttggcttgagttggtg
agtcatagaaccttcatggcaagactgctgacgggcaattcacaaaaagggtggcctttt
ttccaacggctacttattgatctgttcaaattcatggaaccatatttgagaactgccgac
ctattagaaccagtgcaccttatgtacaaaggaactatgagagtgctgctcgtactactc
catgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttcc
agttgcattcaaatgcgcaatgtcattctcagtgcttttccgcgcaacatgagacttcca
gacccatctacccctaatttgaagattgatctgctagctgaaatttcattacctccacga
atcatgtcagatgttgatggtgccctcaagtcaaagcatatgaaggctgaagtcgatgag
tatcttaagagaccagaaggctcatcctttttgaatgatctgaagcaaaagttgctgctg
cctcagaatgaagctaatgttgctgggacacgctacaatgtgcctctgatgaattcgctt
gttctctacattggcatccaagcggtgcaacaactgcaagcgaacaaggcaaatgcatct
gcgtcagcacagcagattaaccatagtacaatggatatttttcagatcgaaactgcgact
gaatttttcagatatcttgtaacgaacttggatacagaggggcgctacctgtttttgaat
gcgattgcaaaccaactgcgctacccgaatagccacacgcactacttctccttcatcatt
ctgtatctatttgctgaagctagccaggaacatatccaggagcaggtgacgagggttctc
ttagaacggctgatagtgaatcgtcctcacccctggggattactcatcaccttcatcgag
ctgataaagaacccgcgctacaacttttggaaccgagccttcacacactgcgcacccgag
attaagcagctgtttgagtcagtcgcaaagtcatgcggtggaggcgctggaaaagcagtg
gatgatggctctgatgtcagccactaa
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integrated database retrieval system
