Triticum dicoccoides (wild emmer wheat): 119338530
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Entry
119338530 CDS
T07278
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119338530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119338530
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
119338530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
TPR_16
TPR_8
TPR_11
TPR_19
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_7
BTAD
ARM_TT21_C
T7SS_EccA1_N
TPR_15
Motif
Other DBs
NCBI-GeneID:
119338530
NCBI-ProteinID:
XP_037466755
LinkDB
All DBs
Position
1B:complement(417360581..417369546)
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AA seq
1153 aa
AA seq
DB search
MSAPAAKQGAEEEAERLLAAAKLNPNDGGHFRSLGHHYARAGDAQRAARCYQRAVALDPD
DAEAGEALCDLLDAEGKESLELAVCKEAAGKSPRAFWAFRRLGYLQVHQKKWSDAIQSLQ
HSIRGYPTCADLWEALGLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYF
RKGVEQFRSAVEMAPHNHSAYFGLASALLAWSKHCVTIGAFTWAANLLKEASETAKVCTS
LTGNLSCVWKLHADTQLALARCSPWEDRHIKRGMDEQNFKASVLQWRNTCLSAANSAKLS
YQRALRLTPWEANIHIDTAICLDLICTMEENNSVDPIVWELPEKMSLGGLMLEPVNKDFW
VTLGSVSSNQALKQHSLIRALQLDTSLSEAWAYLGKIYRQSGHKQLARQAFDRARSIDPS
LALPWAGMSAENNHQSRAGAVNESYESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVL
MAVRQAVQRAPHYPESHNINGLVSEVRSDFQSAITSYQHAKFALDMVRGSKLDNRYPFVD
VSVNLARSLCKAGLATDAVCECEELKTQGLLNVDGLQVYALALWKLGRHDEALSISQNLA
ENLSNMKQESATGALGFICTLAYNIAGKDSAASVIHTLPGQPSYNRELKFIISALDALQP
SKRFQLPHLSTPPRLTSYDVMSEVHSNIALGKAFGGESNNCLGVEGGLSYLKKVLHMYPD
CSLVRNHLGSLLLSSGDWTASHKAVRVTPLSHGHTSNRGLRSPHQIQACATMSCYATCTS
YPKFSFPTCEDQYLSQYNGIRNLQRLVHQEPWNQDARYLLVLAIFQKAREEKYPKHICAT
LKRLVLQIMSSSSNSQEHKLILYEKYLLLLLSSEVSLQSDDYENGIAQVTDALTVAPPSV
DTFFAHLQLCRAYVVQGDLSNSRKEYMKCLQNRTNTEVGWVMLKQLESLCSVNRGSDEIE
INLKECIERNGSNPSKWPSLFNLACAQCFMRDEDFASAEKALAQACAEKDADSCILFLNG
AMHMEIARRYAAPQYITRAASSLRKAQQKSQAAVPIISLLLAQAEGSLGSKAKWEKNLRL
EWFSWPPELRPAELYFQMHLLASQSTAVATGPQQKKLQLLETMQSPGAWLLRAIHQNPSC
SRYWKALLQLVCV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccccgcggcgaagcagggcgcggaggaggaggccgagcgcctcctcgcggcc
gccaagctgaaccccaacgacggcgggcacttccgctccctcggccaccactacgcccgc
gccggcgacgcgcagcgcgcggccaggtgctaccagcgggccgtggccctcgaccccgac
gacgccgaggccggggaggcgctctgcgatttgcttgacgcggaggggaaggagagcctg
gagctcgccgtgtgcaaggaggctgccggcaagtcgccgcgcgcattttgggccttccgg
agactcggctacttgcaggttcatcaaaagaagtggtcagatgctatacagagccttcaa
cactcaatacgaggttacccaacatgtgcggatttatgggaggcacttggtctggcttac
caccgtttgggcatgtttactgctgcagtaaagtcatatgggcgagctattgaacttgat
agttccagggtctttgctttgattgaaagtggaaacatccagctaatgcttggctatttc
agaaagggagtcgaacagttccgttctgccgtggagatggctcctcataatcattctgca
tactttggacttgcctcggcattgcttgcgtggtcaaagcattgtgtaactattggggcc
tttacctgggcagctaatctgctgaaggaagcatcagaaactgctaaagtttgcacttcc
ttgactggaaacctttcctgtgtttggaaattgcatgcagatactcagctcgcacttgca
aggtgttctccgtgggaggataggcatattaagaggggcatggatgaacaaaatttcaaa
gcttccgtccttcagtggagaaatacatgtttgtcagctgcaaatagtgcaaaactctca
tatcaacgagctttgcgcctcactccttgggaagctaatattcacattgatactgctatt
tgtcttgatctcatttgtaccatggaggaaaataactctgtagaccccattgtttgggag
cttccagaaaaaatgtcattgggtggtttgatgctggaaccagttaataaggatttctgg
gttacattgggttcagtctcaagtaatcaggctttaaagcagcattctcttatcagggca
ctgcagttggatacgtctctctctgaagcttgggcataccttggaaagatttacagacaa
tcaggtcacaagcaattggccagacaagcatttgatcgagctcgaagcattgatccatca
ttggccttgccatgggctggaatgtcggcagaaaacaatcaccaatctagggctggtgca
gtaaatgagtcttatgaaagctgcttgagagctgtgcagatactacctctgccagagttc
cagattggccttggaacaattgcagctcgttctggtgaacttctgtcacctcaggtattg
atggctgtaagacaggctgttcagcgagcgcctcattacccagaatcacacaatataaat
ggcctggtctctgaagtgcgatcagattttcaatctgcaatcacgtcttaccaacatgcg
aaatttgctttagacatggtgcgcgggtccaagttagacaatagatatccttttgttgat
gtttcagtgaatcttgcccgatcactatgtaaggctggtcttgcaactgatgcagtgtgc
gagtgcgaagagttgaaaacacaaggactgctgaacgttgatggattgcaagtatatgct
cttgcactgtggaaacttggacggcatgatgaagctctttccatatcacaaaacttggct
gaaaacttatctaatatgaagcaggagagtgcaactggggcattgggattcatatgcacc
ttagcatacaacatagctgggaaggattctgcagcttcggtcattcatacactccctggt
caacccagttataacagagagttgaaattcatcatctctgcattagatgctttgcagcca
agcaagcgttttcagttacctcacttgagtacgcctcctagacttacatcctatgacgtg
atgagtgaagtccactcaaatattgctctggggaaggcatttggtggggaatcaaacaac
tgtttaggggtcgagggtggtttgtcttacctgaaaaaggttctacacatgtatcctgac
tgcagtttagtaagaaaccatcttggatctctgctgctgtcgagcggagattggactgct
tctcacaaagcagtaagggttactccgttgtcccatgggcacacatctaataggggtcta
aggtctccgcatcaaattcaagcttgtgcaacaatgtcttgctatgctacctgcacctct
tatccaaagttctcattcccaacatgtgaagaccagtacctaagtcaatacaatggaata
cgcaacctgcaaaggttggtccatcaagaaccatggaaccaagatgcacgctacttgctt
gtgcttgctattttccaaaaagcacgtgaagagaagtaccccaaacatatttgtgccact
ttgaagaggctggttttacaaattatgtccagcagtagcaattcacaagagcataaactc
atcctttacgagaagtacttgctacttcttttgtcttcagaggttagtttgcaatctgat
gactatgaaaacggcattgctcaagttacagatgctctaacagttgctcctccgagtgtg
gatactttctttgcacacttgcaactgtgtcgggcttatgtggtgcaaggcgatctttcg
aactccaggaaggaatacatgaaatgcttgcagaaccgcacgaatactgaggttggctgg
gtaatgctcaagcaacttgaatctttatgttcagtgaaccgtggctctgatgaaatagag
ataaatctgaaagaatgcattgaaaggaatggtagcaacccatcaaaatggccatctctt
tttaatctagcatgtgctcagtgttttatgcgggacgaggactttgcaagtgctgaaaaa
gctcttgcacaggcatgtgcggaaaaggatgctgatagctgcatcttattcctcaatgga
gctatgcatatggagattgcccggaggtatgcggctcctcagtatataacccgcgcagct
tcgagcctcagaaaggcacagcagaagtctcaagctgccgtacccatcatatcactccta
ctggcccaagcagaaggcagcctcggctccaaagccaagtgggagaagaaccttcgcctc
gagtggttctcttggcccccagaattgcggcctgctgagctctatttccaaatgcatctt
ctggcgagccagtcgactgcggtggcgacaggtcctcagcagaagaaactgcaactgctg
gaaacgatgcagagtcccggggcgtggcttctcagggcgatacaccagaacccgtcatgc
tcacggtactggaaggctttgctgcagcttgtgtgcgtgtag
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