Triplophysa dalaica: 130409030
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Entry
130409030 CDS
T09616
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130409030 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130409030 (pan2)
Enzymes [BR:
tdw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130409030 (pan2)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130409030 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
130409030 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
130409030
NCBI-ProteinID:
XP_056588596
LinkDB
All DBs
Position
20:complement(2338733..2351536)
Genome browser
AA seq
1205 aa
AA seq
DB search
MMNFEGLDPGLGEYAPGLHGSLEPGLDSSMDPRLDPALLQGVELDPEGLVVPESVHIVEG
MYSELHSVAAEVGIPVTATYFDLQEELLWMGNHRGHASSFFGPTMGRYSSFQVHLTDDIR
QIQSMDTGVLFLTKNNLKCLTRGGWIMFDYPTEEGADMHSLLLTDNNTLLMGGLQNYVTE
FDLTTVQETQKFTVEVPGVAIMRQSNRFFFCGHTSGKVSLRDPRTVKMEYEFDAFSGSLS
DFDVHGNLLAACGFSSRGLNGLSCDRFLMVFDLRMMRAITPLQVHVDPLFLRFIPTYTSR
LAIISQTGQCQFCEPTGLASLADLFHVNTVGQLLMSFDVSSSKQALSFGDSGGCVHLWSS
APEVSYNSYSRETELALPCLVDSLPQMDWNHELMPLSLIPMPLTSSEPLLSDWASNLISP
SPRRAPPVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKEIEVDYDNYNQVPESPSGR
DEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLYFL
EPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLILA
DSDEQTGKARLGRLIQSWNRFILAQLHQETLEQEGPQAYRGASSSGLGSSAESVIGRLFG
CEVENSSLCRCGKETVRSSMTLLFTMHYPEQSSLDKTIEEHDFADVLKKSICLEQSTQAW
CDNCEKYQPTVQTRNIRCLPDVLVINCEVNSSKEAEFWRAQTEYVFNNALKKEAAEPPKP
KEPLPTEWCLEEELCSVEGLTFDTQAEDMRHVWIPLSLKMCISKTQGLEVSSLSVGEELT
ESEEAEGASIYDLVVTVSHIQDPRTGGNLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIE
PIDKAESVQFDVNWKVPAVLYYVRRNYNAKYDLKIKNPIEPSVLLTEASLARKQRKSHAT
FIPLMMSEMPQASDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGAN
EGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGVRF
VGHGLQKDFRVINLMVPKDQVIDTVYLFHMPRKRMISLRFLAWYFLDLKIQSETHDSTED
ARTALQLYRKYLELSHNGRQDEFRKVLKALYEKGRKLDWKVPDLDSSDGQGSPKRTAVFP
SVMGL
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacttcgagggtctggacccgggcctgggcgaatacgcgcccggcctgcacggc
agcctggagcccggtcttgactcatctatggacccacggctcgacccggcccttcttcag
ggcgtagagctcgaccccgaggggcttgtcgtgcccgaatctgtgcacattgtggagggc
atgtactcggagcttcacagcgtggccgcggaagtcgggatccccgtgacagccacttac
tttgacctacaggaggagcttttgtggatggggaaccaccggggacacgcaagttctttt
tttggcccgacgatgggccgctactcctcttttcaggtgcacttgacggatgacattagg
caaatccaaagtatggacacaggggtgctgtttctgaccaagaacaacctgaaatgcctg
acgcgtggaggctggataatgtttgattatccgacggaggagggcgctgacatgcacagt
ttgcttctgactgataacaacactttattaatgggaggtctccagaattatgtgacggaa
tttgacctcaccacagtgcaggaaacccaaaaatttactgttgaggttcctggagtcgcc
atcatgagacagtccaatcgcttcttcttttgtggccacacctcaggcaaggtgtctcta
agggatccacgcacggttaaaatggagtacgagtttgacgctttctccggaagcctatct
gattttgacgtacatggcaacctactggcagcatgtggcttttccagtcgtggtctgaac
ggactgtcatgtgaccggtttttgatggtgtttgacctgcgtatgatgagggccatcacc
ccgctgcaggtccacgtggaccccctgttcctccgcttcatccccacatacacctcacgt
ctggctatcatttcacaaacaggtcagtgtcagttctgcgagcccactggactggccagt
ctggctgacctctttcacgtcaacacagtggggcagctgctgatgagcttcgacgtgtcc
tccagcaaacaggcgctctcttttggggactctggtggctgtgtgcatctgtggtcgagc
gctccagaggtgtcctataacagttactccagggagactgagttagccctgccctgcctg
gtggactcgctgccccaaatggactggaaccatgagctgatgccgctctctcttattcca
atgcctctcaccagttccgagcccttgctttcagactgggcctccaaccttatttctccc
agccccagacgagcccccccagtagatcctgaaattcttaggactatgaaaacagtgggc
tttattggatacgcccccaatcctagaacccgtcctagaaaccaggttccctataagatt
aaagagatagaggttgactatgacaactataatcaggttccggagtctcccagtggtcga
gatgaggagccacatctttacatggtgccgaagaagtaccgtaaggtgaccattaaatac
tccaaactgggactagaagactttgatttcaagcactataacaggactctgtttgctggt
ctggaacctcacatacccaacgcttactgtaactgcatgatccaggtgctgtatttcctg
gagccaatcaggtgcctggtacagaatcacctgtgtcagaaggagttctgtctggcctgt
gagctcggcttcctctttcacatgctggatctgagcagaggagacccctgccaggccagc
aattttctccgggctttccgaacaatcccagaggcatctgcgttgggtttgatcctggcg
gattctgatgaacagacagggaaagcccgtctgggtcgcctcatccagagctggaaccgt
ttcattcttgcgcagctgcatcaggagacactggagcaggaaggaccgcaggcatacaga
ggggcaagcagcagtgggctgggttcctctgctgagtctgtgattggacggttgttcggc
tgtgaagtggagaacagcagtttatgtcgctgtgggaaggagacggttcgctcatctatg
actctgctgtttaccatgcactacccggagcagagctctctcgataagacgatagaggaa
catgactttgcagatgttttgaagaagagtatctgtctggaacagagcacacaggcctgg
tgtgacaactgtgagaaataccagccaactgtgcagacccggaacattcgttgtctgcct
gatgttctggtgataaactgtgaagtcaacagctctaaggaggccgagttctggagagct
cagactgagtatgtgttcaacaatgctctaaagaaagaggcggccgaacctcccaaaccc
aaagagcctcttcctacagaatggtgtttggaggaggaactatgcagtgtggagggtttg
acctttgacacgcaagcggaggacatgaggcacgtctggatccctctcagtttgaagatg
tgcatcagtaagactcaaggcctggaggtcagcagcctatctgtgggagaggagctgacc
gagagtgaagaggcagagggggcgtctatctacgatttggtggtcaccgtgtctcatatt
caggatccacggactggaggaaacctagtggctcatatcaaagtgggagagacctaccac
cagagaaaagagggagtaacacaccagcagtggtatctattcaatgactttctgatcgag
cccatagacaaggctgaatcggttcagttcgatgtcaactggaaggtcccagctgtactt
tactatgtcaggaggaactacaacgccaagtacgatttgaaaattaagaatcccatcgag
cccagcgttttgctgacggaggcctcgttggcacggaaacagaggaagagtcacgctacc
tttatacctctcatgatgagcgagatgccacaggccagtgacctcgtgggactggacgca
gagtttgtcacgcttaaccaggaggaggcagaactacgcagcgatgggaccaagtctacc
attaaacccagtcagatgtctgtggcccgtatcacctgtgtgagaggtcaaggagccaac
gagggagtgccgttcattgatgactacatatctacacaggagcaggtggtagattacctg
acccaatactctggtattaaacccggagacctcgatgccaaaatctcttccaaacacttg
accactctgaaatcgacgtacctcaagctgcgatttcttattgacactggagttcgcttc
gttggtcacggtttacagaaggacttccgagtcattaacctgatggttcctaaagatcag
gtcatcgacactgtctacctcttccacatgcctaggaaaagaatgatctctttgcgtttc
ctggcgtggtattttcttgatctgaaaattcagagcgaaacccatgacagtactgaagat
gctcggaccgccctgcagctgtacaggaagtatttagagctgagtcacaatggaagacag
gacgagttcaggaaggttctcaaggctctctatgagaagggacgcaaactagactggaag
gttccagaccttgactcttcagatggtcaaggtagcccaaaaaggacagctgtgtttccc
tcggtgatgggtttataa
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