Triplophysa dalaica: 130414117
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Entry
130414117 CDS
T09616
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tdw
Triplophysa dalaica
Pathway
tdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130414117 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdw03019
]
130414117 (cnot1)
Messenger RNA biogenesis [BR:
tdw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130414117 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130414117 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130414117
NCBI-ProteinID:
XP_056595803
LinkDB
All DBs
Position
24:6771210..6788982
Genome browser
AA seq
2402 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSCGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISNPVGGGIWSDGKDKSDGSQVHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPELF
CFADYPCHAVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMEPLSAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSTSLTGIGSGLGMPAVSSDLFGARKMSTPGLNQTTFQQMFSSAQKEWPVTDPHPTVSAD
LSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVF
NCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGS
KMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKM
QGSITTPGSLALAQAQAQSQTPKAPQPGQPSTLVTTATTTTTAAKTTTITRPTPVGLKKD
VPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEE
FMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAAN
FSDRSLLKNLGHWLGIITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLES
SLRSVIFRPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRD
KEKLKTLEEQLSAPKKETKPPEEMLPTTVDPVAFTTVPSTPTTTTTCTATGPPTPQFSYH
DINVYALAGLAPHININVTVPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTC
EQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAP
TPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRY
CDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMK
QQAWPTDDVAHIYDKCISDLEQHLHAIPPALAMNPQTLAIRSLLEAVVMARNSRDGIAAL
GLLQKAVEGLLDATSGADPDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRD
EYKYNVEAVELLIRNHLVNMQQYDIHLAQSMENGLNYMAVAFAMQLVKLLLVDERSGSHI
TEADLFQTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQA
SEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF
RLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC
NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR
NVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM
RLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNL
QDHVVPQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTG
AS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagttacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacacattgtgaatcgtcacggc
cctgaggcagacaggcatctattacgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacagtttctgatccaggagtgtgtgtcg
cttattaccaaaccaaattttatttcaaccctctgctacgccattgacaatcccctacac
tatcaaaagagcttaaagccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtaatttttggccttgctctgctaaactctagcaacgcagac
cttcgagggtttgcagcccagtttgtgaagcagaagcttcctgacctcctccgttcgtac
gtggacgccgacctcggaggaaatcaggaaggtggcttccaagacattgccatagaggtt
ctgcatctgctcctctcccatcttttgttcggccaaaagggctcctgcggagttggacaa
gagcagatcgacgcctttctcaaaacactgtgcagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctctaccctgacaaacgggacattctcatggacaggatcttg
ccagactctggagagttaaataagaccatgatggagagttccctcgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagaatgtaggaacataatcctgcagtat
ggagttcgagaggtgacggccagccaggttgccagagtgctgggcatgatggcccgcaca
cactctggcctgtccgatggcatccctttacagtccatctcaaatccagtgggtggtggc
atttggagtgatgggaaggacaagagtgatggctctcaggttcacacctggaacgttgaa
gttctgattgacgtggttaaagaagtgaaccccaatctgaatttcaaagaggtaacctat
gagctagaccacccaggcttcctgatccgggatagtaaggggcttcagatagtggtgtat
gggatccagaggggtctgggcatggaggttttcccagtggatctcatttacagaccatgg
aagcatgcagaaggacagctgtcattcattcagcattctttgatgagtcctgaacttttc
tgctttgctgattacccgtgtcacgctgtcgccattgatatcctgaaagccccacctgag
gacgacaacagggagatagccacatggaagagtttggacctggtggagagcctcttgcgt
ctctctgaagttgggcattacgaacaggtgaaacagctcttcagcttccccatcaagcac
tgcccggacatgctggtcttggccctgctgcagatcagcacgtcctggcacacgctgcgt
catgagctcatctcaaccctcatgcccatcttcctgggcaaccaccccaactccgctatc
atcttgcactatgcctggcatggacagggtcagtccccatccatccgtcaactgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggctaagctgtctcgc
atcttggatgtggctcaggacttgaagtctttatcgatgctgctgaatggtactccattt
gcctttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaactcgacaaa
tggcttactgacaaaatccgagagcacggggagccgtttatccaggcgtgcgtcacgttc
ctgaagaggcgctgtccttccatcatgggtggtttggccccagagaaagaccagccgaaa
agtgcacagcttcctcctgaaacactggccaccatgcttgcgtgtctgcagtcttgcgct
gggagtgtatctcaagagctgtcagagactatattgaccatggttgccaactgtagcaat
gtgatgaacaaagctcgacagccgccaccaggggtcctaccgaaggggcgagcacccagc
accagcagcttagacgctatctcacctgtgcagatggaacctctctctgctatgggctct
ctgagtttaggtgtttcatccacctctcacaccccaagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccggctaaggctttctcaaacctgcccaac
ccaaaccccagcacagctttcccaggaattaaccccctatcatctcagctacaaggtcct
ttaagcacaagcttgactgggatcggatcaggcttgggcatgccagccgtcagcagcgac
ctcttcggcgccaggaagatgagcacaccggggctgaaccagaccaccttccaacagatg
ttttcatcagctcaaaaagaatggcctgtaacagatccccatcccactgtttcagctgac
ctatctcaggtgtggccagaggcaaatcagcactttagtaaggagattgacgacgaagca
aatagctacttccaacgtatctacaaccatccaccacatccaactatgtctgtggatgag
gtgctggaaatgctgcagaggttcaaggactccaacatcaagcgggaacgagaggtgttt
aactgcatgctgaggaatctgttcgaggaatacagatttttcccccagtatcccgacaaa
gagctgcacatcaccgcctgcctcttcgggggaatcatcgagaagggcctagtcacgtac
atggcactgggcttggccttaagatatgtcttggaagccttacgcaaaccttttggatca
aagatgtattattttggaattgctgcactagatagatttaaaaatagattgaaggactat
ccccagtactgtcagcacttggcgtctatagcccatttcctgcagtttccgcaccattta
caagagtgtgtacagtatatcgagtatggccagcagtcaagagaccctcctgtgaagatg
caagggtccatcaccaccccgggcagcctggcactagcccaagctcaggcccagtctcag
acgcccaaagccccccaacctggccaacccagcaccctggtgaccacagctaccacgacc
accaccgctgccaaaaccaccaccatcacgagacccacacctgtcggactgaagaaagac
gtgccaccctcaatcaacaccacaaacatcgacaccttgttggtagccacagaccagact
gaaaggatcgttgagcccccagagaacgttcaggagaagattgcgttcatcttcaacaac
ttgtcccagtcaaacatgtcccaaaaggtggaggaactgaaagagactgtgaaggaagag
ttcatgccctgggtttctcaatacctggtcatgaagcgcgtcagtattgagcccaacttc
catagcctgtattctaactttctggatacactgaaaaacccggagtttgtcaagatggtt
ctcaatgagacttacagaaacatcaaggtccttcttacctctgataaggcagctgctaac
ttttctgatcgatccctgctgaagaatttgggtcattggcttggaattatcaccctggct
aaaaacaaacccattttgtacactgacctggagctgaaatcccttctgttggaagcctat
gtgaaaggtcagcaggagttgctgtatgtagtcccatttgtggccaaagtcttggaatca
agtctacggagtgtgatcttcagaccgcaaaacccttggaccatgggtatcatgaatgta
ctagctgaactccaccaggaacatgacttaaagctcaacctgaagtttgagatcgaagtg
ctctgtaagaatctgtctctggacatcagcgagctgaagccaggaaacctgctgagagac
aaagagaagctcaagaccctggaggagcagctctctgcaccaaagaaagagaccaagcct
cctgaagagatgctgcctactacagttgatcctgttgcgttcacaacagtcccctcaact
ccaaccaccaccactacttgtacagccacagggccgcccactccacagttcagctaccat
gacattaatgtctatgccttggcgggcttggccccacacatcaatatcaatgtcactgtc
ccactgctgcaggcccaccctcaactgaagcaatgcgtgagaccggctattgagcgtgcc
gtacaggagctggtgcaccccgtggttgaccggtccatcaagatcgccatgaccacctgc
gagcagatcgtcaggaaggacttcgccctggattccgaggagtctcacatgcgcgtggct
gcccaccacatgatgcgaaacctcaccgccggcatggccatgatcacctgcagggagccg
ctgctcatgagcatcgccaccaatctgaagaacagttttgctgcagctcttagggctccc
acgccccagcagagagagatgatggaagaggctgctgctcgtgtcgcgcaggacaactgt
gagctggcgtgttgcttcattcagaagaccgcagtggagaaagctggaccagagatggac
aagagactggcaactgagtttgagctgaggaagcatgcccgccaagaaggccgtcgttac
tgtgaccccatggtgctcacctatcaggccgagcgcatgccagagcagatcagactgaag
gtgggtggagtggaccctaaacagctggctgtttatgaggagtttgcgcgaaacgttcca
ggcttcctccctagtaatgacctgtctcaacctactggattccttgctcaaccaatgaag
caacaggcatggccgaccgatgatgtggctcacatctatgacaagtgcatttcagacttg
gagcagcacctccatgcaattccacccgcccttgccatgaacccacagacccttgccata
cgaagcctgttggaagctgtagttatggcaaggaactcccgtgacggcattgctgccctg
ggccttctgcagaaggctgtagagggtttgctggatgccaccagtggtgctgatcctgat
ctgttgctaagctacagagagtgccacctactggtgcttaaagccctacaggatggacgt
gcctacggcccacaatggtgcaacaaacaaatcaccagatgcctgatcgaatgccgagat
gaatacaaatacaacgtcgaagctgtggagctgctcatcagaaaccatctggtcaacatg
cagcagtatgatatacatctggctcagtcaatggagaacggtctcaactacatggccgta
gcatttgccatgcagctggtgaaactcctgctggtcgatgagcgcagcgggagccacatc
actgaagccgacctcttccaaaccatcgagacgttgatgaggaccagcgcccattccaga
gcaaatgcacctgaaggtttgccccagttgatggatgtggttcgctccaactatgaggct
atgatcgatcgccaccacggtgggcccaacttcatgatgcattctgggatttctcaagca
tctgaatatgatgacccaccaggcctcagagagaaggcagagtacctgctgagagaatgg
gtcaacctgtaccactcggcggctgccggcagggacagcactaaggctttttctgcattt
gttggccagatgcaccagcaaggcatcctgaaaaccgatgacctcatcactcgctttttt
cggctctgcacagagatgtgcgttgagatcagttatcgagcacaagccgaacagcagcac
cccaccaccagccccgccatcatcagggcaaagtgctaccacaacctggacgccttcgtt
cgtctcatcgccctgctggtcaaacactccggagaggccaccaacacggtcaccaaaatc
aacctgctcaacaaagttctgggcattgttgtgggcgtgttgattcaggatcatgatgtg
aggcagacggagttccagcagctcccgtaccaccgaattttcatcatgcttttgttggaa
ctcaatgcaccagagcacgtgctggagaccatcaacttccagaccctcactgccttctgt
aacacatttcacatcctgaggccgactaaagctcccggatttgtatatgcttggttggag
cttatttctcatcgcatcttcattgccaggatgctcgcacacaccccacaacagaagggt
tggcctatgtatgcacagctgctgattgacttgttcaagtatcttgcacccttcctaagg
aatgttgagctcaacaaacctatgcaaattctttacaagggaacgctccgtgtgctgctc
gtcttgctccatgacttcccagaattcctttgcgactaccattatggcttctgtgacgtc
atcccgccaaactgcatccagctgaggaaccttatcctgagtgccttcccccgcaacatg
aggcttccagaccccttcaccccgaatctgaaggtggatatgctaagcgagatcaacatc
gctccccgcattctcactaacttcaccggtgtgatgccatcgcagttcaaaaaggatctt
gactcttatctgaagacccgctcacctgtgaccttcctctctgagctccgcagcaacctg
caggatcatgttgtacctcaggtgtccaacgagccaggcaaccgctacaacatccagctg
atcaacgctctggtgctgtacgtgggtacccaggccatcgcacacattcacaacaagggc
agcactccctcaatgagcaccattactcattcagcacacatggacatcttccagaacctc
gcggtagacctggatactgagggccgctacctgttcctgaatgcgatagccaatcagctg
cgttacccaaacagccacacacactactttagctgtaccatgctgtatctgttcgccgag
gccaatgctgaagccattcaagagcagatcaccagggtccttctagagaggctgatcgtg
aacaggccgcacccttggggtctgctcatcaccttcatcgagctgatcaagaaccccgcc
tttaagttctggagtcacgactttgtgcactgtgcccctgaaatcgagaaattgttccag
tcggtggctcagtgctgcatggggcagaaacaggcccagcaggtgatggagggaacgggt
gccagctaa
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integrated database retrieval system
