Triplophysa dalaica: 130425080
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Entry
130425080 CDS
T09616
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tdw
Triplophysa dalaica
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tdw04040
]
130425080 (scn1lab)
Ion channels [BR:
tdw04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130425080 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Spem1
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
130425080
NCBI-ProteinID:
XP_056607112
LinkDB
All DBs
Position
6:1249946..1282914
Genome browser
AA seq
1996 aa
AA seq
DB search
MAAQLLVPSGPDSFRPFLPESLAAIEHRIAEEAAQRPKGERRTNDDDENGPKPNSDLEAG
KSLPFIYGDVPSEFVSVPLEDLDTYYSNQKTFIVLNRGKTIFRFNATPAVYILSPFNPLR
RISIKILVHAMFSFVIMCTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRRPGGNVTENTTALLNFSSE
LHNYTFNWTVYISDSNNYYYLPGRRDALLCGNSSDAGQCPEGYDCIKAGRNPDYGYTSFD
SFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNLILAVVAMAY
DEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAVAAATESGEYSGRGVLSEESSSGGS
RVSSKSAKERRNRRKKRKQREEEEKADQEKFHKSASEDSIRRPGFRFSMDANRLSYEKKC
STPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTFEDSDSRRGSLF
VPRCMERRSSVVSHCSLAPRIMLPANGKMHCTVDCNGVVSLVGGTSVPTSPIGRLLPEGT
TTESEARKKRSGSHQLSDYLDETVARKRAMSVASILTNTMEELEESRQKCPPCWYKFANS
VLIWDCNPKWLKVKEIVNMIVMDPFIDLAITICIVLNTLFMAMEHYPMTKEFNDVLSAGN
LVFTGIFTAEMCLKLIALDPYYYFQQGWNIFDGIIVSLSLMELGLANVEGLSVLRSFRLL
RVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYRECVCKIS
KDCVLPRWHMDDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIGNLVVL
NLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIHKGIALIKSALRHFLQHLCLSAAKP
GALNEEKPLDDLHVDTKENCLSNHAPVVVDLTKDYLKGVSPGNGVDGHVKYGMEEGDYMS
FIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEKLPIDTVLSSSEGSTVDIRP
PGEGAESVELEPEESMDPEACFTGGCVMRFQCCQVNVEKGNWKTWWNLRKTCFIIVEHNW
FESFIIFMILLSSGALAFEDIYIEQRKTVKTVLEFADKVFTYIFILEMLLKWVAYGFVKY
FTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSLRTLRALRPLRALSRFEGMRVVVNA
LLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCINITSDEMFPIDVVNNKSDCMAL
IANNESAHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEQQPEYEKNLYM
YLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKP
QKPIPRPANKFQGLVFDFITKQAFDIVIMILICLNMVTMMVETDDQTKEMDEILYWINLV
FIILFTGECILKMISLRQYYFTIGWNVFDFVVVILSIVGMFLSDIIEKYFVSPTLFRVIR
LARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREA
GIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKQAPECDSETEHPGSIYRGDCGNP
SVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPNA
TQFVEYHKLSDFADVLDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDILFAFTLRVLGEE
GEMDALRGQMEDRFMASNPSKVSYEPITTTLRRKHEEMSVIIIQRAFRRYRIRQTVKKAV
EAYRQRLKDGVAAIPEKEVLVIGKFHENSTSDKTDMTPSSASPPSYNSVAKSEKDKYEKE
RREKEDKANDARDRKK
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcagcttctcgttccatccggacccgacagcttccggcccttcctgcccgag
tctctcgctgctatcgagcatcgcatcgcagaggaggcagcccaacggcccaaaggcgag
agacggaccaatgatgatgacgaaaacgggcccaaacccaacagcgatctggaggcgggc
aagtccctgccctttatctacggagacgttccctccgagtttgtgtccgtcccgctggag
gacctggacacttactacagcaaccaaaaaacctttatagtattgaatcgcgggaaaaca
atattccgctttaacgctacgccggctgtgtacattttgagccccttcaatcctttgagg
agaatctctatcaagatcctggtgcatgcgatgttcagttttgtgatcatgtgcacaatc
ttgaccaactgcgccttcatgaccctcagcaatcccccagaatgggccaagaatgtggag
tacacattcacagggatctacaccttcgagtctctcattaagatcctggcgcggggcttc
tgcgtggggaagttcactttcctgcgggacccctggaactggctggatttcagcgtcatc
ctgatggcatatgtaacagaatttgtggatctgggcaatgtctcagcactgagaaccttc
agggttttacgagcgctcaaaactatatccgtgattccagggctgaagaccatcgttggc
gctctgatccagtcggtgaagaagctgtcagacgtgatgatcctgacggtcttctgtctg
agcgtgtttgctctgatcggactgcagctcttcatgggaaacttgaggcaaaagtgcgtc
agaaggccagggggcaatgtcacggaaaacaccacagcgttattaaacttcagctcagag
ctgcataactacaccttcaactggacggtttacatcagcgatagcaacaattattattac
ctccccggccgcagagatgctttgctgtgtggtaattcaagcgatgcaggacagtgtcca
gagggctacgattgtataaaagctggtcgtaatcctgactatggctacacaagcttcgat
tcgttcagctgggcctttctttcactcttcagactcatgacacaagacttctgggaaaat
ctctaccagcagaccctacgtgcagctggaaagccctacatggtgttttttgtgctggtt
atcttcctgggctctttctatctggtgaatctcattctggctgtggtggccatggcgtac
gatgagcaaaaccaggccactatagaggaggcccagcagaaggaggaggagtttcaagcc
atgttagaacagttaaagagacaacaggaggaggcacaggttgccgtggcagcagcaaca
gagagtggggagtacagcgggaggggggttctgtcggaggagagctcctccggtgggtcc
agagtcagctccaagagcgcaaaagagcgacggaaccgaaggaagaagagaaaacagaga
gaggaggaagagaaagccgaccaggagaagtttcataagtctgcgtcagaggacagcatc
agacggcccggctttcgcttctctatggatgctaaccggctctcctatgagaagaaatgc
tcaactccaaaccagtcgctcctcagcatccgcggttctcttttctccccgaggagaaac
agccgtgcgagtctgttcagtttccgcggccgggcgcgagacttcggctcggagaacgat
ttcgcagatgacgagcacagcaccttcgaggacagcgacagtcgacgcggatcgctcttt
gtacctcgatgcatggagaggcggagctccgttgtcagtcactgcagcctcgccccccgg
atcatgctgccggccaatggaaagatgcactgtaccgtcgactgcaacggcgtggtgtct
ctggtgggtggcacgtctgtgccaacatcaccgatcggccgcttgttaccagagggcacg
accacagagtctgaagctcgtaagaaacgttcaggatcacaccagctgtcggattatcta
gatgaaactgtcgccagaaagagagctatgagcgtggccagcattctgaccaacactatg
gaagagctggaggagtcgagacagaagtgtcctccctgctggtataagtttgcgaacagt
gttttgatctgggactgcaatccgaagtggcttaaggtgaaggagattgtcaatatgatc
gtgatggatccattcatagacctggccataaccatctgtattgtcctcaacactctcttc
atggcgatggagcattatcccatgacaaaagagttcaatgatgtcctgtctgcgggaaac
ttggtgttcactgggatcttcacagctgagatgtgtctgaagctgatagctctcgacccg
tattattacttccagcagggctggaacatctttgacggtatcatcgtgagtctgagtctc
atggagttgggcctggccaacgtggagggactttctgtgttgcgttcttttagattgtta
cgagtctttaaattagcaaagtcgtggcccactcttaacatgctgataaagatcatcggt
aactcagtcggtgctttggggaacctgaccctcgtcctggccatcatcgtcttcatcttc
gctgtggtggggatgcagctgtttggaaagagctaccgtgaatgcgtctgtaagatctcg
aaggactgcgtgctgccgcgctggcacatggacgacttctttcactccttcctgatcgtg
ttccgggtgctatgcggcgaatggatcgagactatgtgggactgtatggaagtggctgga
cagtccatgtgtctcattgttttcatgatggtcatggtcattggaaatctggtggtgttg
aacctcttcctggccttgctcctgagctctttcagcgccgacaatctggcggccacggac
gatgacagcgaaatgaacaacctgcagatcgccgtgggcagaatacacaaaggcatcgcg
ctgatcaaatccgctctccggcacttcctccagcatctctgcctatctgccgccaaacct
ggcgccttgaatgaggagaagcccctggacgacctccacgtcgacaccaaagagaactgc
ctctccaaccacgctccggtggtcgtcgacctcaccaaagactatctgaagggagtctcc
cccggcaacggggtggacggtcacgtgaagtatggaatggaggaaggcgactacatgtcg
ttcatacacaatcccagcctgacagttaccgtgcccatagcagtgggagagtctgacttt
gagaatctcaacacggaagatttcagcagcgattcgtcggacgtggagggcagtaaagag
aagctgccgatcgacaccgttctcagttcctcagaaggaagcacagttgatatccggcct
cccggagagggggcggagtctgtcgagttggagccggaggagtccatggaccctgaggcc
tgttttaccggaggctgcgtgatgagatttcagtgctgtcaggtgaatgtagagaaggga
aactggaaaacttggtggaacctgaggaaaacctgcttcatcattgtggagcacaactgg
tttgagtccttcatcatcttcatgattttactcagcagtggagccctggcctttgaggac
atttacatcgagcagcgcaagacggtcaagacggtgttggagttcgccgataaagtcttc
acgtacatctttattttggagatgcttctaaagtgggtcgcgtacggcttcgtcaaatat
ttcaccaacgcctggtgctggctggactttctgatcgttgatgtgtcgctggtgagtctg
gtagcgaatgctcttggttactctgaactaactgccattaagtccctgagaacactacgt
gctcttagacctctgagagctttatcacgcttcgagggaatgagggttgtggtgaacgct
ctgctgggagccattccttccatcatgaacgtgctgctggtgtgtctgatcttctggttg
atcttcagcatcatgggggtgaatcttttcgctgggaaatactaccactgcatcaatatt
accagtgatgagatgtttcccatcgacgtggtcaacaacaaatccgactgcatggccctg
atcgcaaacaatgaatcagcacactggaaaaacgtgaagattaatttcgataatgtggga
gccggatacctggcactactgcaagtggccacgtttaaaggatggatggacattatgtat
gcggccgtggactctcgcaatttggagcaacagccggaatatgaaaaaaacctttacatg
tacctgtacttcgtcatctttatcatcttcggctctttcttcactctcaatctcttcatt
ggtgtcatcatcgataactttaaccagcagaagaagaagcttggaggtcaggacatcttc
atgacagaagagcagaagaaatattacaatgccatgaagaagcttggatcaaagaagccc
cagaagcccattcccagacctgcgaacaagtttcaaggtctggtctttgacttcatcacc
aaacaagccttcgacattgtcatcatgatcctgatctgcttgaacatggtgaccatgatg
gtggaaacagatgaccaaacgaaggagatggatgaaatcttgtactggataaacttggtt
ttcatcatcctcttcactggagaatgcattctcaagatgatctccctgcggcagtactac
ttcaccatcggctggaacgtcttcgattttgttgtggtgattctgtcaattgttggcatg
ttcctctccgacattatcgagaaatactttgtatcgccaacgttattccgagtcattcgg
ctggccagaatcggacgcattcttcgtctcatcaaaggagccaaaggcattcgtactctt
ctgtttgccttgatgatgtcacttcctgccttgttcaacattggccttctcctcttcctg
gtcatgtttatctatgccatcttcggaatgtctaacttcgcctacgtgaagcgggaggcg
gggatcgacgacatgtttaacttcgagaccttcgggaactctatgctctgcttgttccag
atcaccacctccgcgggatgggacggtctcctggcacccattctgaacaaacaggctccc
gaatgcgacagtgaaacagagcacccgggcagcatttaccgcggcgactgtggtaaccct
tcggtcggcatcttcttcttcgtgagctacatcataatctgcttcttgatcgtggtgaac
atgtacatcgcagtgatcctggagaacttcagtgtggccaccgaggagagcgccgagccg
ctcagcgaggacgactttgagatgttctatgaagtctgggagcgcttcgaccccaacgcc
acgcagttcgtggagtaccacaagctgtccgacttcgcagacgttctggaccctcccttg
cgcatcccgaaacccaacaagatccagctgatagccatggacctgcccatggtgagcggc
gatcgaatccactgcctggacatcctgtttgccttcacgctgagggtcctgggcgaggag
ggtgagatggatgccctgagaggacagatggaggatcgattcatggcctccaatccgtcg
aaagtctcttacgagcccatcaccacgacccttcggcgcaaacacgaggagatgtctgtc
atcatcatacagagggccttccgacgctaccgcataaggcagactgtaaagaaggccgtg
gaagcgtatcgccaacggctgaaggacggagtagcggccatcccggagaaggaggtgctc
gtcatcggaaagtttcacgagaactcgacgtcagacaaaacggacatgactccgtcctcc
gcctctccgccatcctacaacagcgtggccaaatcggaaaaggacaaatatgaaaaggaa
aggagagagaaagaggacaaagcaaatgacgcgagggacagaaaaaaatga
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