Triplophysa dalaica: 130438264
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Entry
130438264 CDS
T09616
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tdw
Triplophysa dalaica
Pathway
tdw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130438264 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdw03021
]
130438264 (polr1a)
Enzymes [BR:
tdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130438264 (polr1a)
Transcription machinery [BR:
tdw03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
130438264 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
HMG_box
Nop14
UPF0128
Motif
Other DBs
NCBI-GeneID:
130438264
NCBI-ProteinID:
XP_056626087
LinkDB
All DBs
Position
16:20583449..20597689
Genome browser
AA seq
1702 aa
AA seq
DB search
MLFSKETPWRRLEGMTFGMLSYEEIRKLSVKTITNSLLLDNVGNAASNGLYDLALGPADN
KEICSTCMQDFKSCPGHFGHIDLPLPVYNPLFFDKLFLLIRGSCLSCHMLTCPRAAVHLL
LCQLKLLNVGALKDVYDVENALNQFVDANPRASGVEIQVALEEFITPILKANGDNRQADP
MKHVCEKRVSLINNFWKIHMGSKKCPHCRSNRTPLRREHNSKLIVTQSHSKADQELDDED
VPMAKQGYLTPSLAQEHVIKLWEKEGFFLKHLFPGFDTSGSEKRFAEVFFLELVVVPPSR
FRPINRLGDQMFTNGHTVNMQAVLKDNFIIQKLLALIAAEKTKDIEDTELEQSDETTEIS
QVDQSFLLDIQGQTLTDKLYNVWIRLQTHVNIVFDSEMDKMMMEKYPGVRQVLEKKEGLF
RKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTSWNVKELRQAVLNGP
NVHPGASMVINEDGSRTILNSTNLTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLL
LNRQPTLHRPSIQAHCARILPGEKVLRLHYSNCKAYNADFDGDEMNAHFPQSELGRAEAY
TLVSTDQQYLVPKDGKPLAGLIQDHMVSGSSMTLRGCFFTRDQYTALVYRGLTDKVGRVK
LLTPALIKPVTLWTGKQVVSTLLLNVIPENSIPLNLAGKAKIPSKAWVKEPPRPVPGYNP
DLMCESQVIIRQGELLLGVLDKAHYGSSSYGLVHCCYELYGGGTSGKLLSCLARLFTAYL
QLYRGFTLGVEDILVKKRANKQRRKIIKESVTCGSKALRAAFNLPESAPVDEARERWQDA
HLNTDQRDFNMVDLKFKEEVNQVNNNINKVCMPAGLHRSFPENNLQLMVQSGAKGSTVNT
MQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPQPRSGGFVTGRFLTGIKPPEFFYHCM
AGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDVPKT
QFLQPRQFSFIKDNYEVIRKSKCLDEVLAKMDPQTSNNHFNAIKKWKSKREHVSPRDGAF
LLYSQKKLAKLKAKSMSQELSNGRDEATLQLSEQWRNLDESNRMKYLKKSFGCPDPCLAV
HRPDICFGSVSETFDNIVESFLNQYSVKQEFQTSSDFIDSERLKVLLQLKWQRALCDPGE
AVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMSIPVL
MNKKAIKRVKALRKKLARVCLAEVLHKVDVTETLRMEGGKGKKSRVFKLAFHFLPPERYQ
QDKQLTPQQILHFMEQRFFRLLLEAIKKLNAKLASLSALDTRRATPGIDDREVAATTKGR
EDAEGEDSDEDRIVDDEANEGDTDATDARMKAKRDEEVDYEGEDGEDEGNDEEHADDEQA
DDRQEEAESSELPNEGSSESTPQSQRNGASKQLNIDSQDEEMRINSVLRFSDVIEDYKYD
SEHGLWCELTMVLPVSKVHVDLTSVVVKQARNAVVMETKGIARCLLNEVTTKQGNKELML
NTEGINMQELFKYTDILDLNRLYSNEIHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDP
RHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLTSPSA
CLVVGKVVKGGTGIFDLKQPLQ
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttctaaggaaacaccatggaggcgattagagggcatgacgtttggcatgttg
tcctatgaagaaataaggaaactgagtgtgaaaaccatcaccaattccctgcttttggat
aatgtgggcaatgcggcatcaaacgggttgtatgatctggctctgggtccggctgacaac
aaagagatctgctccacctgcatgcaggactttaagagctgtcctggacactttggacac
atagatctgcccctgcccgtctacaaccctctgttctttgataaattgtttttgctcatc
cggggttcgtgcctgtcatgccatatgttgacgtgtccgcgggcagccgttcatttactg
ctgtgccagctgaagcttctgaatgtgggagctttgaaggatgtttatgatgtcgagaac
gccctcaatcagttcgtggatgccaaccctcgggcgtctggagtagaaatccaagtagcc
ttggaggagtttattactcccatcctcaaagccaatggagataatcggcaagctgacccg
atgaaacatgtctgtgaaaaaagagtctctctcataaacaatttctggaaaatacacatg
ggttcaaaaaaatgtccccactgcagatccaatcgaacgccgttgcgcagggaacacaac
agtaaactgatcgtcacacagtcacattccaaagcagaccaagaattagacgatgaggac
gtgccgatggccaaacaaggatacctgactccaagcttggctcaagagcatgttatcaaa
ctctgggagaaagaaggttttttcctcaagcatctgttcccagggtttgacacgagcggc
tcagagaaacgcttcgctgaagttttcttcttagaactggtggtcgtccctccatccagg
ttcaggcctataaatcggttgggagatcagatgttcaccaacggtcatactgtgaacatg
caggcagtgttaaaggacaatttcatcattcagaagttgctggcgctcatcgctgctgag
aagaccaaagatatcgaagacacagagctggagcagtccgatgaaactacggagatcagt
caggtagatcagtcctttctattggacatccagggacagactcttacagacaagctttac
aacgtctggatccgtctacagactcatgtcaacattgtgttcgacagcgaaatggacaaa
atgatgatggagaagtatcctggagtgcgtcaggtcttggagaagaaagaaggtttgttt
aggaagcacatgatggggaagcgtgtggattacgccgctcgctccgtcatttgtcccgac
atgtacatcggaaccaatgagattggaataccaatggtgtttgccacaaagttgacgtac
ccgcagccagtgacgtcatggaatgtgaaggaactgagacaggctgtgctgaacggaccc
aacgttcaccccggagcctccatggtcatcaatgaggatgggtcccgaacgatactcaac
agtaccaacctgacccagagagaagccgtagccaaacagctcctgacccccagcactggc
caacacaggatccccatgaagatcgttaatcgacacataaagaacggcgacgtgcttttg
ttgaaccgtcagcccactctccacagaccgtctattcaggcccactgcgctcgcatcctg
ccgggagagaaagtgctgcgcttgcattactccaactgtaaagcctacaatgccgacttt
gatggagacgagatgaacgctcactttcctcagagtgaactgggaagagctgaagcttac
acactagtgagcacagaccagcagtatttagtgcctaaagatgggaagccgttggctgga
ctgattcaggatcacatggtgtctggcagcagcatgactctccggggctgtttcttcacg
cgggatcagtatacagcattggtctacagagggctgacagacaaggtcggcagagtgaag
ctcctcaccccagcgcttattaaacctgtgaccctctggacgggcaaacaggttgtgtcc
acgcttttgctgaatgtcattcctgaaaacagcatccctttgaacctggcgggaaaggca
aagattcctagtaaagcctgggtgaaggaaccacccagaccagttccaggatacaatcca
gaccttatgtgtgaatctcaggtgatcattcggcagggtgaacttctgctgggtgttttg
gataaagctcattacggcagctcttcttacggtctggttcactgctgctatgagctgtac
ggaggaggaaccagcgggaaactgctcagctgtctggctcgcctcttcaccgcatacctg
cagctgtaccgcggcttcacgctgggggtggaggacattctggtcaaaaagagagccaac
aaacaaagaaggaaaatcattaaagagtcagtcacatgtggctccaaggctctgcgggcg
gcgtttaacctgcctgagtctgcgcctgtggatgaagccagagaacgctggcaagacgct
catctgaacacagaccagagagatttcaacatggtggacctgaagttcaaagaggaggtc
aatcaagtcaacaacaacatcaacaaggtgtgcatgccagcgggtctccaccgctctttc
ccggagaataacctgcagctcatggtgcagtcaggagcaaagggttccactgttaacacc
atgcagatctcctgtttgctgggtcagatcgagctggagggccgccggccgccgctaatg
ccttctgggaaatccctgccctgctttcagccctacgatcctcagccgcgctcgggcgga
ttcgtcactggcagattcttgacgggcatcaaacctcctgagtttttttatcattgtatg
gctggtcgtgaaggtctcgtggacacggctgtcaaaaccagtcgatcaggttatcttcag
aggtgtgttatcaagcatctagagggtctggtggtccagtacgatctgacggtgagagac
agtgatggaagtgtggtccagtttctctacggagaggacggactggatgttcccaagact
cagttcttacagccgcgtcagttcagtttcatcaaagacaactatgaggtcatcagaaaa
tccaagtgtttggatgaagttttggctaagatggacccacagacttccaacaatcatttt
aatgccataaagaaatggaaatccaaacgtgagcatgtttcaccccgagacggggcgttc
ctgctttactcgcagaagaaactggccaagttaaaagctaaatcaatgagccaagaactg
agcaatggaagagacgaagccactctacagctttcggagcagtggaggaatctggatgag
tccaaccgaatgaagtatttgaagaagagctttggttgtccagacccgtgtttggctgtt
caccggccggacatctgcttcggttcagtatctgagacgtttgacaacattgttgagtcc
tttctgaatcagtacagtgtgaagcaagaatttcaaacgtcatctgacttcattgactca
gagcgactgaaggttctgctgcagctcaagtggcagagagctctgtgtgatccaggtgaa
gctgtaggtctgctggcggctcagagcatcggagagccctccacacaaatgaccctcaac
accttccatttcgccggcagaggcgagatgaacgtcaccctgggtattcccagattacgt
gagatcctcctgattgccagctcgaacatcaaaacacccatgatgagtattccagttctg
atgaacaagaaagccataaagcgggttaaagcgctgcggaagaaactagcccgtgtgtgt
ttggcagaggtgcttcacaaggtggacgtgacggaaaccttacgtatggagggaggaaag
ggaaaaaaatcaagagtcttcaaactcgccttccactttctgccccccgagcgataccag
caggacaagcagctcactcctcaacagattcttcatttcatggagcaaaggttctttcgt
ctgctcttagaggccattaagaagctgaacgctaaacttgcgtctctcagcgctctggac
acgcgcagggccacgccgggaattgacgatcgtgaagtggccgccaccaccaagggcaga
gaggatgctgaaggtgaggattcagatgaagacaggattgtggatgatgaggcgaatgaa
ggagacactgacgcgaccgatgccaggatgaaggcgaaacgagatgaagaggtggactac
gaaggtgaggatggggaggatgagggcaacgatgaagaacatgccgatgacgaacaggct
gatgacagacaggaagaggcggagtcttcagagcttccaaacgaagggtccagtgaaagc
acaccacagagccagagaaacggcgcttctaaacagctcaatattgattcacaagatgag
gaaatgcggatcaattcagtgctgcggttcagcgacgtcattgaggactacaaatatgac
agcgaacatggactgtggtgtgagctgaccatggtccttcccgtcagtaaggtgcacgtt
gaccttacatcagtggtggtcaaacaggctcggaacgctgtggtcatggagaccaagggc
atcgcacgctgcttactgaacgaggtcaccaccaaacagggtaataaagagctgatgctt
aacacggaggggatcaacatgcaggagctcttcaaatataccgatatcctggacctgaat
cgattgtactccaacgagatccacgccatggccaacacgtatggcattgaggtggccctc
aaggtcatcgagaaggagatcaaagatgtctttgccgtctatggcattgaggtggaccca
cgtcacctctctctagtggctgactacatgtgttttgagggagtttataaacctctcaac
cgcttcggtatccagtccaacagttcacccctgcagcagatgacctttgagaccagtttt
aagttcttgaaacaggccacaatgctgggttcctacgacaaactgacttcgccttcagct
tgtttggttgtagggaaagttgtcaaaggaggaacgggaattttcgatctgaaacagcca
ttacagtaa
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