Terrabacter sp. C0L_2: U5C87_21435
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Entry
U5C87_21435 CDS
T09725
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ted
Terrabacter sp. C0L_2
Pathway
ted03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ted00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U5C87_21435 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ted03021
]
U5C87_21435 (rpoB)
03400 DNA repair and recombination proteins [BR:
ted03400
]
U5C87_21435 (rpoB)
Enzymes [BR:
ted01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U5C87_21435 (rpoB)
Transcription machinery [BR:
ted03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U5C87_21435 (rpoB)
DNA repair and recombination proteins [BR:
ted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U5C87_21435 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WVM96535
LinkDB
All DBs
Position
complement(4605026..4608481)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSTAQTPSGRLSFAKIREPLEVPDLLALQTESFDWLLGNERWQARVAAAKAEGRTDVPDR
SGLEEIFEEISPIEDFSGSMSLSFRDHRFEETRKTIESCKERDQTYDAPLFVTAEFMNAQ
TGEIKSQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFERTPDKTSDKDIYTAK
IIPSRGAWLEFEIDKRDMVGVRVDRKRKQSVTVLLKALGWTEAQILEEFGEFESMRLTLE
KDHTQGQDDALLDIYRKLRPGEPPTKEAAQTLLDNLYFNGKRYDLAKVGRYKVNKKLGLD
ASINDSTLSIDDIVKTIKFIVTLHDGQDSMKGTKNGEEIDVRVEVDDIDHFGNRRLRSVG
ELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQ
NNPLAGLTHKRRLSALGPGGISRDRAQMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLAS
YGRINAFGFIETPYRKVRDGHVTDEIDYLSADEEDRYVVAQANAPLDKQNNFTEDRVLVR
TKGGEVELVPGDEVDYMDVSPRQMVSAATAMIPFLEHDDANRALMGANMQRQAVPLVKSE
APIVGTGMEFRAALDSGDVVRAEKAGVVQEVSADLVTVANDDGTYQTYRIAKFARSNQGT
SYNQVVVVNEGDRLEAGGVIADGPATEGGEMALGRNLLVAFMSWEGHNYEDAIILSQRLV
QDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRVGAEVRDGDLL
VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVKEFRADLGDDLP
PGVNQLVRVYVANKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDVVLNPHGV
PRRMNLGQILELHLGWAASRGWKIEGNPEWAKEIAPDAHEAPAGSRVATPVFDGASEDVV
TGLLDSTLKTRDGVRLIDASGKTRLFDGRSGEPFPEPVAVGYMYILKLHHLVDDKIHARS
TGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTIKSDDVPGRVKVYEA
IVKGENIPDSGIPESFKVLLKEMQSLCLNVEVLSSDGTTIEMKESDEEVFRAAEELGIDL
SRREPSSVEEV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcacagaccccttcggggcgtctgtccttcgcgaagattcgcgaaccactc
gaggtccccgacctcctggcgcttcagacggagagcttcgactggctgctcggcaacgag
cgctggcaggctcgcgtcgccgcggccaaggccgagggacgcaccgacgtccccgaccgg
tccgggctcgaggagatcttcgaggagatctccccgatcgaggacttcagcggctcgatg
tcgctgtcgttccgcgaccaccgcttcgaggagacccgcaagacgatcgagtcgtgcaag
gagcgcgaccagacgtacgacgcacccctcttcgtcaccgccgagttcatgaacgcccag
acgggtgagatcaagagccagacggtcttcatgggtgacttcccgctcatgaccgagcgc
ggcaccttcatcatcaacggcaccgagcgtgtcgtcgtcagccagctcgtccgcagcccg
ggcgtctacttcgagcgcacgcccgacaagacgtccgacaaggacatctacacggccaag
atcatcccgagccgcggtgcctggctcgagttcgagatcgacaagcgcgacatggtcggc
gtccgcgtcgaccgcaagcgcaagcagtcggtcacggtgctcctcaaggccctcggctgg
accgaggcccagatcctcgaggagttcggcgagttcgagtcgatgcgcctcaccctggag
aaggaccacacccagggccaggacgacgcgctgctcgacatctaccgcaagctgcgcccg
ggcgagccgccgaccaaggaggccgcgcagaccctgctcgacaacctctacttcaacggc
aagcgctacgacctcgccaaggtcggccgctacaaggtgaacaagaagctcggtctcgac
gcctcgatcaacgactcgaccctgtcgatcgacgacatcgtcaagacgatcaagttcatc
gtcacgctgcacgacggccaggactcgatgaagggcacgaagaacggcgaggagatcgac
gtccgcgtcgaggtcgacgacatcgaccacttcggcaaccgtcgcctccgctccgtcggc
gagctcatccagaaccaggtccgcaccggcctgtcccgcatggagcgcgtcgtccgcgag
cgcatgaccacgcaggacgtcgaggcgatcaccccgcagaccctgatcaacatccgcccc
gtggtggcctcgatcaaggagttcttcggcacgtcgcagctctcgcagttcatggaccag
aacaacccgctcgcgggtctgacgcacaagcgtcgcctgtccgcgctcggcccgggtggt
atctcccgtgaccgtgcccagatggaggtccgtgacgtccacccgtcgcactacggccgc
atgtgcccgatcgagaccccggaaggcccgaacatcggcctcatcggctcgctcgcgtcc
tacggtcgcatcaacgcgttcggcttcatcgagacgccgtaccgcaaggtgcgtgacggt
cacgtcaccgacgagatcgactacctgtccgccgacgaggaggaccgctacgtcgtcgcc
caggccaacgcgccgctcgacaagcagaacaacttcaccgaggaccgcgtgctcgtgcgc
accaagggtggagaggtcgagctcgtccccggcgacgaggtcgactacatggacgtctcg
ccgcgccagatggtctcggccgcgaccgcgatgatcccgttcctcgagcacgacgacgcc
aaccgtgccctcatgggcgccaacatgcagcgtcaggccgtcccgctcgtcaagagcgag
gcgccgatcgtcggcaccggcatggagttccgcgccgccctcgactcgggcgacgtcgtc
cgcgccgagaaggccggcgtcgtgcaggaggtgtcggccgacctcgtcaccgtcgccaac
gacgacggcacctaccagacgtaccgcatcgccaagttcgcgcgctccaaccaaggcacg
agctacaaccaggtggtcgtcgtcaacgagggtgaccgtctcgaggccggcggcgtcatc
gccgacggtcccgccaccgagggtggcgagatggcgctcgggcgcaacctgctcgtcgcg
ttcatgtcgtgggagggccacaactacgaggacgcgatcatcctcagccagcgcctggtc
caggacgacgtcctctcctcgatccacatcgaggagcacgaggtcgacgcccgtgacacc
aagctcggccccgaggagatcacccgggacatcccgaacgtctccgaggaggtcctggcc
gacctcgacgagcgcggcatcatccgcgtcggcgccgaggtccgcgacggcgacctgctc
gtcggcaaggtcacgcccaagggtgagaccgagctgacgccggaggagcgcctgctgcgc
gccatcttcggtgagaaggcccgcgaggtccgcgacacgagcctcaaggtgccccacggc
gagaccggcacggtcatcggcgtcaaggagttccgcgccgacctgggcgacgacctgccg
cccggcgtcaaccagctcgtccgcgtctacgtggccaacaagcgcaagatcaccgacggt
gacaagctcgccggccgccacggcaacaagggtgtcatctccaagatcctcccggtcgag
gacatgcccttcctcgaggacggcacgccggtcgacgtcgtgctcaacccgcacggtgtg
ccgcgacggatgaacctcggccagatcctcgagctgcacctcggctgggccgcctcgcgc
ggctggaagatcgagggcaacccggagtgggccaaggagatcgcgcccgacgcgcacgag
gcccccgcgggctcgcgcgtggcgacgccggtcttcgacggtgcctccgaggacgtggtc
acgggtctgctcgactcgacgctcaagacgcgcgacggggtccgcctcatcgacgcctcg
ggcaagacgcgcctgttcgacggccgctccggcgagccgttccccgagccggtggccgtc
ggctacatgtacatcctcaagctccaccacctcgtcgacgacaagatccacgctcgctcc
acgggtccctactcgatgatcacccagcagccgctcggcggtaaggcccagttcggtggc
cagcgcttcggtgagatggaggtctgggccctcgaggcgtacggcgccgcctacacgctc
caggagctgctgacgatcaagtcggacgacgttcccggtcgcgtgaaggtctacgaggcc
atcgtcaagggcgagaacatccccgactcgggcatcccggagtcgttcaaggtcctcctc
aaggagatgcagtcgctgtgtctcaacgtcgaggtcctgagctccgacggcacgacgatc
gagatgaaggagtccgacgaggaggtcttccgcgcggcggaggagctcggcatcgacctg
agccggcgtgagccgtccagcgtcgaagaggtctga
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