Thermosynechococcus vestitus: tll0952
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Entry
tll0952 CDS
T00090
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tel
Thermosynechococcus vestitus
Pathway
tel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
tll0952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tel03400
]
tll0952
Enzymes [BR:
tel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
tll0952
DNA repair and recombination proteins [BR:
tel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
tll0952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAC08504
UniProt:
Q8DKA7
LinkDB
All DBs
Position
complement(974436..977864)
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AA seq
1142 aa
AA seq
DB search
MSLMAIPRSWGKLPLTAELLSKLQHQRELVLTGMPRLVKGLVATTLAQESRQSLCVITST
LEEGGRWAAQLELMGWDAVFFYPTSEASPYDLFDLEGEMVWGQLQVLVESDRPNIAIVTT
ERALQPHLPPPEQFRAACLTLQVGQAYSLGEVATTLAALGYERVSLVETEGQWSRRGDIV
DIFPVSAELPVRLQWFGDEIESIREFDPASQRSLHTEGDRLDVLEQVTLTPISFTPLIAQ
ALRAADHAHLIPEDQEGLRRYLGLAFPEPASLLDYLPAQTLIAVDEPPLCVAHGDRWYEH
THTYWQSLETPPPPIHRPWSASAQALERFQRLHLYELASEGLGLNLSARAVPAIPHQFGR
LAATLREERDKGYTVWLVSAQPSRSVALLQEHDCPAQFVPNPKDFPAIDKLQQQRLPIAL
KASGLAEISGFILPTFRTVLVSDREFFGQHNLVNLGYVRKRRRAAAKQVDLNKLQPGDYV
VHRQHGIGQFLRLETLTINNETREYLVLQYADGILRVAADQLNSLSRYRTQEDRAPQLNK
LTGNTWERTKARVRKAIKKVAVDLLQLYAQRAQQRGFAFPPDTPWQREMEDSFPYQPTPD
QLKAIQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVMAGKQVAVLAPTTILTQQ
HYHTLKERFAPYPIQVGLLNRFRSERERQDLLQKLKIGEIDVVVGTHQLLSNSVKFRDLG
LLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRR
PIQTHLAPYDPETVRSAIRQELDRGGQVFYVVPRVEGIEAVAAKLQGMVVGARILIAHGQ
MAEGELESTMLGFSNGEADILVCTTIIESGLDIPRVNTILVEDAQRFGLAQLYQLRGRVG
RAGIQAHAWLFYPRQEVLTDAARQRLRAIQEFTQLGSGYQLAIRDMEIRGVGNLLGAQQH
GQLDSVGFDLYVELLEEAIAEIRGQEIPTVDDTQIDLNVTAFIPADYMPDLAQKMAAYRA
VSAATTKEDLMQLAAEWSDRYGALPKSVQQLLRVVELKQLARQCGISRIRPEGKQHVILE
TSMAEPAWKLLLEQLPTHLQSRFVYSQGKITVRGLGTQPVEKQLEQLIDWFSQMKTTVAT
AP
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtccttaatggcaattccccgcagttggggtaagctgccgctgacggctgaactgctc
agcaaattacaacaccaacgggaactcgtcctcacagggatgccccgccttgtcaagggc
ttggtggccaccaccttggcccaggagagtcggcaatcgctgtgtgtgattacttccacc
ctagaggaggggggacgctgggcggcgcaattggaactcatgggttgggatgcggttttc
ttttacccaacatcggaggcttctccctatgacctctttgacttggagggggagatggtc
tgggggcaactgcaagtcctcgtcgagagcgatcgccccaatattgcaattgtcaccacg
gaacgggcactgcaaccccatttgccgccaccagagcagtttcgtgccgcctgtttaacc
ttgcaggtgggtcaggcgtactccctaggggaggtggccaccaccctggcagccctgggt
tatgagcgggtttccttagtggaaacggagggtcagtggagtcggcgcggtgacattgtt
gatattttccccgtctcggcggaactaccagtgcgcctgcagtggttcggcgatgagatt
gagtcgattcgtgagtttgatccggccagtcaacgctccctacacaccgagggggatcgc
ctggatgtccttgagcaggtgaccctgacgcccattagttttactcccctgattgcccaa
gccctgcgggcagcggatcacgcccatctgattcccgaggatcaggagggactgcggcgc
tatcttgggttggcttttccggagcccgcttccctcttggattatttgcctgcccaaacc
ctcattgccgtggatgagccccccctgtgtgttgcccatggggatcgctggtatgaacac
acccacacctactggcaaagccttgaaacacccccgccccccatccatcgcccctggtcc
gccagtgcccaagccctcgagcggttccaacggctgcacctctatgaactggccagtgag
gggttaggtctcaatttgtcagcacgggcggttccagcgattcctcaccaatttggtcgc
ttggcggcaacgctgcgggaggagcgggacaagggctataccgtatggttggtctctgcc
cagccgagtcgctctgtcgcgcttttgcaggagcacgattgccccgcccaatttgtgccc
aatcccaaggattttccggccattgataagctgcaacagcagcgactgcccattgccctg
aaggccagcggtctagcggaaatcagtggctttatcttgcccacgttccgcacggtgctg
gtgagcgatcgcgagttctttggccagcataacttggtcaaccttggctatgtgcgcaaa
cgccgccgcgctgctgctaaacaggtggatctcaacaagctgcaaccgggggactacgtc
gtccatcgccaacacggcattggtcagtttctccgcctagaaacgctcaccattaacaat
gaaacccgcgagtacttagttttgcagtacgccgatggcattctccgcgttgctgcggat
caactcaacagtctttcgcgctaccgcacccaggaagacagggccccccaactcaacaaa
ttaacgggcaacacttgggaacggaccaaagcccgggtgcgcaaggccatcaaaaaagtg
gcggtggatctgctacaactctatgcccaacgcgcccaacaacgggggtttgccttcccg
ccagatacgccctggcagcgggagatggaggactcatttccctatcaacccacccccgat
caactcaaggccatccaagaggttaaggcggatatggagagcgatcgccccatggatcgg
ctagtgtgcggggatgttggctttggtaaaactgaggtggccattcgcgccatctttaag
gcggtaatggcgggcaagcaggtggccgttcttgcccccaccaccatcctgacgcagcag
cattaccataccctcaaggaacgctttgccccctatccaattcaagtggggctactcaac
cgctttcgcagtgagcgggagcgccaagacctcctgcaaaagctaaagatcggcgaaatt
gatgtggtggttggcacccatcaactcctcagcaacagcgtcaaattccgggacttagga
ctgctggtggtggatgaggaacaacgttttggtgtcaaccaaaaggagaaaatcaaagcc
ctcaaaacccaagtggatgtcctcaccctcagtgccacaccgattccgcgcaccctctat
atggccctgtcgggggtgcgagaaatgagcctgattaccacacctccgccctcgcggcgc
ccgattcaaacccatcttgccccctatgacccagaaacagtccgcagtgcaattcgccaa
gaattggatcgggggggtcaagttttctatgttgtcccccgcgttgagggcattgaggcg
gtggcggccaagctccaaggaatggtggtcggtgcccgtattctgattgcccacggccag
atggcagagggggaactggaatcgacgatgcttggctttagcaatggcgaggccgatatt
ctggtttgtacgactatcattgagtccggcttagatattccccgcgtcaatacgattttg
gtggaggatgcccagcggtttgggttggcacagctttatcaactgcggggtcgcgttggc
cgagcgggaattcaggcccatgcctggttgttttacccgcgtcaagaggtgctcaccgat
gccgcccgtcaacggctgcgggcaattcaggaatttacgcaactgggatcgggttaccaa
ctggcgatacgagacatggaaattcgcggtgtgggcaatctcctaggggcacagcagcac
ggtcaactggacagtgttggctttgatttgtacgtggaactgctagaggaggcgatcgct
gaaattcgtggtcaggagattcccaccgttgacgatacccaaatcgatctcaatgtcact
gcctttattcccgctgactatatgcccgacttggcgcaaaagatggccgcctaccgcgcc
gtttccgctgccacaaccaaagaagacttgatgcaattggccgcagagtggagcgatcgc
tatggcgcattgcccaaatcagttcagcaactgctgcgggttgttgaactcaagcaactg
gcgcgtcagtgtggcattagtcgcattcgcccggaagggaagcagcatgtgatcttggaa
acttccatggcggaaccagcttggaaactgctgctggagcaactgcccacccatctccaa
agtcgatttgtctatagtcagggcaaaatcactgtgcggggtctagggacacaacccgta
gaaaaacaactggagcagctcattgactggttcagccaaatgaaaacaaccgttgctaca
gctccctaa
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