Terrisporobacter hibernicus: JW646_08825
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Entry
JW646_08825 CDS
T07658
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tem
Terrisporobacter hibernicus
Pathway
tem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JW646_08825 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tem03021
]
JW646_08825 (rpoC)
03400 DNA repair and recombination proteins [BR:
tem03400
]
JW646_08825 (rpoC)
Enzymes [BR:
tem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JW646_08825 (rpoC)
Transcription machinery [BR:
tem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JW646_08825 (rpoC)
DNA repair and recombination proteins [BR:
tem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JW646_08825 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
Pkinase_fungal
Motif
Other DBs
NCBI-ProteinID:
UEL49523
LinkDB
All DBs
Position
complement(1809820..1813305)
Genome browser
AA seq
1161 aa
AA seq
DB search
MFELNNFESIKIGLASPERIREWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVICDRCGVEVTKSKVRRSRMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVINPGETGLNEKELINEDKFRTVYREHGNTFEVGMGAEAVKKLLQ
NIDLEKESKMLRDDLKDSTGQKRVRTIRRLEVVEAFRKSGNKPEWMILDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPRK
MALELFKPFVMDRLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIKSHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNIL
APKDGSPITTPSQDMVLGSYYLTIESQGGEKGTGSIFKDYNELLMAYETKAVELHATVKV
RTAFPDGTTGLIESTVGRFIFNENMPQDLGFVDRNVDKFKLEIDFLVDKKALGKIIEKCF
RRHGNTKTAEVLDHIKALGFKYSTVGGITVAVADMKVPKEKAEYIAAAEKQVDKFEKAYG
RGLISNEERYEKVIETWTETTNKVTDALMNGLERMNNIFIMAHSGARGSKNQIRQLAGMR
GLMANASGKTVEIPVKSNFREGLSVMEYFISSHGARKGLSDTALRTADSGYLTRRLVDVS
QDVIVRDYDCGTTDTSTIVAIKEGNEVIEEIYDRIVGRYTIDPIVNPNTGKVIVEADAMI
MEEQAEEMVAAGIEEVQIRTVLNCKTRHGVCSKCYGRNLATGKEVNIGEAIGIIAAQSIG
EPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLAVIAEIDGRVEIDETGKRKE
IIVIPHEGEKQVYAIAYNSRLRVKQGQMVKAGDALTQGSINPHDIVRVKGIGGVQEYIVK
EVQRVYRLQGVDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFEKCNDEAIVN
GLRPATAKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILGK
LIPAGTGMKKYRNIAVEKIEE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaacaatttcgagtcgattaaaataggattagcttctccagaaagaata
agagaatggtcttatggtgaagtgaaaaaaccagaaacgataaactaccgtactttaaag
ccagagaaagacggtttattctgtgaaagaatatttggaccacaaaaagactgggaatgt
cattgtggtaaatacagaagagttagatataaaggtgtaatatgtgacagatgtggtgtt
gaagtcactaaatctaaagtaagaagatctagaatgggacatatagagcttgctgctcct
atgtctcacatctggtacttcaaaggaataccaagtagaatgggtcttttacttgatatg
tcacctagatcactagaaaaaatattatatttcgcttcttatgttgttattaatccagga
gaaacaggattaaatgaaaaagagttaataaacgaagataagtttagaactgtttacaga
gaacatggaaacacttttgaagttggaatgggtgcagaagctgttaagaaacttttacaa
aatatagacttagaaaaagagtctaaaatgttaagagatgacttaaaagacagtactgga
caaaaaagagtaagaacaataagaagattagaagttgttgaagcattcagaaaatctggt
aataagccagaatggatgatattagatgctattccagtaattccaccagacttaagaccg
atggttcaattagatgggggtagatttgcaacttctgatttaaatgacttatatagaaga
gttataaatagaaataacagacttaaaagattattagaacttggagctcctgatatcatc
gttagaaatgaaaagagaatgcttcaagaagcagtagatgctctaatagacaatggtaga
aggggaagaccggtaactgggcctggtaatagaccacttaagtctttatcagatatgtta
aaaggtaagcaaggacgtttccgtcaaaacttacttggaaaacgtgttgactattcagga
cgttctgttatcgttgttggaccagagcttaaattctatcaatgtggtcttccaagaaaa
atggcacttgaattattcaaaccatttgtaatggatagattagttaaagaaggttatgcg
cacaatattaagagtgccaaatctatagttgaaaaagtaaaaccagaagtatgggatgta
cttgaagatgtaatcaagagtcacccagttttacttaaccgtgcaccgacactacacaga
ttaggtatacaagcatttgagccaatattagttgaaggaaaagcaatcaagttacatcca
cttgtatgtacggcatataatgctgacttcgatggtgaccaaatggcggttcacgttcct
ttatctgtggaagcgcaagcagaagcaagattcttaatgctttctgtaaataatatactt
gcgcctaaagatggttctcctataactactccatctcaagatatggttctaggaagttat
tatttaacaatagaatcacaaggtggagaaaaaggaacaggaagtatatttaaagactac
aatgaattattaatggcttacgaaactaaagctgttgaattacatgctactgttaaagta
agaacagcgttcccagatggaacgacaggattaatagaaagtactgtaggtagatttata
ttcaatgaaaatatgcctcaggacttaggatttgtagatagaaatgtagataaattcaaa
ttagaaatagatttcttagttgataaaaaggcattaggcaaaataatagagaaatgcttt
agaagacatggtaatacaaaaactgcagaagttctagaccacataaaagctttaggattt
aaatattctacagttggtggtataacagttgctgttgcagatatgaaagtaccaaaagaa
aaagcagaatatatagctgctgctgaaaaacaagttgataagtttgaaaaagcttacgga
agaggacttatatctaacgaagaaagatatgagaaagttatagaaacttggactgaaact
acaaataaagtaactgacgcacttatgaacggacttgaaagaatgaacaacatttttata
atggcccattcaggagccagagggtctaagaatcagataagacagttagctggtatgcgt
ggtcttatggccaatgcatctggtaaaacagtagaaatcccagttaaatctaacttccgt
gaagggttatcagttatggaatactttatatcatcacatggtgctagaaaaggactttcg
gatacagctcttcgtacagccgattcaggatacttaacaagaagacttgttgacgtttct
caagatgttatagttagagattatgattgtggaactactgacacttcaacaatcgtagct
ataaaggaaggtaacgaggttattgaagaaatctatgacagaatagtaggaagatatact
atagatcctatagtaaatcctaatactggtaaagttatagtggaagctgatgctatgata
atggaagaacaagctgaagagatggtagcagcagggatagaagaagttcaaataagaact
gttcttaactgtaaaactagacacggtgtttgttcaaaatgttatggtagaaacttagct
actggaaaagaagttaatataggtgaagctataggtataatagccgctcaatcaatcggt
gaacctggtacacagcttacaatgcgtacattccatacaggtggggttgccggtggagat
ataactcagggtcttccgagggttgaagagttatttgaagcaagaaaacctaaaggttta
gctgtaatagctgaaatagatggtagagttgaaatagatgaaacaggtaagagaaaagaa
ataatagttataccacatgaaggtgaaaaacaagtttacgcaatagcttataactctaga
ttaagagttaaacaaggtcaaatggttaaagcaggagatgctttaacacaaggttctata
aatccacacgatatcgtaagagttaaaggtataggtggagttcaagaatatatagttaaa
gaggttcaaagagtttatagacttcaaggggttgacgttaacgacaagcatatagaagtt
atagtaagacaaatgttgtctaaagttaaggttgaagatccgggagatacagatttatta
ccaggtggttatgaagatgtattaacatttgaaaaatgtaatgatgaagctatagttaat
ggactaagaccagcaacagctaagagagtattacttggaataactaaagcctctcttgct
acagaatcgttcctatcagctgcttcattccaagaaactacaagggttttaactgaagct
gcaataaaaggaaaagaagaccacttaataggactaaaagagaatgttatattaggaaag
ttgattccagcaggaacaggaatgaaaaaatatagaaatatagccgttgaaaagatagaa
gaataa
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