KEGG   Terrisporobacter hibernicus: JW646_08825
Entry
JW646_08825       CDS       T07658                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tem  Terrisporobacter hibernicus
Pathway
tem03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JW646_08825 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tem03021]
    JW646_08825 (rpoC)
   03400 DNA repair and recombination proteins [BR:tem03400]
    JW646_08825 (rpoC)
Enzymes [BR:tem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JW646_08825 (rpoC)
Transcription machinery [BR:tem03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JW646_08825 (rpoC)
DNA repair and recombination proteins [BR:tem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JW646_08825 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Biotin_lipoyl_2 Apocytochr_F_C Pkinase_fungal
Other DBs
NCBI-ProteinID: UEL49523
LinkDB
Position
complement(1809820..1813305)
AA seq 1161 aa
MFELNNFESIKIGLASPERIREWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVICDRCGVEVTKSKVRRSRMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVINPGETGLNEKELINEDKFRTVYREHGNTFEVGMGAEAVKKLLQ
NIDLEKESKMLRDDLKDSTGQKRVRTIRRLEVVEAFRKSGNKPEWMILDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPRK
MALELFKPFVMDRLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIKSHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNIL
APKDGSPITTPSQDMVLGSYYLTIESQGGEKGTGSIFKDYNELLMAYETKAVELHATVKV
RTAFPDGTTGLIESTVGRFIFNENMPQDLGFVDRNVDKFKLEIDFLVDKKALGKIIEKCF
RRHGNTKTAEVLDHIKALGFKYSTVGGITVAVADMKVPKEKAEYIAAAEKQVDKFEKAYG
RGLISNEERYEKVIETWTETTNKVTDALMNGLERMNNIFIMAHSGARGSKNQIRQLAGMR
GLMANASGKTVEIPVKSNFREGLSVMEYFISSHGARKGLSDTALRTADSGYLTRRLVDVS
QDVIVRDYDCGTTDTSTIVAIKEGNEVIEEIYDRIVGRYTIDPIVNPNTGKVIVEADAMI
MEEQAEEMVAAGIEEVQIRTVLNCKTRHGVCSKCYGRNLATGKEVNIGEAIGIIAAQSIG
EPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLAVIAEIDGRVEIDETGKRKE
IIVIPHEGEKQVYAIAYNSRLRVKQGQMVKAGDALTQGSINPHDIVRVKGIGGVQEYIVK
EVQRVYRLQGVDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFEKCNDEAIVN
GLRPATAKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILGK
LIPAGTGMKKYRNIAVEKIEE
NT seq 3486 nt   +upstreamnt  +downstreamnt
ttgtttgaattaaacaatttcgagtcgattaaaataggattagcttctccagaaagaata
agagaatggtcttatggtgaagtgaaaaaaccagaaacgataaactaccgtactttaaag
ccagagaaagacggtttattctgtgaaagaatatttggaccacaaaaagactgggaatgt
cattgtggtaaatacagaagagttagatataaaggtgtaatatgtgacagatgtggtgtt
gaagtcactaaatctaaagtaagaagatctagaatgggacatatagagcttgctgctcct
atgtctcacatctggtacttcaaaggaataccaagtagaatgggtcttttacttgatatg
tcacctagatcactagaaaaaatattatatttcgcttcttatgttgttattaatccagga
gaaacaggattaaatgaaaaagagttaataaacgaagataagtttagaactgtttacaga
gaacatggaaacacttttgaagttggaatgggtgcagaagctgttaagaaacttttacaa
aatatagacttagaaaaagagtctaaaatgttaagagatgacttaaaagacagtactgga
caaaaaagagtaagaacaataagaagattagaagttgttgaagcattcagaaaatctggt
aataagccagaatggatgatattagatgctattccagtaattccaccagacttaagaccg
atggttcaattagatgggggtagatttgcaacttctgatttaaatgacttatatagaaga
gttataaatagaaataacagacttaaaagattattagaacttggagctcctgatatcatc
gttagaaatgaaaagagaatgcttcaagaagcagtagatgctctaatagacaatggtaga
aggggaagaccggtaactgggcctggtaatagaccacttaagtctttatcagatatgtta
aaaggtaagcaaggacgtttccgtcaaaacttacttggaaaacgtgttgactattcagga
cgttctgttatcgttgttggaccagagcttaaattctatcaatgtggtcttccaagaaaa
atggcacttgaattattcaaaccatttgtaatggatagattagttaaagaaggttatgcg
cacaatattaagagtgccaaatctatagttgaaaaagtaaaaccagaagtatgggatgta
cttgaagatgtaatcaagagtcacccagttttacttaaccgtgcaccgacactacacaga
ttaggtatacaagcatttgagccaatattagttgaaggaaaagcaatcaagttacatcca
cttgtatgtacggcatataatgctgacttcgatggtgaccaaatggcggttcacgttcct
ttatctgtggaagcgcaagcagaagcaagattcttaatgctttctgtaaataatatactt
gcgcctaaagatggttctcctataactactccatctcaagatatggttctaggaagttat
tatttaacaatagaatcacaaggtggagaaaaaggaacaggaagtatatttaaagactac
aatgaattattaatggcttacgaaactaaagctgttgaattacatgctactgttaaagta
agaacagcgttcccagatggaacgacaggattaatagaaagtactgtaggtagatttata
ttcaatgaaaatatgcctcaggacttaggatttgtagatagaaatgtagataaattcaaa
ttagaaatagatttcttagttgataaaaaggcattaggcaaaataatagagaaatgcttt
agaagacatggtaatacaaaaactgcagaagttctagaccacataaaagctttaggattt
aaatattctacagttggtggtataacagttgctgttgcagatatgaaagtaccaaaagaa
aaagcagaatatatagctgctgctgaaaaacaagttgataagtttgaaaaagcttacgga
agaggacttatatctaacgaagaaagatatgagaaagttatagaaacttggactgaaact
acaaataaagtaactgacgcacttatgaacggacttgaaagaatgaacaacatttttata
atggcccattcaggagccagagggtctaagaatcagataagacagttagctggtatgcgt
ggtcttatggccaatgcatctggtaaaacagtagaaatcccagttaaatctaacttccgt
gaagggttatcagttatggaatactttatatcatcacatggtgctagaaaaggactttcg
gatacagctcttcgtacagccgattcaggatacttaacaagaagacttgttgacgtttct
caagatgttatagttagagattatgattgtggaactactgacacttcaacaatcgtagct
ataaaggaaggtaacgaggttattgaagaaatctatgacagaatagtaggaagatatact
atagatcctatagtaaatcctaatactggtaaagttatagtggaagctgatgctatgata
atggaagaacaagctgaagagatggtagcagcagggatagaagaagttcaaataagaact
gttcttaactgtaaaactagacacggtgtttgttcaaaatgttatggtagaaacttagct
actggaaaagaagttaatataggtgaagctataggtataatagccgctcaatcaatcggt
gaacctggtacacagcttacaatgcgtacattccatacaggtggggttgccggtggagat
ataactcagggtcttccgagggttgaagagttatttgaagcaagaaaacctaaaggttta
gctgtaatagctgaaatagatggtagagttgaaatagatgaaacaggtaagagaaaagaa
ataatagttataccacatgaaggtgaaaaacaagtttacgcaatagcttataactctaga
ttaagagttaaacaaggtcaaatggttaaagcaggagatgctttaacacaaggttctata
aatccacacgatatcgtaagagttaaaggtataggtggagttcaagaatatatagttaaa
gaggttcaaagagtttatagacttcaaggggttgacgttaacgacaagcatatagaagtt
atagtaagacaaatgttgtctaaagttaaggttgaagatccgggagatacagatttatta
ccaggtggttatgaagatgtattaacatttgaaaaatgtaatgatgaagctatagttaat
ggactaagaccagcaacagctaagagagtattacttggaataactaaagcctctcttgct
acagaatcgttcctatcagctgcttcattccaagaaactacaagggttttaactgaagct
gcaataaaaggaaaagaagaccacttaataggactaaaagagaatgttatattaggaaag
ttgattccagcaggaacaggaatgaaaaaatatagaaatatagccgttgaaaagatagaa
gaataa

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