KEGG   Tachysurus fulvidraco (yellow catfish): 113643510
Entry
113643510         CDS       T08119                                 
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030  DNA replication
tfd03420  Nucleotide excision repair
tfd03430  Mismatch repair
tfd03440  Homologous recombination
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113643510 (rpa1)
   03420 Nucleotide excision repair
    113643510 (rpa1)
   03430 Mismatch repair
    113643510 (rpa1)
   03440 Homologous recombination
    113643510 (rpa1)
   03460 Fanconi anemia pathway
    113643510 (rpa1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tfd03000]
    113643510 (rpa1)
   03032 DNA replication proteins [BR:tfd03032]
    113643510 (rpa1)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113643510 (rpa1)
Transcription factors [BR:tfd03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    113643510 (rpa1)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    113643510 (rpa1)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     113643510 (rpa1)
   MMR (mismatch excision repair)
     113643510 (rpa1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     113643510 (rpa1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF5521 Por_Secre_tail CATSPERD-E_C
Other DBs
NCBI-GeneID: 113643510
NCBI-ProteinID: XP_027003594
LinkDB
Position
11:complement(10395132..10426534)
AA seq 610 aa
MTVKLSEGAIEALIKGKEVTNPILQLINIRKLDSGNGPVRFRLMMSDGLHTMSSFMLATP
LNSLAEQNLVAPNCVCLLKKSVTNVLKDGRTVVIILDLEVIKPADQMAGKIGDPTPYVEG
QSKAPQTVPAHAPSASPATSAGSSRPLQPQNGGSMNRGSSRDFGKKPMTAPSTPGGTSKV
VPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDK
FFSLIEQGKVYYISKGTLKIANKQFTSLKNDYEMTLNGESTIIPCDDSSDVPMVQCDFVS
IADLDARDKDAIVDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKIIQVTMWGNEA
ETFDGTGQPILAIKGARLSDFGGRSLSTLYSSTLMINPDIPEAYKLRGWYDKEGHALDGQ
SMTEMRGGGGGGPTNWKTLADVKNEHLGHGDKADYFTCIATIVYMRKENCLYQACPSKDC
NKKVVDQQNGMYRCEKCDKEFPEFKYRLMLSANVADFGDNQWVTCFQDTAETILGQKSDY
IGQLRDSNEAAFDEVFQHANFSTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYSKRL
IMSIRKHAAH
NT seq 1833 nt   +upstreamnt  +downstreamnt
atgacggttaaattgtccgagggcgcaatcgaggccctgattaaagggaaagaggttaca
aacccaattcttcagctgattaatattcgaaagctcgattcaggtaatggaccagttcgc
tttcgcctcatgatgagcgatggccttcacaccatgtcctccttcatgcttgccacccct
ctgaactccctggctgaacaaaaccttgtggctcccaactgtgtgtgcttgctgaagaaa
agtgtcaccaatgttctaaaggatggacgcactgtagtaattatcctggacctggaggta
attaaacctgcagatcagatggcaggaaaaatcggagacccaactccttatgttgagggt
caatccaaggctccacagactgttcctgctcatgctccatctgcttctccggctacttct
gctggttcctcacgtccactgcagccacaaaatggaggctccatgaatagaggctccagt
cgtgattttggaaagaagcctatgacagctcccagcacaccaggaggcacttcaaaagta
gtgcctattgccagccttaatccctaccagtcaaaatggaccattagagcacgagtgacc
aacaagagcgccattcgtacctggagcaactctcgaggggatgggaagctcttctccatg
gagattgttgacgaaagtggagaaattagagtgactggttttaatcaggaggtggacaaa
ttcttctccctgatcgaacaggggaaggtgtactacatctctaagggcactctgaagatc
gccaacaaacagttcacatcccttaagaatgactatgagatgaccctgaacggcgagtcg
accatcatcccctgtgacgacagctctgacgttcccatggtgcagtgcgactttgtctcc
attgctgatttggatgctcgggataaggacgccattgtggatgtgatcggtgtgtgtaag
agtgtggaggatgtgacacggattacaactaagaacagtcgcgaggtttccaagaggaac
attcagctgatggatatgtctggcaaaattatccaagtcaccatgtggggaaatgaggca
gagacatttgatggcaccggacagcctatcttggcaataaagggtgccagactctcggat
tttggagggcgctctctttccactctctacagcagcacactgatgattaaccctgacatt
cctgaggcatacaaactgcgaggctggtatgataaagagggtcatgccctagatggtcag
tctatgacagaaatgagaggaggaggcggcggaggccccactaactggaagactttggca
gatgtcaaaaacgaacacctgggtcacggcgacaaggctgattacttcacctgtatcgcc
accattgtgtacatgaggaaggagaattgtctgtatcaggcttgtcccagcaaggactgc
aacaaaaaggtggtggaccagcagaatggaatgtaccggtgtgagaagtgtgacaaagag
tttcctgaattcaaatatcgtctcatgctctctgcaaatgttgcagattttggagataac
cagtgggtgacatgctttcaggacactgctgagaccatcctgggccagaaatctgattac
attggccaactcagggactctaatgaggccgcttttgatgaggtcttccagcatgccaat
ttcagcacttttgtctttcgcaaccgagtgaaattggagacctacaatgatgaatctcgc
attaaagtaacggtggtggaggccaagcctgtggatcacaaggaatacagcaagaggctg
atcatgagcatcaggaaacatgcagcacattag

KEGG   Tachysurus fulvidraco (yellow catfish): 113644653
Entry
113644653         CDS       T08119                                 
Symbol
rpa2
Name
(RefSeq) replication protein A 32 kDa subunit isoform X2
  KO
K10739  replication factor A2
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030  DNA replication
tfd03420  Nucleotide excision repair
tfd03430  Mismatch repair
tfd03440  Homologous recombination
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113644653 (rpa2)
   03420 Nucleotide excision repair
    113644653 (rpa2)
   03430 Mismatch repair
    113644653 (rpa2)
   03440 Homologous recombination
    113644653 (rpa2)
   03460 Fanconi anemia pathway
    113644653 (rpa2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113644653 (rpa2)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113644653 (rpa2)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    113644653 (rpa2)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     113644653 (rpa2)
   MMR (mismatch excision repair)
     113644653 (rpa2)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     113644653 (rpa2)
SSDB
Motif
Pfam: RPA_C tRNA_anti-codon TFA2_Winged_2 TAD2
Other DBs
NCBI-GeneID: 113644653
NCBI-ProteinID: XP_027005490
LinkDB
Position
3:16236564..16243241
AA seq 275 aa
MWNQGSYGEASMGGGYTQSPGGFGSPAASQGEKKGRARAQQIVPCTVSQLMTAAQAEDVF
RVGEVEVAQVTIVGIIRNTDKSMTNIQYKVDDMTAAPMDVKQWVDTEDPSVDSSVIPPDT
YVKVSGNLRSFQNNRSLVAFSVRPLEDMNEITSHMLEVVQAHMLLSKPHTMMGGGGSMNS
STMPMSRPGLGGTLGGSYSGASSMANNGLNPNQNQVLCLIKSCPEPQGISIQELKQRLSG
MSMTIIRQVVDFLSNEGHIFSTIDEDHFRSTDQEA
NT seq 828 nt   +upstreamnt  +downstreamnt
atgtggaaccaaggatcatatggagaggctagcatgggtggaggatacactcagtcaccg
ggtggctttggctcacctgctgcttcccagggagagaaaaaggggagggcacgggcacag
cagatagtcccctgcacagtgtcacagctcatgacagcagcccaggcggaggatgtcttt
agagtaggtgaggtggaggttgcgcaagttactattgttggaatcatcagaaacacagac
aaatccatgactaacattcagtacaaagtggatgacatgacggcggctcccatggatgtc
aagcagtgggtagatacagaggatcctagtgtggacagctcagtcattcctccagacacg
tatgtcaaggtctccggcaacctgcgttcttttcagaataaccggtctttagtggcattc
agtgtccggccattagaggatatgaatgagatcacatctcatatgctggaggttgtgcag
gctcatatgctgctgagcaagccacacactatgatgggaggaggcggcagtatgaacagc
agcacgatgcccatgtctcgccctggcctgggtggcactctgggtggtagctattctggt
gccagttccatggccaataatggattaaaccctaatcaaaatcaggttttatgtctaata
aaaagctgcccagaacctcaggggatcagcatacaggagctaaagcaaagactaagcggc
atgagcatgactataatcaggcaagttgtggactttctcagcaatgaaggacacattttc
tctactatcgatgaggaccacttcagatcaacagatcaagaagcttaa

KEGG   Tachysurus fulvidraco (yellow catfish): 113654688
Entry
113654688         CDS       T08119                                 
Name
(RefSeq) replication protein A 32 kDa subunit-like isoform X1
  KO
K10739  replication factor A2
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030  DNA replication
tfd03420  Nucleotide excision repair
tfd03430  Mismatch repair
tfd03440  Homologous recombination
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113654688
   03420 Nucleotide excision repair
    113654688
   03430 Mismatch repair
    113654688
   03440 Homologous recombination
    113654688
   03460 Fanconi anemia pathway
    113654688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113654688
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113654688
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    113654688
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     113654688
   MMR (mismatch excision repair)
     113654688
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     113654688
SSDB
Motif
Pfam: RPA_C CofD
Other DBs
NCBI-GeneID: 113654688
NCBI-ProteinID: XP_027020756
LinkDB
Position
7:9650461..9655902
AA seq 241 aa
MGSQGNAYSSSPVGFSSSKNEIKPKTAGILRVMPCTVSQLLSAREHRDSFFIRDIELNQV
TVVGLIRRTKATLTHLVYSVDDMTGPPMDIKLWLNVEQDVNMNHCVIPSGTYIKAVGSLR
SFQHHRSMVAFNIRCLDDFNEITSHMLEVIQAHLDSESSSNSMINTSYASDPATIGFTAN
QKQVYTLIKRCPLAEGISMQCLRNSLKYLSSYDIRNCLQFLINEGHIFSTVDDYHFKCTN
G
NT seq 726 nt   +upstreamnt  +downstreamnt
atgggaagccaaggtaacgcgtatagctcttcaccagtcggattttcatcgtcgaaaaat
gaaattaagccaaagacagcagggatactacgtgtaatgccatgcactgtgtctcagctc
ctatcagccagagaacacagagactccttctttataagagacatagagctcaaccaggtg
actgtggtgggtttgatcagaaggaccaaagcgacgcttacacaccttgtgtattctgtg
gatgatatgaccggcccccctatggatatcaaactgtggctgaatgttgagcaggatgtc
aatatgaatcattgtgtcattccttctgggacatacatcaaagctgtgggaagcctacgc
tcctttcagcaccacagatccatggtagcgttcaacatccgctgtctggatgactttaat
gagatcacgtcacacatgctggaggttattcaggcccatctggatagcgaaagcagttca
aatagtatgataaacacatcatatgcaagtgacccagccaccattggtttcacagccaat
cagaagcaggtatatactttgattaagaggtgtcctttggcggagggcatcagtatgcag
tgcctgagaaattcgctcaaatatctctcctcctatgacatcaggaattgccttcagttt
cttataaacgaagggcacattttttccacagttgatgactaccatttcaagtgcactaat
ggctaa

KEGG   Tachysurus fulvidraco (yellow catfish): 113658991
Entry
113658991         CDS       T08119                                 
Symbol
rpa3
Name
(RefSeq) replication protein A 14 kDa subunit
  KO
K10740  replication factor A3
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030  DNA replication
tfd03420  Nucleotide excision repair
tfd03430  Mismatch repair
tfd03440  Homologous recombination
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113658991 (rpa3)
   03420 Nucleotide excision repair
    113658991 (rpa3)
   03430 Mismatch repair
    113658991 (rpa3)
   03440 Homologous recombination
    113658991 (rpa3)
   03460 Fanconi anemia pathway
    113658991 (rpa3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113658991 (rpa3)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113658991 (rpa3)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    113658991 (rpa3)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     113658991 (rpa3)
   MMR (mismatch excision repair)
     113658991 (rpa3)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     113658991 (rpa3)
SSDB
Motif
Pfam: Rep_fac-A_3
Other DBs
NCBI-GeneID: 113658991
NCBI-ProteinID: XP_027027324
LinkDB
Position
7:4928021..4930715
AA seq 122 aa
MTGVFESPKTRINVSMLPQHVSRPVSFVGRVEKVHQSGKSFTLMDGEGKIASVELSNPLE
EELSGIVEVVGMVSNKGTIMAAAYNMFRDEKGISFDLELYNEALKVIHDFPQYYPFEVSS
SG
NT seq 369 nt   +upstreamnt  +downstreamnt
atgacgggtgtgttcgagtctccaaaaacacgaataaacgtgtcgatgctccctcagcac
gtgagcaggccggtgagtttcgtaggacgcgtagaaaaggtccatcagagtgggaaatcg
ttcacgctgatggacggagagggaaagattgcatccgtggagctgagtaatccgctagaa
gaagagttgagtggaatagtggaagttgtcggcatggtgtcgaataaaggaaccatcatg
gctgcggcgtacaacatgttcagggacgaaaaaggaatttcattcgatttggagctgtat
aacgaggccctgaaagtcattcacgattttcctcagtattacccgttcgaggtgtcatcc
agtggataa

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