KEGG   Tachysurus fulvidraco (yellow catfish): 113643970
Entry
113643970         CDS       T08119                                 
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440  Homologous recombination
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    113643970 (top3a)
   03460 Fanconi anemia pathway
    113643970 (top3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113643970 (top3a)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113643970 (top3a)
Enzymes [BR:tfd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     113643970 (top3a)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Topoisomerases
   113643970 (top3a)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     113643970 (top3a)
   FA (Fanconi anemia) pathway
     113643970 (top3a)
SSDB
Motif
Pfam: Topoisom_bac Zn_ribbon_GRF Toprim Zn_ribbon_Top1 zf-C2H2_10 Zn_ribbon_GRF_2 Mtrc-MtrF_II-IV_dom T2SSF
Other DBs
NCBI-GeneID: 113643970
NCBI-ProteinID: XP_027004221
LinkDB
Position
24:complement(14093594..14103797)
AA seq 997 aa
MIIVGKLKSLLAAQGRICRSISFSMIRRTPIKKVLCVAEKNDAAKGISEIMSNGRSRRRE
GYSVYNKIYEYEYNLFGQNVSVCMTSVSGHLLSLEFKAPFQKWHSCNPVLLFDAEVEKYC
PENFVQIKRTLEREARQCQALIIWTDCDREGENIGFEIIDVCKAVKQNIQVFRARFSEIT
PTSIRRACETLTEPDINVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPESLSDQLISYG
SCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEDESVEFSWKRHRLFNHTACLVLYH
LCMEDPVARVMSVTSKPKNKWRPLPLDTVELEKLASRKLKISAKETMRVAEKLYTQGFIS
YPRTETNMFPKNLNLVPLVEQQTQDREWGAFARGILESGGPTPRNGNKSDQAHPPIHPTK
YTNNLQGNEKRVYEFIVRHFLACCSKDAQGQEVTVEIDIAEERFSASGLTIIARNYLDVY
PYDKWYNKVIPLYTPETTFQPTAVEMVEGQTSPPQLLTEADLISLMEKHGIGTDATHAEH
IETIKSRMYVGLTDDQRFLPGELGMGLVEGYNSMGYEMSKPHLRAELEADLKLVSEGRKD
KATVLRHHVTKYKTVFIESVRKAKKLDEALSNYLGQARDYTEQEEQELEMPLPVRKCPQC
SRDMVLKKKKDSTAKFLSCTGYPSCKAAVWFPDTVLEVSRDDSVCPSCHPHPVNMLRFKF
KRGSLPPGMPLEFVGCIGGCDETLREVLNLKYLRGGDSTTQVNRSSTTQQSNRPVNNPAL
QNRSENRPPLHSPPAWSTQLSRSVQNNVVCNCSQDALLLTVRKEGPNQGRQFYKCNTGNC
NFFLWDEQQNDQPGSAGRIGSTGQPSPSFQPPRPSLGFANTPQQKQGSRGSGGGGEESMC
SCNIPAVTRTVMKDGPNKGRVFLTCSKPRDQQCGFFQWVDENVAPAAVGNVRGNNNKWTA
SKKNEASSSRASAPKRPRTCGICHQPGHTRTNCPQAR
NT seq 2994 nt   +upstreamnt  +downstreamnt
atgatcattgtggggaagttaaagtctctattagcagcccagggtcgtatttgtcgctct
atatcctttagtatgatcagaagaactccgattaagaaagtgctttgtgtagctgaaaag
aacgatgcagctaaaggcatctcagagatcatgtcaaatggcaggtcaagaagaagagaa
ggttactcagtctacaacaagatatacgagtatgaatataatctttttggacaaaatgtt
tctgtgtgcatgacatctgtgtctggacaccttttaagtcttgaattcaaagctcctttt
cagaaatggcacagctgtaatccagtcttgctgtttgatgctgaagtggaaaagtattgt
cctgaaaactttgtgcaaattaagcggactttggagagagaggccagacagtgccaggct
ctgatcatctggactgattgtgatcgtgagggagaaaacattggcttcgagatcatcgac
gtctgcaaagctgtcaagcaaaacattcaggtgttccgtgctcgcttctctgagattact
cccacttccattaggagagcctgcgagactctgacagagccggacattaacgtcagcgat
gctgtggatgtcaggcaagagctggatctccgcatcggagcggcttttacgaggttccag
actttacggttgcaaaagatcttcccagaatctctatctgatcagctgatcagttacggg
agctgtcagtttcctaccttgggctttgtggtggagaggtttaaagctattcaagcgttc
atccctgaaaccttctttaaaattaaagtggtccatgagcctaacgaagacgaatcggtg
gaattcagctggaaaaggcatcgtctcttcaaccacacggcatgtctcgtgctttaccac
ttgtgcatggaggaccctgtagcaagagtgatgtctgtaacaagtaaaccaaaaaacaaa
tggcgtccattacccctcgacactgtggaacttgaaaaactggcttcaagaaaattgaag
ataagtgctaaagagaccatgagagtagccgagaaactgtacacacaagggtttatcagt
taccctcgtactgagaccaacatgttcccaaagaacctgaaccttgtcccgcttgttgag
cagcagactcaggacagggaatggggggcttttgctcgaggcattttagaaagcggtggg
ccaacacctcgaaacggaaacaaatccgaccaggcccatcctcccattcaccctaccaag
tacacaaataatcttcagggaaacgagaaacgtgtgtacgagttcatcgttcgtcacttt
ctggcctgttgctccaaggatgctcagggccaggaggtgactgtagaaattgacattgct
gaggagagattttctgcaagcggactgacgattatcgctcgtaactatctcgacgtttac
ccctacgacaagtggtacaacaaggttattccgttatatacacctgaaacaacatttcaa
ccgaccgctgtcgagatggtggaaggacagacgagtccacctcaactcctcactgaggcc
gacttgatttctctcatggagaagcatggcatcggcacagacgcaacacacgccgaacac
atcgagaccatcaagagccgtatgtacgtcggtctgacggatgatcagaggttccttcct
ggggagcttggcatgggtctcgtcgaagggtacaattccatgggctatgaaatgtctaag
ccacatttgagggcagagctggaggcagacctgaagctcgtgtctgaagggagaaaggac
aaggcaactgtcctcagacatcatgtaacgaaatacaagacagtttttatagaatcagtc
aggaaggcgaagaagttggatgaggctctgtctaattatttaggccaggcccgagattac
acagagcaagaagaacaggagttagagatgccgctcccggtgcgtaaatgtccgcagtgc
agccgagacatggttttgaagaagaagaaggacagcacagcgaagtttctgtcatgcaca
ggctacccgagctgtaaggcagctgtgtggtttccagataccgttctggaggtcagcaga
gatgacagtgtctgtccatcgtgtcacccacatcctgtcaacatgctgaggttcaagttc
aagaggggaagtctacctccagggatgcctctggagtttgtcgggtgtatcggtggctgc
gatgagactctgagagaggtcttaaatttaaagtatcttcgaggaggagattccaccact
caggttaatcgcagttcaacaacacagcaatcgaatcgtccagtaaacaatcctgcgctt
cagaacaggtctgagaacagaccaccactccacagtccaccggcctggtccacacagctc
tcacggtctgtccagaacaatgttgtttgtaactgtagccaggatgctcttctcctcacg
gtgcgtaaagaaggtcccaaccaaggtcgtcaattctacaagtgcaatacggggaattgt
aacttcttcctgtgggacgaacagcagaacgaccagcctgggtcagcaggaaggatcggg
tcaacgggacaaccgagccctagctttcaaccacccagaccttctcttggctttgcaaat
acacctcagcagaagcagggcagcagaggatctgggggaggtggagaagagagtatgtgc
agctgtaacatacctgcagtcacaaggaccgtcatgaaagatggacctaacaaaggcaga
gtgttcctcacctgcagcaaaccacgagatcagcaatgtggcttctttcagtgggtagat
gagaacgttgctcccgctgctgtagggaatgtaagaggaaacaacaataaatggactgct
agtaagaagaacgaagcctcttcaagcagagcttctgctcctaaaagaccaaggacttgt
ggtatttgccatcagccgggacacacgcgcaccaactgtcctcaggcccggtga

KEGG   Tachysurus fulvidraco (yellow catfish): 113653296
Entry
113653296         CDS       T08119                                 
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440  Homologous recombination
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    113653296 (top3b)
   03460 Fanconi anemia pathway
    113653296 (top3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113653296 (top3b)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113653296 (top3b)
Enzymes [BR:tfd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     113653296 (top3b)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Topoisomerases
   113653296 (top3b)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     113653296 (top3b)
   FA (Fanconi anemia) pathway
     113653296 (top3b)
SSDB
Motif
Pfam: Topoisom_bac Zn_ribbon_TOP3B Toprim
Other DBs
NCBI-GeneID: 113653296
NCBI-ProteinID: XP_027018609
LinkDB
Position
9:complement(4552331..4567646)
AA seq 861 aa
MKTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYTGSFVGQNVRFKMTSVCGH
VMSLDFTGKYNNWDKVDPAELFSKAPTEKKEANPKLSMVKFLQVEAKGCDYVVLWLDCDK
EGENICFEVLDAILPVMNKPYSNERTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKDSPITLDWDRVRVFDREIGQMFVNMSKSAREALVESVSKKEKAKQRPLA
LNTVEMLRVASSALGMGPQHTMQVAERLYTQGYISYPRTETTHYPENFDLKATLRQQANN
SYWSETVRALLAEGINRPRKGADAGDHPPITPMRAATEAELGSDGWRLYEYITRHFIATV
SHDCKYLQTTIAFQISTEGFTCTGKTLLSPGFTEVMPWQGIPLEEALPSCEKGDTFTVDE
IKLLEKQTSPPDYLTESELITLMEKHGIGTDASIPVHINNICQRNYVTVENGRKLKPTNL
GIVLVHGYYKIDAELVLPTIRSAVEKQLTLIALGKANFLQVLQHTLDIFKRKFHYFVDSI
AGMDELMEVSFSPIAASGKPFSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGSRGKSYPLCPYCFGNPPFRDMKKGMGCNECTHPSCPHSLNS
LGIGQCVECETGVLVFDPNSGPKWRMACNKCSVVVHFFEQAHKVQVSQESCESCDASLVM
VDFHKARSPLADGETQHTGCVFCDPIFQDFVELKHATMRHPMHRGGGARRGRGRGRGRRP
GGRGNPKKPKDKMAALAAYFV
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgaagacagtgctgatggtggctgaaaagccctctctggctcagtccatcgccaaaatc
ctctctaaaggcagctgttcgagccgtaaaggtctgaacggagcatgctcggtgcacgag
tacacgggatccttcgtgggccaaaacgtgcgctttaagatgacatcggtttgcggtcac
gtcatgagtctggatttcacagggaaatacaataactgggataaagtggatcctgctgag
ctcttcagtaaagcaccgactgagaagaaagaagccaaccctaaactcagcatggtcaaa
tttctacaggttgaagctaaaggttgtgactatgttgtgttgtggctggattgtgataaa
gaaggagagaacatctgttttgaggtcttggatgccatcctgccggtgatgaataagcct
tacagtaacgagcgcactgtgtaccgagccaagttcagctccatcacagacacagacatc
tgtaatgctatgaaccggctgggagaacccaataagaacgaggctctgtctgtggacgcg
cggcaggaactggaccttcggatcggctgtgctttcacacgattccaaacaaaatatttc
cagggaaaatacgggaacctggactcctccctgatctccttcggtccatgccagacgccg
acgctgggcttctgtgtggagcgtcatgacaagatccagtcctttaaacccgagacctac
tgggtcatccaggccaaggtgtttaaaggcaaggacagtccgatcactttggattgggat
cgcgttcgggtgtttgaccgagaaatcggacagatgttcgtcaacatgtcaaagtccgca
agagaagctctggttgagtcggtcagtaagaaagagaaagccaagcagagacctctggcc
ttgaacacagtggagatgttaagagtggctagttctgctttggggatgggtcctcagcac
accatgcaggtagccgagcgcttgtacacacagggctatatcagctaccctcgaactgag
accacccactaccctgagaactttgacctcaaggcgacactaaggcagcaggccaacaac
tcttactggtctgagacggtgagagctcttcttgctgagggcattaaccgacctaggaaa
ggtgcggatgcaggagatcatcctcccatcaccccgatgagagctgctaccgaggccgag
ctgggcagtgatgggtggcgtttgtacgagtacatcacacgtcacttcatagccacagtc
agtcatgattgcaagtatctgcagactactatcgctttccagatcagtactgagggattc
acctgcaccggcaaaacgcttctatcaccaggttttacagaggtgatgccatggcagggt
attcctctcgaggaggctttaccatcctgtgagaaaggagacacatttacagtcgatgag
attaaactgctggagaagcagacgagcccgcccgactacctaaccgagtctgagctcatc
acacttatggagaaacacggcatcggtactgatgctagtatacctgttcatatcaataac
atctgtcagaggaattacgtcaccgtggagaacggacgcaaactcaaacccaccaatctg
ggaatcgtcctggttcacggctactacaagatagatgcggagttggtcttgcccactatc
cgcagtgcagtagagaagcaactgactcttattgctctgggcaaagcgaacttcctccag
gtcttgcagcacacactagacatcttcaaaaggaagttccactactttgtcgattccatc
gcaggtatggacgagttgatggaggtgtccttctcgcccatcgctgcttcaggaaagccg
ttctcacgctgcgggaagtgtcaccgcttcatgaagtatattcaggccaagccgagccgt
ctgcactgttcacactgtgatgagacgtacagtctgccccagaatggagccatcaaactc
tacaaggagctcaggtgtcctctggacgagttcgagctggtgctgtggacatcagggtcc
cgtgggaagagctaccctctgtgtccctactgcttcggcaaccctcccttcagagacatg
aagaaaggtatgggctgtaacgagtgcacccacccttcctgtccacactctctcaactcg
ctcggcatcggtcagtgtgtggagtgtgagacaggcgtgcttgtcttcgacccaaactct
ggccctaaatggcgcatggcttgcaacaaatgcagtgtggtggtacatttcttcgagcag
gcccataaggtacaggtttctcaggagagctgcgagtcatgtgatgcttctctggttatg
gtagacttccataaagcacgctcgcctctagccgacggagagacgcaacacaccggctgt
gttttttgcgatcccattttccaggattttgtggagctcaagcatgcaaccatgcggcat
cctatgcacagaggaggcggggctcggaggggaagggggaggggcagagggaggaggcct
ggaggacggggcaatcctaaaaaacccaaagacaaaatggctgccctggctgcatacttt
gtataa

DBGET integrated database retrieval system