Tachysurus fulvidraco (yellow catfish): 113644367
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Entry
113644367 CDS
T08119
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04518
Integrin signaling
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113644367
04518 Integrin signaling
113644367
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113644367
09142 Cell motility
04820 Cytoskeleton in muscle cells
113644367
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tfd04147
]
113644367
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113644367
Exosome [BR:
tfd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113644367
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113644367
Hyaluronan
Extracellular matrix or blood plasma proteins
113644367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
vWA_SIBA-E
Sec8_N
DUF2064
Uteroglobin
Motif
Other DBs
NCBI-GeneID:
113644367
NCBI-ProteinID:
XP_027004951
LinkDB
All DBs
Position
3:12526390..12553104
Genome browser
AA seq
2708 aa
AA seq
DB search
MAAMKGLLPLFILAPGFFVISAQKTVCTQEALADIIFLVDGSWSIGAENFQKIRDFLLSL
VNSFDVSPNHVQIGLVQYSDTLHTEFHLNSFETKQKILDYITNFPYRGGGTKTGLGLNFL
LKQHFVKEAGSRAKDGVPQIAVVITDGQSQDDVEPHAQDLKHQGIILYAIGIKDADMEQL
KEIATKPHEQHIYSVSDFLALQGISQSFVQVLCTTVEEATRQVSQVPLGCKASLADIVFL
VDSSGSIGDADFLKVKKFLHTFIVDLAINPNKVRVGLAQFSNEPHPEFLLGKYADKNDLL
EKVDKLNYLKGGTETGKALRFILDNYFTKAGGSRINENVPQIAVVITDGDSADETKTPAM
ELRRKGVLIFTIGVGEASITDLQSIANKPHQRFILSFTDYEELLKATTSTIGKVCISMEA
QKQALAPTSSDVFVLVDSSIDQTQKVIQFLNRLANLLNVGSTFNQMALAQFSEDISVEFR
FDAYKTKNEALALIRKFRLKGTGQRKLGKAMDYVRTHLLKTEAGSRIAEGNKQYLLVISK
GQSDDNILRAVRALKDEEVKIINVDFSKELTLVDLGQGGPRAHGPPLQGEPGLRGVPYVP
YARSKNSTEITQDVKIILETKETFQVTGDCKSAPLADIVFIVDVSDSITVSNFRLVRNFL
HRMINGLEIGSDSVRVGMVLYSDTPTAEFYLNTFENKEEILQYIKLLQFRGGQSITSKAL
KFAREKLFTKDTGSRHALGVQQIAVVITEGDSLDNVTFQAAELRRNGVQVYALGVTKDNV
ERLKEIASYPPDRFVFSVESFAMLNTMERILRKTLCNNVVRSAVDKSVRYTLKQGCIQTE
EADIYFLIDHSGSIYPSDFKDMKKFILEFLLMFTIGPKQVRVGVVKFASNPTLEFKLNEH
NDRVFLERAVDSILQIGGGTQTGKALSFMSPLFKEAEKTRGTKVQEILIVITDGKSQDKV
KEPAAQLRAQGVTIYAIGVKDANEQELLEMAADPKRMYFVTNFDALKPLKNEIVTDICSD
EACKNMLADVIFLVDGSGSIDPEDFSKMKKFMNSIISKTVIGKDSVQVGVVQFSSQPNAE
FALNEIYDKSEMQQAINDMPQLGGGTMTGHALHFVSQYFDLSEGGRPSTPQILIVITDGE
SQDIVAQPAQALRDKGITIYSIGVLNANSTQLREISGTLENVYLERDFDALDFLDKDLLL
KICTSVDECQKSQVADVVFLVDDSSSISDDSFMSMKYFMNSVVNSTQVGKDSVRFCTILY
SDGAEAKFSLNQYYSKREVRDAINNLKHSGGSTYTAKALLYSLPYFSEASGGRGAKGVPQ
MMFVITDGEATDDDDLTTASNELHNYGVSVYGIGVDQAKTTELEIITKDKNKVFKVDDFE
ALKALQQNISSVICNNTKPECEKAAADLVILIDGSESIKEVPWKTMINFMLSLIDNLRIK
QDLFRVGVAQFSSNYRKEFYLNEYDNELGVKRAIQDITQMKEGTRIGAALNSVQEFFQNS
KGSRIQEGISQNLLLITDGESNDDVSDAADKLRDKGIQMFVIGIGDISVQQLNYIAGSHE
RVFYVDNFDHLKLNRTTLQVINSICAPIPKQEEECTVDIGIGFDISRRRSHSLFSSQYKL
QIYLPEIIRYISTVQNLCCLPQVPSLQTNIGFRLVSSDGRILYDPNFEQYNEETVKKLME
LYTTQDLAFNSQLLRMFQDKFAASRAGVKVVIIFTDGLDVPLDVLMVASENLRKSGVNAL
MTVALEGVKSTTDLQKLEYGRGFGYNEPLMIGMQNVAGALQMQINDVASRECCNVMCKCN
GHEGMRGPQGLPGTKGSRGRNGHPGFPGEEGGYGERGPQGLNGTQGHLGCHGKRGQKGSR
GYRGDTGEDGENGLDGVDGEHGATGSSGYPGEPGDPGSPGKKGVQGIPGVPGQKGLRGDP
GESGIDNSIRGPRGEIGYAGLPGDPGPDGIPGRTGDTGSPGQNGRRGTAGEKGFTGPKGE
IGSKGTPGPSGAQGPAGPSGTPGQKGILGFPGPQGPHGAQGIIGSKGNVGHRGQKGQPGD
PGITGEPGPPGPRGPPGNDGSDGYGLPGPKGQKGDPGFPGYPGFQGENGNIGHRGDNGPK
GQRGRAGNAGRPGAPGNPGDVGPAGHRGPKGQSGTRAMSTCQLISYVRDNCVCCKDKATC
PVYPTELVIGLDMSEDMTPALFGRMRSTLLSLLDSIDISESNCPTGTRVAVVSYNSNTKF
LIRFSDYRHKKDLVEAVKNIPLERTSNRRNIGAAMRFVGRNVFKRVRQGVLIRKVAIFLS
GGQSQDVTSIITAVLEYKALDINLGVIGFRETPNVQRAFQADETGSFINVLERSQTQSTA
LEKIQRCIICFDPCNPASDCPSTNEMPTPEQVNMDMALLVDGSRSIQADQYEGVKQVLGT
VLDQFVVSDQPSKADRQARVALYQQSSSYSEAQASVKQIFNFQQFHDRNQMKQIIFENLQ
QTGGYSRLGHAIEHVIMQGLLTVSRPRKNKMLLLIVGGETEYSDREKLDFISRMARCQGV
VLFTLTVGDHCNSTQVEELASIPTEQHIVHLGHVKQEQEYTRRFIRTFLHILKLEMNTYP
APLLKQQCEQLQQQQGQVHVFEAAKRPPIHRFSLENEEVISYSEERGTQYETEHVNGSLL
TSGPKYSHNVCFLKKDTGPCTKYVLKWFYDLEQNQCSQFWYGGCEGNLNRFDSQNDCEAR
CVYLLTVH
NT seq
8127 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaatgaaaggactgctgcctctctttattttagcaccaggtttctttgtgatc
agtgcacagaaaacagtatgcacacaggaagcattagcagatatcatcttccttgtggat
ggttcttggagtattggtgcagagaacttccaaaagattcgtgatttcctcctcagtttg
gtgaatagctttgatgtaagtcccaaccatgttcagattggcctagtgcagtacagtgat
acactgcacactgaattccatcttaacagctttgaaaccaagcagaagattcttgactac
atcacaaattttccatatcgaggaggtggcaccaagactggactagggttaaacttctta
ctaaagcagcactttgtgaaagaagcaggaagtcgtgctaaagatggggtgcctcaaatt
gctgttgttatcacagatggacagtcacaggacgatgtggagccacatgcacaggacctg
aagcaccagggaatcatactttatgccattggaattaaagatgctgatatggagcagctg
aaggaaattgccactaagccacatgaacagcacatctatagtgtgtctgattttttagct
ttgcaaggaatctcccagagttttgtccaggtgctttgtacaacagtggaggaagctaca
cgtcaagtatctcaggtgccactaggatgcaaagctagtttggctgacattgtgttcctt
gtggatagctctggtagcattggtgatgcagacttcctgaaggtgaagaagttccttcac
acattcatagtggatctcgctattaatcccaataaagtcagagtaggactggcacagttt
agtaatgaacctcatccagagttcctgttggggaaatatgctgataagaatgacctgctg
gagaaggtagacaaactcaactacctaaaaggaggcactgaaaccggaaaagctctgcgc
tttattctagataattacttcaccaaagcaggtggcagtcgcatcaatgagaatgtgcct
cagattgctgtggtgatcacagatggtgactcagctgatgagacaaaaactccagctatg
gagctacgtagaaagggggtgttaatcttcaccattggggttggtgaagccagcattaca
gacctgcagtctattgctaataaaccacatcagcgttttatactgagtttcactgactac
gaagagctgctgaaagcaaccaccagcacaataggcaaagtgtgcatttctatggaggcc
cagaaacaagctctagctccaacgtcttcagatgtgtttgtgttggtggacagctcaatt
gatcagacccaaaaggtgatacagtttctcaatcgcctagccaatctacttaatgtgggg
agtacattcaatcaaatggctttggctcagtttagtgaagatatttcggtggaatttcgt
tttgatgcttacaaaactaaaaatgaagcacttgcactcatccgcaaattccgactaaaa
ggaactggacagcgcaaacttggaaaagcgatggattacgtgcgcactcacctcctcaag
actgaagcaggaagtcgaatcgctgaaggaaataagcagtacctgctggtgataagcaaa
ggacaatctgatgacaatatactgagagcagttcgtgcattaaaggatgaggaagtgaaa
attatcaatgttgacttcagcaaagaactaaccctggtggacctaggtcaaggtggacct
agagcacatggacctcctctacagggtgaacctggcttacgtggtgttccttatgttcct
tacgcgagaagtaaaaacagcacagaaataacacaagatgtaaagattatccttgaaact
aaggaaacattccaagtaactggagactgcaaatcagctcctctggctgatatagtgttt
attgtggatgtgtcagacagcatcactgtttcaaacttcaggctggttcgtaactttctc
caccggatgattaatggcttggagattggctctgacagtgtgcgagtaggaatggtgctg
tacagtgatacacccacagctgaattctacctaaacacttttgaaaacaaagaggagatc
ctgcagtacattaaacttttacaatttaggggcgggcaatccattaccagcaaggctcta
aagtttgcaagagagaaactcttcaccaaggacacgggaagccgacatgctttaggagtg
cagcagattgctgtggtcataactgagggagactcactggataatgtcacatttcaggct
gcggaactaaggcgcaatggggtccaggtctatgccttgggagtcacaaaagataatgtg
gaacgcctgaaagagatagcatcttatcctcctgataggtttgtgtttagtgtagagagc
tttgctatgcttaatacaatggaaagaatattgaggaaaactctgtgcaacaatgttgtc
cgttcagcagttgacaagtctgtcagatacactttaaagcaaggatgtatccagacagaa
gaagcagacatctatttccttattgaccattctgggagtatttatccatcagattttaag
gacatgaaaaaattcattcttgagtttctgctcatgtttactattggcccaaaacaggtg
cgtgtgggtgtggtgaaatttgcaagtaaccctacactggagtttaaactgaatgagcat
aatgacagagtctttcttgaacgagctgtggacagcattcttcagataggtggaggcaca
cagacaggaaaggctttgtctttcatgagcccactttttaaggaggctgaaaagactcgt
ggaactaaggttcaagagattctcattgtcattactgatggaaagtcccaagacaaagtg
aaagagccagcagcacagctgagagcacaaggggtgaccatatatgccattggagtgaaa
gatgcaaatgagcaggagctcctggagatggcagctgacccaaagaggatgtactttgtt
actaactttgatgcactgaaacccctgaagaatgaaattgtcactgatatttgttcagat
gaggcctgcaagaacatgttggcagatgtcatctttttggttgatggttcaggaagcatt
gaccctgaggacttctcaaaaatgaagaaattcatgaattcaatcatttccaagacagta
attggcaaggatagtgtacaggtcggagtggtgcagttcagctcacaaccaaatgctgaa
tttgcccttaacgaaatttatgacaaatctgaaatgcagcaggccattaacgatatgccg
cagttgggcggtggcactatgactgggcatgcactccattttgtgtcacagtactttgat
ttatcagaagggggtcgtcccagcactccacagatccttattgtgatcacagatggtgaa
tctcaggatatcgttgctcagcctgcacaagctcttagagacaagggcattacaatatac
tctataggagtacttaatgctaacagcacacaactgcgagagatcagcggaactctggaa
aatgtttatctggaaagagattttgacgcattggacttcttagataaagatctcttgctt
aagatatgcacttctgttgatgaatgtcagaaatcgcaagtagcagatgtcgtcttctta
gtggatgactccagcagtattagcgatgatagctttatgagtatgaagtactttatgaac
tcagtggtgaactccacacaggttggaaaagacagtgtccgtttttgtactattctctac
tctgatggagcagaggccaaattttcccttaatcagtactacagtaaacgggaagtacgg
gacgctataaataatctaaaacatagtggtgggagcacatacacggccaaagcactcctt
tactcactgccctactttagtgaagccagtggtgggagaggtgcaaaaggtgtcccacaa
atgatgttcgtcatcacagatggtgaggccacagacgacgatgatttaaccacagcttct
aatgaacttcacaactatggtgttagtgtttatggtattggagtggatcaagcaaaaaca
actgagctagaaatcataactaaagacaaaaacaaggtcttcaaggttgatgactttgaa
gcgttgaaggcccttcaacaaaacatttccagtgtgatctgcaacaacacaaaaccagag
tgtgagaaagcggcagctgacttggtcattttgattgatgggtctgaaagcattaaagag
gtgccttggaagaccatgatcaattttatgcttagcctcattgacaatcttcgcatcaag
caagatctctttagagttggtgtagctcagtttagttcaaactacaggaaagaattttac
ttaaatgaatatgataatgaactgggtgtgaagagggccattcaggacatcactcaaatg
aaagaaggaacacgcattggagctgctctgaatagtgtgcaagagttcttccagaacagt
aaagggagccgcattcaagaaggaatttcacaaaacctgctgttgatcactgatggagaa
tcaaatgatgatgttagcgatgcagctgataaattgagggataagggtattcagatgttt
gtgattggaataggagacatctcagtccaacagctcaactacattgctgggtcacatgaa
agggttttttatgtggacaattttgaccatctcaaattaaacagaacaacactgcaggtg
atcaatagcatttgcgctccaatccccaaacaagaagaagagtgcactgtagatattgga
attggattcgatatatcccgtagaagatcacattcactatttagcagccagtataagcta
cagatctacctgccggagattatcagatatatctccactgtgcaaaacttatgctgttta
ccccaggtaccttctcttcaaaccaacattggtttccgtttggtttctagcgatggcagg
atactgtatgaccctaattttgaacaatacaacgaagaaacagtgaagaaactgatggaa
ctttacacaactcaagatctggcttttaacagccagcttctgcgcatgtttcaggataag
tttgcagcctccagagctggtgtaaaagtagtgattattttcactgatggcttggatgta
ccccttgatgtcctcatggttgcctcagagaatctcaggaaaagtggagtcaatgcactg
atgacagtagcactggaaggagtcaaaagcaccacagacctacagaagctggagtatgga
cgaggatttggctacaatgagcctcttatgattggcatgcaaaatgtggccggtgctttg
cagatgcagattaatgatgtggcctcacgagagtgctgtaatgtgatgtgtaaatgtaat
ggtcatgaagggatgcgtggaccacaaggactcccagggacaaagggctcacgtggacga
aatggacatcctggatttcctggagaagaaggaggatatggtgagagagggcctcaaggt
ctgaacggaactcaaggacatttaggctgccatgggaaaagaggtcaaaagggcagcaga
ggctacaggggtgatacaggtgaagatggagaaaacggtttggatggagtagatggagaa
catggtgcgactggatcatcaggatacccaggagagccaggggatcctggcagcccaggc
aagaagggtgtccaaggaattccaggtgttccaggacaaaaaggactcagaggtgatccg
ggtgagtcaggcattgacaacagtatccgtggtcctaggggtgagattggatatgctggc
ctaccgggagatccaggaccagatggaatccctggcaggactggagatactggtagtcct
ggtcaaaatggaagaagaggaactgcaggtgaaaaaggtttcactggccctaaaggcgaa
ataggatcaaaaggaacccccggaccttcaggggcacaggggccggcaggtccttctgga
actccaggacagaaaggaatacttggttttccaggaccccagggaccacatggtgcacaa
ggaatcataggatctaaaggaaatgtaggacacaggggacaaaagggtcagccaggagat
cctggaattacaggagaacctgggccaccaggccccaggggccctccaggaaatgatggt
tcagatggatatgggttaccaggaccaaaaggacaaaagggagaccctggttttccagga
tatcctggatttcagggtgaaaatggaaatattgggcacagaggagataatggtcctaag
ggccaaagaggaagagcgggaaatgcaggcaggccaggagcaccgggcaatcctggtgat
gttggaccagctggacacaggggccctaaaggacaatcaggaaccagagcaatgtctact
tgtcaactgatcagctatgtacgagacaactgtgtctgctgtaaagataaagcaacttgc
cctgtctaccccacggaactggtgattggtttggacatgtctgaggacatgactcctgcg
ttatttgggagaatgcgctcaactcttctttctctgctggacagcattgatatctctgaa
agcaactgtcccacagggacacgagtggctgtggtctcttacaattcaaacaccaagttc
ctcattcgtttttctgactatcgccataagaaggatttagtggaagctgtgaagaacatc
cctctggaacgtacatccaacagacgcaacattggtgcagccatgcgctttgtgggtaga
aatgtctttaaacgtgttcgccagggggttctgatcaggaaggtggcgattttcctctct
ggtggacaatcccaggatgtgacatctataattacggctgttctggaatacaaggctctg
gatataaaccttggtgttattggtttcagggaaactcctaatgttcagcgtgcttttcag
gctgatgagacaggaagctttattaatgtgctggagagatcacagacccagagtacagca
cttgagaagatccagcgatgcatcatctgctttgatccttgcaatccagctagtgattgt
cccagcaccaacgagatgcccactccagagcaggtaaacatggacatggcgttgttggtg
gatggttctcggagcatccaggcggatcagtatgagggagtaaagcaggtgttgggcacc
gtgttggaccagtttgtagtgagtgatcagcccagcaaagctgacagacaggcacgggtg
gcgctttaccagcagagctcatcatacagtgaggcccaggcttcagtcaagcaaatattt
aattttcagcagttccatgaccgcaaccagatgaagcagatcatctttgaaaatttacag
cagactggtggatactccaggctgggtcatgccatagaacacgtaatcatgcagggcctc
cttactgtttccaggcctcgaaaaaacaagatgttgctgcttatagttggaggagagaca
gaatactcggatagagaaaaactggactttatctccaggatggcaaggtgtcagggtgtg
gtgcttttcactcttacagttggggatcattgcaacagcacacaggtggaggagcttgcc
agcattcccacagagcagcacatagttcacttgggccatgtaaagcaagaacaggaatac
actcgacgctttataaggactttcctacacattctgaaactggaaatgaacacctaccct
gctccattgctcaaacaacagtgtgagcaacttcagcaacagcaaggtcaagttcatgtc
tttgaggctgctaagagaccacccatacacagattttcactcgaaaatgaagaagtcata
tcgtacagcgaagagagaggtacacagtatgagactgaacatgtgaatggaagcctgctg
acctcagggcctaaatactcacataatgtgtgcttcctgaaaaaagacactgggccctgc
acaaaatatgtcctcaaatggttctatgatctggagcagaatcagtgctctcagttctgg
tatggaggatgtgaagggaaccttaacagatttgacagtcaaaatgactgtgaagctcgt
tgtgtatatcttcttacagtacattga
DBGET
integrated database retrieval system
