Tachysurus fulvidraco (yellow catfish): 113651174
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Entry
113651174 CDS
T08119
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tfd04040
]
113651174 (scn1lab)
Ion channels [BR:
tfd04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
113651174 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Spem1
IQ
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
113651174
NCBI-ProteinID:
XP_027015707
LinkDB
All DBs
Position
5:complement(31312850..31354694)
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AA seq
2009 aa
AA seq
DB search
MAAQLLVPPGPDSFQPFRPESLAAIERRIAEEAQRSKSERRSDEDDENGPKPNSDLEAGK
SLPFIYGEIPPGLVSVPLEDLDPYYSNQTTFIVLNRGKAIFRFNATPALYFLSPFNPLRR
ISIKVLVHSMFSFVIMCTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRFPQWNDTQNSTENNLTSAFN
STGFDLLKITNTFNWTEYINDKYNYYYLPSRRDALLCGNGSDAGQCPEGFVCIKAGRNPD
YGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLIL
AVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQQVAAAAATESGEYSGRGVLS
EESSSGGSRLSSKSAKERRNRRKKRKQREEEEEEEKADQEKFHKSESEDSIRRSGFRFSI
DANRLSYEKKCSTPNQSLLSIRGSIFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTF
EDSDSRRGSLFVPRRIERRNSTLSQCSLAAPRIVLPANGKMHCTVDCNGVVSLVGGASVP
TSPIGRLLPEGTTTESEVCKKRSGSHQASDYLDDAAARKRAMSVASILTNTMEELEESRQ
KCPPCWYKFANSFLIWDCCPQWLKVKEIVNMVVMDPFVDLAITICIVLNTLFMAMEHYPM
TKEFNDVLSVGNLVFTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLANV
EGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLF
GKSYRDCVCKISENCKLPRWHMVDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVF
MMVMVIGNLVVLNLFLALLLSSFSADNLASTDDDSEMNNLQVAVGRIQKGIAFVKSTLRQ
FLQSLFLAGSKPGALDEEKPLDDLHSDGKENCLANHAPVAVDVGKDFLKEPCVTPSNGVE
SHGKYGIEEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSESSDVEGSKEKLPVET
VLLSSSEGSTVDIRPPGEGAESVELEPEESLDPEDCFTEGCVMRFQCCQVDVEKGRWRSW
WTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYVEQRKTVKTVLEYADKVFTYVFI
LEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVATALGYSELSAIKSLRTLRALRPL
RALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCINSTTDEL
LPLDVVNNKSECLALVNDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRN
QEEQPFYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKK
YYNAMKKLGSKKPQKPIPRPANKIQGIIFDLITKQAFDIIIMILICLNMVTMMVETDDQT
KDMDNILYWINLVFIVLFTGECVLKMFSLRHYYFTIGWNVFDFVVVILSIVGMFLSEVIE
KYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAI
FGMSNFAYVKHEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKREPDCDSETE
HPGSSYRGDCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFE
MFYEVWERFDPNATQFVEYDKLSDFADALDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLD
ILFAFTLRVLGEEGEMDALRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIIIQRAF
RRYRIRITVKKASDMYRKRLQIGSEPLPEKEVLVIGKFPENSASDKTDMTPSSASPPSYN
SVAKSEKDKYEKERREKENNAKDTRERKK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccagctgctcgttcctcccggacctgacagcttccagcccttcaggccagaa
tcgctcgctgctatcgagcggcgcatcgctgaggaagcccagaggtccaaaagcgagagg
cggagcgatgaagatgacgagaacggacccaagcccaacagtgacctggaggcagggaaa
tccctgcccttcatctacggggaaatccctcctggactggtgtccgtaccgctggaggac
ttggacccttactacagcaaccagacaacctttatagtattgaatcgtgggaaggcgata
ttccgtttcaatgccacgcctgccctctactttctgagtccgttcaaccctctgaggagg
atctccattaaagttctggtgcattcgatgttcagttttgtgatcatgtgcaccatactg
actaactgcgccttcatgacacttagcaaccctccagactgggccaagaatgtggagtac
acgttcacagggatttacacgttcgagtctctgattaagatcttggctcgtggcttctgc
gtgggaaagttcacttttctgcgagacccctggaactggctggacttcagcgtcatcgtc
atggcatatgtaactgaatttgtggatctgggcaatgtctctgcactgagaaccttcagg
gttctgcgagcactcaaaactatttcagtgatcccaggcctgaagaccattgtgggtgct
ttgatccagtcagtaaagaagctgtcggatgtaatgatcctgaccgtcttctgcctgagc
gtgtttgcgctgatcggcctgcagctgttcatgggaaacctgcgtcagaagtgtgtgagg
tttcctcagtggaacgacacgcagaactctaccgagaacaacctcacctcggcgttcaac
agcacaggcttcgatttgctcaagatcaccaacacgttcaactggaccgagtacatcaat
gacaagtataattattattatcttcccagccgcagagatgccttgctgtgtggaaatggc
agtgatgcagggcagtgtcctgaaggatttgtgtgtataaaggcagggcgtaaccccgat
tacggctacacgagcttcgacacgttcagctgggccttcctttccctctttcgtctcatg
acacaggactactgggagaatctctatcagcagaccctgcgtgctgctggaaagccctac
atgatcttctttgtgctggtgatctttctgggttcgttctacctggtgaacttgatcctg
gctgtagtggccatggcgtatgatgagcagaaccaggccaccatcgaggaggcgcagcag
aaagaggaggagtttcaggccatgctggagcagctgaagagacagcaggaggaggcgcag
caggttgccgcggcagcagcgacagagagtggcgagtacagcggcaggggtgtcctgtct
gaggagagctcctccgggggctccagactgtcctcgaagagcgccaaggagcgacgcaac
aggcgcaagaagaggaaacagagggaggaggaggaagaagaggagaaagccgaccaggag
aagtttcacaaatccgagtcagaagacagcatccgccgctcgggctttcgcttctctata
gatgccaacaggctgtcctacgagaagaagtgctccacaccgaatcagtctcttctcagc
atacgtggatcgatcttctctccgaggaggaacagccgagcgagtttgtttagtttccgc
ggccgagctcgggactttggctcggagaacgattttgcagatgatgagcacagcacgttt
gaggacagcgacagcagacgaggctcgctcttcgtacctcggcggatcgagaggaggaac
tcgacgctcagtcagtgtagcctcgccgctccacggatcgtgcttccggcaaacgggaaa
atgcactgtactgttgactgtaacggggtggtgtcattggtgggcggagcctctgtgccg
acttcaccgattggccgattgcttcccgagggaacgaccactgagtcagaggtctgtaag
aagaggtctgggtcacaccaagcttctgattacctggatgacgctgcagctaggaaaaga
gctatgagtgtagccagtattctcacaaacactatggaggagctggaggagtcgaggcag
aagtgccccccctgctggtacaaatttgccaacagcttcctgatctgggactgctgcccc
cagtggctgaaagtgaaggagatcgtcaacatggtggtcatggatccgttcgtagatctg
gccatcaccatctgcatcgtcctcaacaccctcttcatggccatggagcactaccccatg
actaaggagttcaacgatgtgctgtcggtcggaaacctggtattcacagggatctttaca
gctgagatgtgtctaaaggtcatcgccctggacccctactactacttccaggagggctgg
aacatctttgatggcatcatcgtgagtttaagcctgatggagctgggcctggcgaatgtg
gaggggctttctgtgctcagatcattccgactgctgcgagtgttcaagctggccaagtca
tggcccactctgaatatgctgatcaagatcattgggaactcagtaggtgctctgggcaac
ctgaccttagtcctggccatcatcgtcttcatcttcgccgtggtgggaatgcagctgttc
gggaaaagttaccgcgactgtgtgtgcaagatttcagagaactgcaagctgccacgttgg
cacatggtggacttcttccactcgttcctcatcgtgttccgggtgctgtgtggcgagtgg
atcgagaccatgtgggactgcatggaggtggcgggccagaccatgtgcctcatcgtcttc
atgatggtcatggtgatcgggaacttggtggtgttgaacctcttcctggctctgctgctg
agctccttcagcgcagataacctggcctcgacagacgatgacagcgagatgaacaacctg
caggtcgccgtgggtcgcatccagaagggcatcgccttcgtgaagtcgacgctgaggcag
tttctgcagagcctctttttggccgggtccaaacccggcgccctagacgaggagaagcct
ctggacgacctgcacagtgacggcaaggagaactgcctggccaaccatgcgcccgtggct
gtggacgtcggtaaggacttcctcaaggaaccctgcgtgacacctagcaacggggtggaa
agccacgggaagtacggcatcgaggaaggtgactacatgtcgttcatccataatcccagc
ctcaccgtcacggtgcccatcgccgtgggcgagtcagacttcgagaacctcaacacagag
gatttcagcagcgagtcgtctgacgtagagggaagcaaagagaagcttcctgtggaaacg
gttcttctgagttcttctgagggaagcacggtggacatcagacccccgggagagggggca
gagtctgtagagctagaaccagaagagtcgctggaccctgaggactgcttcactgaaggc
tgcgtaatgaggtttcagtgctgtcaggtggacgtggagaagggacgatggaggagctgg
tggactctcaggaaaacctgctttatcatcgtcgagcacaactggtttgagtccttcatc
attttcatgatcctgctgagcagcggtgctctggcatttgaggacatctacgtagagcag
cgtaagacggtcaagacggtgctggaatatgcggataaagtttttacgtatgtcttcatc
ctggagatgttgctgaaatgggtggcctacggctttgttaaatattttaccaacgcctgg
tgctggctcgacttcctgattgtagacgtgtctctggtcagtcttgtagctactgccctg
ggttactctgagctgagtgccattaaatcactgaggaccctgcgtgctctgagaccgcta
agagcactgtcccgcttcgagggcatgagggtcgtggtgaacgctctgctcggcgccatc
ccgtccatcatgaacgtcctgctcgtgtgtctgatcttctggctcatcttcagcatcatg
ggcgtcaacctattcgccggcaagtactaccactgtatcaacagcaccacggacgagctc
ttacccctcgacgtggtgaacaacaagtccgagtgcctggcgctggttaacgacagcgcc
cgctggaagaacgtcaagatcaacttcgacaacgtaggagccggatacctggcactgctc
caagtggccacgtttaagggctggatggacatcatgtacgcagcggtagactctcgcaat
caggaggaacagccattctatgaagtgaacctgtacatgtacctgtacttcgtcatcttc
atcatcttcggctccttcttcacactcaacctcttcatcggtgtcatcatcgataacttc
aaccagcagaagaaaaagttaggaggtcaggatatcttcatgacagaagagcagaagaag
tattacaacgccatgaagaagctcggctccaagaaaccacagaaacccatccccagaccc
gcaaacaaaattcagggcatcatctttgacctgatcaccaaacaagccttcgacatcatc
atcatgatcctgatctgcctgaacatggtgaccatgatggtggaaacggacgatcagacg
aaagacatggacaacatcctgtactggatcaacctggtgttcatcgtgctcttcactggc
gagtgtgtgctgaaaatgttctcactcagacactactacttcaccatcggctggaacgtc
ttcgacttcgtggtcgtgattctgtccatcgtcggaatgttcctctcagaggtgatcgag
aagtatttcgtgtctcctaccttattccgagtcatccgattggctcggatcggccgtatc
ctccgtctcatcaagggggccaaaggcatccgtactctcttgttcgccttaatgatgtcg
ctccctgccttgtttaacatcggtctcctgctcttcctggtcatgttcatctacgccatt
tttggcatgtcaaactttgcctacgtgaaacacgaagccggaattgacgacatgttcaac
ttcgagacgttcggaaactccatgctgtgcctcttccagatcacgacgtcggccggctgg
gacgggcttctggctcccatcctgaacaagcgtgaacccgactgcgacagcgagaccgag
cacccgggcagctcgtaccgtggtgactgcggcaacccttcggtgggcatcttcttcttc
gtcagctacatcatcatctgctttctgattgtggtgaacatgtacatcgctgtcatcctg
gagaacttcagcgttgcgacggaggaaagcgccgaaccgttgagcgaggacgacttcgag
atgttctacgaggtgtgggagcgctttgacccgaacgctacacagtttgtcgagtatgac
aagctgtcagactttgcagatgccctggacccaccgctgcgcattcctaaacccaacaag
atccagctgatcgccatggacctgccgatggtcagcggagaccgcatccactgcctggac
atcctgttcgccttcactctgcgcgtgctgggtgaggagggcgagatggacgcgctgcgt
ggccagatggaggagcgtttcatggcctccaatccgtccaaagtgtcctacgaacccatc
accaccaccttgcggcgcaaacaggaggaaatgtcagctatcatcatccagcgagccttc
cgacgctaccgcatccgcatcacggtcaagaaggcgtcagacatgtaccgcaagcggctg
cagatcggcagcgaacctctgcccgagaaagaggtgctcgtgatcgggaagtttccagag
aactccgcatcggacaaaacggacatgactccgtcttcggcttcgccaccttcgtataac
agcgtagccaaatcagagaaggacaagtatgagaaggaaaggcgggagaaggagaacaat
gcaaaagacacgcgtgagagaaagaaataa
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integrated database retrieval system
