KEGG   Tachysurus fulvidraco (yellow catfish): 113657012
Entry
113657012         CDS       T08119                                 
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
  KO
K10484  structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    113657012 (slx4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tfd04121]
    113657012 (slx4)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113657012 (slx4)
Ubiquitin system [BR:tfd04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul3 complex
    Adoptor and target recognizing subunit (BTB)
     113657012 (slx4)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     113657012 (slx4)
SSDB
Motif
Pfam: BTB Slx4 zf-met DUF1450
Other DBs
NCBI-GeneID: 113657012
NCBI-ProteinID: XP_027024316
LinkDB
Position
1:15088200..15097316
AA seq 1610 aa
MDDSDLDLSFLCSRLLKRVRRKCAESGDEKKRVVKDEGENQDSGSEIQSRSKAPWKRKRE
KKEGPESRTTDRCRSEGRGHEGSETGVVREGEQKGQKLRAKEQVLGRMQRFKRVTPPCLV
HTKEESSAESAVQPSEKPSPPVQEPVEKQESDNALAQRLQQQLDREVENQAVVDVEDGCL
FFCQLCYKDLSAMSHQLRTQHINRCLDERESSTSRVPAPASRPAPRSRIPECPICGKCFK
SEKTRSTHLKRCSASMGVSPAELLKALQRQAAERENGQQAVGSSDNSDSSMPVKKKARKK
APGMDEDTMMALALSRSLLEQEKERDRDREEERRIQAQLESTKPGAAPEVVQGRSGAGKS
RVKRRKGDPAAPPPLLLVQDPQAAQKRIQERVSSLLLLTRPPTPPTPTLLPSALSTHTFL
WLKSALPGGGSASFSDFYTAELEAFIQPDIGVEKNTSLLSEATPAKQSPAAASDFTMVPE
QLLDESAGHRPSTPSLGTPGTQALTDLVDLAEEGMTLTQYKSTDAEPHLSGFGPESTETP
RPAINSTSVSRLCSDLGSMVNNPQLSDVQLQVDSGDIYYAHSFMLYTRCPLLASMVHDAG
FGVQEEGFPQAQRVLLNDVSGKAVYILLQFLYTAVCHLTHILLPDVLQLARRFGLSELQQ
QCEQYTGNLTEDPREQERDTSLGHESTGEPQQSLVDTPFLDLLRSMWEHEDGDEKAIMEA
SRGTQGEDQDGSGDGEMEDDRVDEDELNEIYEFAATQRKLGAERVVTTERDDEEEGANER
MKDNCSDAEQRQEGKKDFEMEDVHHNGEVDLKPDSNRNVHQSRGPEGSLDRSYNHLFSES
WGEYIEPSQTQTQHLDLQKTPTSRPTSSVSEVIDLSVSPPLDSGEPARLLFPVTGVSPGE
SPDLIEAVKQTSVSPKAHCISQLTSELGSKHPSAPSLRQTQLEVTTLLHSSTKPKLSSPT
PNRSQPELIVLSDSSDDMEPDEVPSRCDAPRPPILSPSRLSLRYSQIKSKEATQAELSPK
RSLEPFSSVHPEPSLLDQVGNENVLDGSAEVSWLIPATPERSTRTRTTQTSSSMRRTQLF
PRSHSSSSSSISDSSKTTSCSNSFKPHREHSQPSPAFQNPTSHSRLSKTSQSNSVDRKYP
NSASAPCSSTPLHSDPRLQHLDALESPLLRDSELITHKTVSQERRLGSCHLSPLENSLSP
QRSSNSEMESSKSPAKSQHSDNPGDSEDPVTSTDEKERVETRKSKTNKEEVMEEEFSFVF
DEPPIAFNDSWGLGGAVAERGLHFSLRLESSGAQTSSPEENGQGETASPHTFSPPAHGAQ
EHLPDSGSPLDHRLPDAAMWDSWKEDEEEVEALPLSQRVGSMALAKRVSQLRTPVACKKK
NHHVPLVPITPMPSFSDMDTPELKNKLNRYGVRPLPKKQMVLKLKEIHQYTHQLMSSGSD
EETSPRATPAAFKQPTAPPPVSPRKLQFGQEEEEQDALPASQESNTSSTAESERSNPELC
DSDDDRSDSDDITASQAAVREKDKLQAVRSFILSDPVLYKRVLQYQPLALCELKAGLRTA
GVRLGTAKLLDFLDSQCITFTTAKQGHPAPSRRRARGAGRGRKRLAMAAE
NT seq 4833 nt   +upstreamnt  +downstreamnt
atggacgactcagacctggacttgtccttcctctgctcacgtctactgaagagagtgcga
cggaaatgtgcagagtctggagatgagaagaaaagagtggtgaaggatgaaggagaaaac
caagactcggggtctgagatccaaagcaggagcaaagcgccatggaaaaggaaaagggag
aagaaggaaggacctgagagtagaactacagacaggtgccgtagtgagggacgtggacat
gaaggatcggagactggtgtagtgagagaaggggagcaaaaggggcagaagttgcgggcg
aaggaacaggtgctcggcaggatgcagcgttttaagagagtgaccccaccttgccttgtg
cacacaaaggaagagtcgagtgcggaatctgctgtacagccctctgagaaaccatcgcct
ccagtgcaagagcctgttgagaaacaagagagtgataatgcattggctcagagattacag
cagcagttagaccgtgaggttgagaaccaggctgtagtggatgtggaggacggatgcctg
ttcttctgtcagctctgctacaaagacctttcagctatgagccatcagctgcgcacacag
cacatcaaccggtgtcttgatgaacgtgagagcagcacctcacgtgttccagctcctgct
tctcgtccggctcctcgttcacgcatacccgaatgtcctatatgcgggaagtgctttaag
tctgaaaagacccgctccacacatttaaagcgttgctcggcgagcatgggcgtgtctccg
gccgagttgctgaaggccctgcagagacaggcggccgaacgagagaacgggcagcaagca
gtaggcagcagtgacaattcagattccagcatgcctgtgaagaagaaagccagaaaaaaa
gcaccgggcatggatgaagacaccatgatggccctggccctgtctcgctctctgctggag
caggagaaggagcgagacagagaccgagaggaggagagacgcatccaggcacagctggag
agcactaagccaggcgcagctcctgaggtggtacaggggaggtccggggcaggtaagagt
cgagtaaagagaaggaaaggagacccagctgctcctcctccccttctcctggtccaggac
ccacaggctgctcagaagcgaatccaggagagagtctcctcgctgctccttttaaccaga
cctcctactcctcccacccccaccctgttgccctccgcgctctccacacacaccttcctc
tggctcaagagtgcgctgcctggaggaggatcggcttcattttctgacttttacactgca
gagctcgaagcgtttatacagcctgatattggcgtggagaagaacacatctctcttgtca
gaggcaacaccagcaaaacagagtcctgcagcagcctcggactttactatggttccggaa
cagcttctagatgaatccgctggccatcgtccctccaccccgagcctgggcacgcccggg
acacaggccctgacagacctggtggatctggctgaggaaggcatgacactcacacagtac
aaatccaccgatgcagaacctcatctcagcggatttggtccagaatctaccgagaccccg
agacctgccataaactctacgagtgtatcgaggctgtgttctgatctgggcagcatggtg
aacaaccctcagctcagtgatgtgcagctgcaggtggacagcggcgacatctactatgct
cactcctttatgctctacacacgctgccctctgctggccagcatggtccacgatgcagga
tttggagtgcaggaggaaggctttccacaggctcagagagtcttgttgaatgatgtgtcc
ggtaaagcagtgtacattctgttgcagttcctctacactgctgtttgccacctgacacac
atcctgctgccagatgtactccagctagccagaaggtttggtctgtctgagctgcagcag
cagtgtgaacagtacactggaaatctaacggaggacccaagagaacaggaaagggacact
tccctgggtcatgagtccacaggtgaaccccagcagagcctggtcgatacaccgttcctg
gatcttctgcgctctatgtgggaacatgaggacggtgacgaaaaggcaatcatggaagcc
tcgagagggacacagggtgaggaccaagatggcagcggagacggagagatggaagacgat
cgagtcgacgaggacgagttgaatgagatttacgagtttgcagccactcaaaggaaactg
ggggctgagcgagtggtgactactgagcgtgatgacgaagaggaaggggctaatgagaga
atgaaggacaactgctctgatgcagaacagaggcaagaaggaaagaaagatttcgaaatg
gaagacgtgcaccataatggtgaagttgatttgaaacctgactctaacagaaatgtacac
caaagcagaggtccggaaggcagcttagaccggagctacaaccacctgttctctgaatca
tggggagaatacatagagccgtctcagacacaaactcaacatttagacctgcagaaaaca
cccacttcacggcccacatcttcagtcagcgaagtgattgacctgtccgttagtccccca
ctggattctggggaaccagccaggttgctatttcctgtgactggtgtgtctccaggagag
tctccagacctgattgaagcagttaaacagacttcagtgagtccaaaagctcactgcatc
tcacagctcacatcagaactcgggtctaaacacccctcagctccatctcttagacaaacc
cagcttgaggtaaccactttactacacagtagcaccaaacccaaactctcctctcccacg
cccaatcgcagccagcctgagctcattgtcctttccgactccagcgatgacatggaacct
gacgaagttccttcacgctgtgatgctcccagaccaccaattttatctccatcacgactc
agtctacgctactctcagattaaatctaaagaggccacacaggccgaactctctcccaaa
agatcactcgagcctttcagttctgtgcatccagaaccttccctattggatcaggtaggc
aatgagaatgtactggacggctctgctgaggtttcgtggttaattccagccactccagaa
cgttcaacccgcactagaaccacgcagacctctagcagcatgcgccgcactcagctcttc
cccagatctcactcttcatcctcctcttccatttctgacagctccaaaactacatcatgc
tcaaactctttcaaacctcacagagaacattctcaaccgtctccagctttccagaatccc
acatcccattccagattgtccaagacttcacagagcaactctgtcgatcgaaagtatcct
aattccgcgtccgcaccctgcagcagcactcctctccactcagaccctcgtctacagcat
cttgacgctcttgaatctcctttactgagagacagtgagctgataactcacaaaacagtg
agtcaagaacgcagacttggatcctgccatcttagtccattggagaactcgctttcacca
caacgaagttcaaattcagaaatggaatcaagcaaaagtcctgccaaatcccagcactct
gataaccctggagatagcgaagatccagtgacgagcactgacgaaaaagagcgggtggaa
acaaggaaaagcaaaacaaataaagaagaagtgatggaggaagagttctcttttgtcttt
gatgagccgcccattgcgttcaatgactcatggggtttggggggagcggttgcagagcgg
gggctacactttagtctgaggctggagagtagcggagcccaaactagttctccagaagaa
aacggacagggtgagaccgcttccccgcacacattttctccccctgcgcatggagctcag
gagcacctgccagattctggatctccacttgaccacagattgccagatgcagccatgtgg
gacagctggaaagaggatgaggaggaagtggaagctcttcctctctctcagagagtgggt
tcaatggctctcgctaagagagtgtctcagttaagaacgccagtcgcttgcaagaagaag
aatcatcatgttccactggtgcccatcacgcccatgccaagcttctcagatatggacaca
cccgagcttaagaacaaactcaacaggtacggcgtgcggcctcttcctaagaagcaaatg
gtgctgaagttgaaggaaatccaccagtacacccaccagctgatgagttccggctctgat
gaggagacttctccaagagccacaccagctgctttcaaacagcccacagcgccccctcct
gtctctcccaggaaactgcaatttggacaagaggaggaggagcaggatgcattacctgca
tctcaggagtccaacacctcctccacagccgagtcagaaagatccaacccggagttgtgt
gactctgatgacgacagatccgacagcgatgacatcacagcttctcaggcggctgtacgt
gagaaagacaaactccaggctgttcgttctttcatcctgtctgacccggtgctgtacaag
cgtgtgctgcagtaccagccgcttgctctgtgtgagctgaaggcaggcctccggacagca
ggtgtcaggctgggcactgccaaactgctggacttcctggactctcagtgtatcactttt
acaacagcaaagcaaggccatccggcaccttcgcgcaggagagctcgtggagcaggtaga
ggtaggaaacgactagcgatggcagccgagtga

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