Tachysurus fulvidraco (yellow catfish): 113657012
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Entry
113657012 CDS
T08119
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
113657012 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113657012 (slx4)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113657012 (slx4)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
113657012 (slx4)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113657012 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
Slx4
zf-met
DUF1450
Motif
Other DBs
NCBI-GeneID:
113657012
NCBI-ProteinID:
XP_027024316
LinkDB
All DBs
Position
1:15088200..15097316
Genome browser
AA seq
1610 aa
AA seq
DB search
MDDSDLDLSFLCSRLLKRVRRKCAESGDEKKRVVKDEGENQDSGSEIQSRSKAPWKRKRE
KKEGPESRTTDRCRSEGRGHEGSETGVVREGEQKGQKLRAKEQVLGRMQRFKRVTPPCLV
HTKEESSAESAVQPSEKPSPPVQEPVEKQESDNALAQRLQQQLDREVENQAVVDVEDGCL
FFCQLCYKDLSAMSHQLRTQHINRCLDERESSTSRVPAPASRPAPRSRIPECPICGKCFK
SEKTRSTHLKRCSASMGVSPAELLKALQRQAAERENGQQAVGSSDNSDSSMPVKKKARKK
APGMDEDTMMALALSRSLLEQEKERDRDREEERRIQAQLESTKPGAAPEVVQGRSGAGKS
RVKRRKGDPAAPPPLLLVQDPQAAQKRIQERVSSLLLLTRPPTPPTPTLLPSALSTHTFL
WLKSALPGGGSASFSDFYTAELEAFIQPDIGVEKNTSLLSEATPAKQSPAAASDFTMVPE
QLLDESAGHRPSTPSLGTPGTQALTDLVDLAEEGMTLTQYKSTDAEPHLSGFGPESTETP
RPAINSTSVSRLCSDLGSMVNNPQLSDVQLQVDSGDIYYAHSFMLYTRCPLLASMVHDAG
FGVQEEGFPQAQRVLLNDVSGKAVYILLQFLYTAVCHLTHILLPDVLQLARRFGLSELQQ
QCEQYTGNLTEDPREQERDTSLGHESTGEPQQSLVDTPFLDLLRSMWEHEDGDEKAIMEA
SRGTQGEDQDGSGDGEMEDDRVDEDELNEIYEFAATQRKLGAERVVTTERDDEEEGANER
MKDNCSDAEQRQEGKKDFEMEDVHHNGEVDLKPDSNRNVHQSRGPEGSLDRSYNHLFSES
WGEYIEPSQTQTQHLDLQKTPTSRPTSSVSEVIDLSVSPPLDSGEPARLLFPVTGVSPGE
SPDLIEAVKQTSVSPKAHCISQLTSELGSKHPSAPSLRQTQLEVTTLLHSSTKPKLSSPT
PNRSQPELIVLSDSSDDMEPDEVPSRCDAPRPPILSPSRLSLRYSQIKSKEATQAELSPK
RSLEPFSSVHPEPSLLDQVGNENVLDGSAEVSWLIPATPERSTRTRTTQTSSSMRRTQLF
PRSHSSSSSSISDSSKTTSCSNSFKPHREHSQPSPAFQNPTSHSRLSKTSQSNSVDRKYP
NSASAPCSSTPLHSDPRLQHLDALESPLLRDSELITHKTVSQERRLGSCHLSPLENSLSP
QRSSNSEMESSKSPAKSQHSDNPGDSEDPVTSTDEKERVETRKSKTNKEEVMEEEFSFVF
DEPPIAFNDSWGLGGAVAERGLHFSLRLESSGAQTSSPEENGQGETASPHTFSPPAHGAQ
EHLPDSGSPLDHRLPDAAMWDSWKEDEEEVEALPLSQRVGSMALAKRVSQLRTPVACKKK
NHHVPLVPITPMPSFSDMDTPELKNKLNRYGVRPLPKKQMVLKLKEIHQYTHQLMSSGSD
EETSPRATPAAFKQPTAPPPVSPRKLQFGQEEEEQDALPASQESNTSSTAESERSNPELC
DSDDDRSDSDDITASQAAVREKDKLQAVRSFILSDPVLYKRVLQYQPLALCELKAGLRTA
GVRLGTAKLLDFLDSQCITFTTAKQGHPAPSRRRARGAGRGRKRLAMAAE
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcagacctggacttgtccttcctctgctcacgtctactgaagagagtgcga
cggaaatgtgcagagtctggagatgagaagaaaagagtggtgaaggatgaaggagaaaac
caagactcggggtctgagatccaaagcaggagcaaagcgccatggaaaaggaaaagggag
aagaaggaaggacctgagagtagaactacagacaggtgccgtagtgagggacgtggacat
gaaggatcggagactggtgtagtgagagaaggggagcaaaaggggcagaagttgcgggcg
aaggaacaggtgctcggcaggatgcagcgttttaagagagtgaccccaccttgccttgtg
cacacaaaggaagagtcgagtgcggaatctgctgtacagccctctgagaaaccatcgcct
ccagtgcaagagcctgttgagaaacaagagagtgataatgcattggctcagagattacag
cagcagttagaccgtgaggttgagaaccaggctgtagtggatgtggaggacggatgcctg
ttcttctgtcagctctgctacaaagacctttcagctatgagccatcagctgcgcacacag
cacatcaaccggtgtcttgatgaacgtgagagcagcacctcacgtgttccagctcctgct
tctcgtccggctcctcgttcacgcatacccgaatgtcctatatgcgggaagtgctttaag
tctgaaaagacccgctccacacatttaaagcgttgctcggcgagcatgggcgtgtctccg
gccgagttgctgaaggccctgcagagacaggcggccgaacgagagaacgggcagcaagca
gtaggcagcagtgacaattcagattccagcatgcctgtgaagaagaaagccagaaaaaaa
gcaccgggcatggatgaagacaccatgatggccctggccctgtctcgctctctgctggag
caggagaaggagcgagacagagaccgagaggaggagagacgcatccaggcacagctggag
agcactaagccaggcgcagctcctgaggtggtacaggggaggtccggggcaggtaagagt
cgagtaaagagaaggaaaggagacccagctgctcctcctccccttctcctggtccaggac
ccacaggctgctcagaagcgaatccaggagagagtctcctcgctgctccttttaaccaga
cctcctactcctcccacccccaccctgttgccctccgcgctctccacacacaccttcctc
tggctcaagagtgcgctgcctggaggaggatcggcttcattttctgacttttacactgca
gagctcgaagcgtttatacagcctgatattggcgtggagaagaacacatctctcttgtca
gaggcaacaccagcaaaacagagtcctgcagcagcctcggactttactatggttccggaa
cagcttctagatgaatccgctggccatcgtccctccaccccgagcctgggcacgcccggg
acacaggccctgacagacctggtggatctggctgaggaaggcatgacactcacacagtac
aaatccaccgatgcagaacctcatctcagcggatttggtccagaatctaccgagaccccg
agacctgccataaactctacgagtgtatcgaggctgtgttctgatctgggcagcatggtg
aacaaccctcagctcagtgatgtgcagctgcaggtggacagcggcgacatctactatgct
cactcctttatgctctacacacgctgccctctgctggccagcatggtccacgatgcagga
tttggagtgcaggaggaaggctttccacaggctcagagagtcttgttgaatgatgtgtcc
ggtaaagcagtgtacattctgttgcagttcctctacactgctgtttgccacctgacacac
atcctgctgccagatgtactccagctagccagaaggtttggtctgtctgagctgcagcag
cagtgtgaacagtacactggaaatctaacggaggacccaagagaacaggaaagggacact
tccctgggtcatgagtccacaggtgaaccccagcagagcctggtcgatacaccgttcctg
gatcttctgcgctctatgtgggaacatgaggacggtgacgaaaaggcaatcatggaagcc
tcgagagggacacagggtgaggaccaagatggcagcggagacggagagatggaagacgat
cgagtcgacgaggacgagttgaatgagatttacgagtttgcagccactcaaaggaaactg
ggggctgagcgagtggtgactactgagcgtgatgacgaagaggaaggggctaatgagaga
atgaaggacaactgctctgatgcagaacagaggcaagaaggaaagaaagatttcgaaatg
gaagacgtgcaccataatggtgaagttgatttgaaacctgactctaacagaaatgtacac
caaagcagaggtccggaaggcagcttagaccggagctacaaccacctgttctctgaatca
tggggagaatacatagagccgtctcagacacaaactcaacatttagacctgcagaaaaca
cccacttcacggcccacatcttcagtcagcgaagtgattgacctgtccgttagtccccca
ctggattctggggaaccagccaggttgctatttcctgtgactggtgtgtctccaggagag
tctccagacctgattgaagcagttaaacagacttcagtgagtccaaaagctcactgcatc
tcacagctcacatcagaactcgggtctaaacacccctcagctccatctcttagacaaacc
cagcttgaggtaaccactttactacacagtagcaccaaacccaaactctcctctcccacg
cccaatcgcagccagcctgagctcattgtcctttccgactccagcgatgacatggaacct
gacgaagttccttcacgctgtgatgctcccagaccaccaattttatctccatcacgactc
agtctacgctactctcagattaaatctaaagaggccacacaggccgaactctctcccaaa
agatcactcgagcctttcagttctgtgcatccagaaccttccctattggatcaggtaggc
aatgagaatgtactggacggctctgctgaggtttcgtggttaattccagccactccagaa
cgttcaacccgcactagaaccacgcagacctctagcagcatgcgccgcactcagctcttc
cccagatctcactcttcatcctcctcttccatttctgacagctccaaaactacatcatgc
tcaaactctttcaaacctcacagagaacattctcaaccgtctccagctttccagaatccc
acatcccattccagattgtccaagacttcacagagcaactctgtcgatcgaaagtatcct
aattccgcgtccgcaccctgcagcagcactcctctccactcagaccctcgtctacagcat
cttgacgctcttgaatctcctttactgagagacagtgagctgataactcacaaaacagtg
agtcaagaacgcagacttggatcctgccatcttagtccattggagaactcgctttcacca
caacgaagttcaaattcagaaatggaatcaagcaaaagtcctgccaaatcccagcactct
gataaccctggagatagcgaagatccagtgacgagcactgacgaaaaagagcgggtggaa
acaaggaaaagcaaaacaaataaagaagaagtgatggaggaagagttctcttttgtcttt
gatgagccgcccattgcgttcaatgactcatggggtttggggggagcggttgcagagcgg
gggctacactttagtctgaggctggagagtagcggagcccaaactagttctccagaagaa
aacggacagggtgagaccgcttccccgcacacattttctccccctgcgcatggagctcag
gagcacctgccagattctggatctccacttgaccacagattgccagatgcagccatgtgg
gacagctggaaagaggatgaggaggaagtggaagctcttcctctctctcagagagtgggt
tcaatggctctcgctaagagagtgtctcagttaagaacgccagtcgcttgcaagaagaag
aatcatcatgttccactggtgcccatcacgcccatgccaagcttctcagatatggacaca
cccgagcttaagaacaaactcaacaggtacggcgtgcggcctcttcctaagaagcaaatg
gtgctgaagttgaaggaaatccaccagtacacccaccagctgatgagttccggctctgat
gaggagacttctccaagagccacaccagctgctttcaaacagcccacagcgccccctcct
gtctctcccaggaaactgcaatttggacaagaggaggaggagcaggatgcattacctgca
tctcaggagtccaacacctcctccacagccgagtcagaaagatccaacccggagttgtgt
gactctgatgacgacagatccgacagcgatgacatcacagcttctcaggcggctgtacgt
gagaaagacaaactccaggctgttcgttctttcatcctgtctgacccggtgctgtacaag
cgtgtgctgcagtaccagccgcttgctctgtgtgagctgaaggcaggcctccggacagca
ggtgtcaggctgggcactgccaaactgctggacttcctggactctcagtgtatcactttt
acaacagcaaagcaaggccatccggcaccttcgcgcaggagagctcgtggagcaggtaga
ggtaggaaacgactagcgatggcagccgagtga
DBGET
integrated database retrieval system