Tachysurus fulvidraco (yellow catfish): 113658938
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Entry
113658938 CDS
T08119
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113658938 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113658938 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113658938 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tfd04147
]
113658938 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113658938 (col6a2)
Exosome [BR:
tfd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113658938 (col6a2)
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113658938 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
113658938 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
113658938
NCBI-ProteinID:
XP_027027252
LinkDB
All DBs
Position
2:19494026..19511907
Genome browser
AA seq
1021 aa
AA seq
DB search
MWKRRTMLFKAIILCLLHMASVGQALDCHKSDECPIDLYFVIDTSETIALQEPPPGSLVD
SVTNFTKKFVEKLEDVDYKGKVKFNWAVGGLHFSMTQSIISKLTSKDEFIRKLKEVRYLG
KGTFIDCAIQKMSEEIMIQRPDSPSNAKTQRYAVVITDGHVTGNPCGGIKVAAERARDKG
IKIFSIASSNSLEELGLREIANSPVGVYRDNYMAVDLSRGRPELLTEHIDRIYNTMLHLA
YQECYSVKCLQTPGPPGPVGPRGQKGAKGDSGSVGPKGDRGHPGDPGIEGPIGYPGPKGD
RGHKGEKGEIGSTGRKGVAGIPGRNGTDGQKGKIGRIGASGCKGESGDTGPAGFAGGVGD
SGPKGAPGEKGDAGRPGREGPPGPPGEPGPKGETGSPGTPGIPGQKGPQGTAGGPGNKGD
TGRRGDPGPKGSQGSDGPKGEKGEPGSEGLRGLPGEAGSKGTKGDQGLPGPRGPAGQIGE
PGRNGSRGDPGDAGPRGDPGPPGAIGDRGRQGFNYPGSRGPTGDIGVKGRPGARGSRGDC
GQKGDPGQKGVPGEPGDPGPEGEPGKRGPNGEPGRDGDPGPEGDPGLTECDVMNYIRETC
GCCDCEKRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSIAKDPHSETGTRVGV
VQYSHSGTFQAIQLNDSKIDSLTAFKDAVKNLEWIAGGTWTPSALKFAYDNLIRDSRRSK
AKVTVVVITDGRFDPRDQDALLGYLCTDSSIDVNAIGVGDMFAEEEESESLKSIACDKQD
RVTGMKRFADLVAEEFIDRIETVLCPNPVIICPDLPCKAEPAVASCIQRPVDLVFLLDGS
ERLGSDNFQSVREFVENVAHRLTLAQNARDKNKARVALVQYGGENRQDAIFKLTHNFTVI
SDGLSNMRYMDASSNVGSAITYAINNILQSGNTRLTRSNAEISFVFITDGITEKKNLEEG
ISSMRRAEGVPTVIAMGKDEAVDKEVLTKLALGDQTAIFRGKDYSQLSKSSFFERFIRWV
C
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagaggaggacgatgctgtttaaagcgattatcctgtgcttactgcacatggcg
tcagtcggccaggcgctggactgtcacaaatcggacgaatgccccatagacctgtatttc
gttatcgatacgtcagagaccatcgctctccaggagcctccaccaggcagcctggttgac
agtgtgacaaatttcaccaagaaatttgtcgaaaagctggaagacgtagattacaaaggc
aaggtgaagtttaactgggctgtgggtggactgcatttctccatgacacagtcgatcatt
agcaaactcaccagcaaggatgaattcatcaggaaattaaaagaggttcgttacttgggc
aagggcacctttattgactgtgccatccagaaaatgagtgaagagattatgattcaaaga
cccgattctccgagcaacgccaagacgcagcgatacgcggtcgtcatcacggacggccat
gtgaccgggaacccctgtggcggcatcaaggtggcagccgagcgggctcgggacaagggc
attaagatattttccatagcatcatccaacagcctagaggaactaggccttagagaaatc
gctaattctcctgtcggggtttaccgcgacaactacatggctgtcgatctctccagagga
cgacctgagcttttaacagaacatattgatcgcatttacaacaccatgctgcatctagct
tatcaagagtgctacagtgtgaagtgcctgcaaacacccggacctcctggtccagtcggt
cccaggggtcagaaaggtgccaaaggagacagtggttctgtgggtcccaaaggtgacaga
ggccaccctggtgatcctgggattgaaggtcctattggttaccctggaccaaaaggagac
cgtggtcacaaaggtgaaaagggagaaattggctcaacaggaaggaagggagttgcaggc
attccaggacgcaacggtactgatggtcagaagggcaaaattggccgcatcggggcttct
ggctgtaaaggcgaatcaggtgacacgggtcctgctggttttgctggaggtgtaggagac
agtggtccaaagggagctcctggagagaagggagatgcaggtcgacctgggagagaagga
ccacctggtccaccaggagaacctggtcccaagggtgagacaggtagtccaggtacacca
ggtatccctgggcaaaagggccctcaaggaacagctggaggccctggcaataaaggcgac
actggaagaagaggagaccctggaccaaagggaagccagggatcagatgggccaaaggga
gaaaagggtgaaccgggatctgaaggtctaagagggcttccaggtgaagctggcagtaaa
ggaaccaagggagatcaaggacttccaggacccagaggtccagcaggacaaataggagag
ccaggaagaaatggaagccgtggtgaccctggagatgctggaccaagaggtgatccagga
cccccgggagcaatcggtgacagaggtagacaagggttcaactaccctggatccaggggg
ccaacgggtgacataggagtcaaaggtagacctggagctcggggcagcagaggagactgt
ggtcaaaagggagacccgggacagaaaggagtaccaggagaacctggagatcctggacct
gaaggagagcctggaaaaagggggcctaatggagaaccaggaagagatggtgatcccggt
ccagagggagacccaggtcttacagaatgtgatgtcatgaactatatcagagagacctgt
gggtgttgtgactgtgagaagaggtgtggagcactggatattgtatttgtgatcgacagc
tctgagagtgtgggactaacaaacttcactctggagaagaactttgtaatcaacaccatc
aaccgattgggctcgatagctaaggatcctcactcagagacaggaacacgtgttggtgtg
gtccagtacagtcacagtggaaccttccaggccatccagctaaacgactccaagatcgat
tcccttacagccttcaaagatgctgtgaagaatctggagtggatcgctggtggcacatgg
actccgtctgccctgaaatttgcctacgacaacctaatccgtgatagtcgacgttccaag
gctaaagtgactgtggtggtgatcaccgatggtcgctttgatccccgggatcaagacgca
ctgctgggttacctgtgcacggatagcagcatcgatgtaaatgccattggtgttggagac
atgttcgcagaggaagaagaatctgaaagtttgaagtccattgcctgtgacaaacaagac
agagtgacgggcatgaagcggtttgctgacctggtggcagaggaattcattgacaggatt
gagactgttctttgcccaaacccagtgatcatctgccctgaccttccatgcaaagctgag
ccagcagtagccagttgcattcagcgtcctgttgatcttgtgttcttactggatggttct
gaacgtctgggctcggataactttcagagcgttcgtgagtttgtggagaacgtggctcac
cgcctgaccttggctcagaacgctagggacaaaaataaagctcgtgtggctctggtacag
tacggtggtgaaaaccgtcaggatgcaatcttcaaacttacacacaatttcactgtcatc
tctgacggcctttcaaacatgaggtacatggacgcgtcttccaacgtgggcagtgccatt
acctatgcaatcaacaacatcctgcagagcggaaacacccgcttaactcgaagcaacgct
gaaatctcctttgtctttatcactgatggaatcaccgaaaagaagaatctggaggaaggt
ataagctccatgcgccgtgcagagggtgtgcccactgtcatcgccatgggcaaagatgaa
gctgttgacaaggaagtgctgacaaagcttgctctgggagaccagacagctattttcaga
gggaaagattactcccaactgtccaaatccagcttctttgaacgtttcattagatgggtc
tgctga
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