Takifugu flavidus (sansaifugu): 130532165
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Entry
130532165 CDS
T09160
Symbol
col6a4a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04510
Focal adhesion
tfs04512
ECM-receptor interaction
tfs04518
Integrin signaling
tfs04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130532165 (col6a4a)
04518 Integrin signaling
130532165 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130532165 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130532165 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tfs04147
]
130532165 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
tfs00536
]
130532165 (col6a4a)
Exosome [BR:
tfs04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130532165 (col6a4a)
Glycosaminoglycan binding proteins [BR:
tfs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130532165 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
130532165 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
VWA_3
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
130532165
NCBI-ProteinID:
XP_056900527
LinkDB
All DBs
Position
10:11211767..11237113
Genome browser
AA seq
2560 aa
AA seq
DB search
MEGGRSLLLILILASCFYGNGAQRTECATVGDIVFLVDGSSSIGTNNFQQVRLFLRSFAS
GLDIGPDKIRIGLAQYSNDPHQEFLLKDHMEKTALLAALDSFPYRTGGTETGKAIDFLRT
QYFTKEAGSRANQRVPQIAVVITDGDSTDDVTVPAQSLRKHGVIVFAIGVGNANQNELES
IANRPPKRFKFTIDSFQALQRLTKGLLQTMCVSIEDQHQALKEKFADIFFLVDSGLNPTD
FQHVKTTLSRLVNQMNFNAYTYRLGLAQYGQNIDVKFLFKTHQTKEELLKAIKAVNNRRL
QPNEVHNLGSALQYAYKNFFTAEAGSRTDQSFRQYLVVVSGKDSNDPFYKEARLLKSAGI
YIITFSAGASMKELSVLSSPRYSYQSVSNALPNLRTILEKKQEVMEVTDDCKVANIADIV
FIIDESGSIGSPNFQLMRSFLHSLISGLQVASNRVRVGIVMYNVEPMAQVFLNTFKDKSE
LLDFIKILPYHGGGTNTGVALNFTLQEVFIKQRGSRKDLGVQQVAVVITDGKSQDEVSSP
AANLRRAGVTVYAVGVKDADKAQLDQIASYPTNKHTFIIDSFTKLKTLEASLQRILCQNV
VQRAFSVNSRRASIREGCRQTDEADVFFLIDHSGSIHPADFHDMKKFIIEFLHTFRIGPQ
HIRMGVVKFADSPQLEFDLQAYSDVKSLEDAILNIKQIGGGTETGRALEFMGPQFDQALA
TRGHKVKEYLVVITDGKSTDKVKAPADKLRSQNVVVYAIGVKDADENQLLEISGDPQRTF
FVNNFDALRPIKDDIITDICSQEVCKDIPGDLIFLIDSSGSIYQEDYKKMKDFMKSVIKK
SIVGKNEVHVGVMQYSTIQKLVFPLNQYYTKDELSKAIDEMQQIGGGTHTGEAITDVSQY
FDARNGGRPDLKQRLVVVTDGESQDEVRRPAEDLRAKGVIVYSIGVVAANTSQLLEISGT
PNRMYAGRDFDALKDLEKQMAMELCDPDRECKKTEKADIIFLVDGSTSITQPKFHSMLKF
MASMVNQTTVGSDLTRFGVILYSNDANSIFTLKQYSAKQEVLRAIAALKSPLGDTYTAKA
LTYSLQFFNEEHGGRAALQVPQILMVITDGDATDRNKLVPPSLALQNQGISVFSIGVEGA
NKTQLEIMAGGDRSKVFYVDNFDALENLYKNITHVLCNSTKPACEKQKADLVFLLDQSGS
IQPNDYITMKKFTVDLIKSFKVSKEFVHVGLAQFSSSFHHEFYLNQFFTEQVISKHVMDL
QQLGGGTNIGLALNSIREYFEVSRGSRSPEGISQNLVLITDGESQDDVEDAARLLRSLGV
EVFTIGIGNAHDLELLQISGSPERVFTVKSFGNLENIKQKVVDTICESKLIPDRPDCSID
IAMGFDISKRSGASGEMLITGHAALQTFLPEIAHYVSSIKGLCCAGPTPVKTNMGYRVVR
QDGSTLYDFNFEAYSRGVVDKVMTISLAEPTYFNTALLKSFQEKFSQSGAGVKVLVIFSD
GLDEDVMKLEQESELLRKSGVSALMVVALEGTNSLGQLQMVEFGRGFGYKVPLSINMQSI
GSTLLKQIDMVSDRECCGVMCKCSGHEGVRGSRGPPASKGVTGQKGHPGFPGEEGVAGDR
GRPGPSGPQGVQGCSGPRGLPGNRGLRGNRGENGEDGLNGVDGEQGDAGNDGSRGERGHA
GNPGIPGIRGEPGLKGQRGLRGDPGEPGAQNTVPGPRGEAGNPGLPGQPGVDGXAGESGV
IGEPGPDGRRGPMGEKGSIGNPGEAGLPGLPGASGPLGSRGARGPPGQPGIQGLPGPQGG
PGPAGRPGVAGRRGTSGPKGEPGDPGVQGVPGPQGPRGLQGEDGRDGYGSPGPVGIKGDP
GFPGYTGLLGESGLQGPKGNPGPKGNTGQTGKAGFPGDPGLSGEPGYSGHRGPRGPPGSK
SMTECQMITYIRDNCACSSNHPGCPVYPTELVIGLDMSQNVTSAAFEKQRAAVLSLIEDI
AIAESNCPTGARVAVVGYSSYIKHLIRFQDYHRKKQLIEFVKNIAMERTGNSRKLGTAMR
FVGQNIFKRVRAGAMTRKVAVFFSGGATQDVSDVVTAVMEYRGLNIVPAIVSLRNDPALS
QAMEVDDSLNSIFAVLGRDAVADLWKVKNCAMCYDPCKRTEQCSFIQEKVLPQEADLDLA
LVVDGSREIQADEFAGIQQLLGSVVEQLAVSPQPRKPGNQARVAVIQQSSAQVIKPEFGL
QAYQNQNLMKRHLVQNMQQLSGSSALGHTLEFALNKVLLKATHPRQRRVLFTVVGSQTAQ
EDSAKLQYISQKARCEGVALFVVTVGNRYNRTEVEEIVSTPVQQHLIHVGSMEAGEQAYI
RRFFRVFVNALSKGMNAYPPPNLKKSCNQMLGQGGGQSSIPGQDLVEVELKDEGFREHMR
GQADTSQLDITEMLTRGDGHRFRAGGNHNAQCQLQVDTGVQCGDYVQLWFFDKDIDACSP
FWYGGCGGNANRFSTEHECLRTCGRRNPNVLLKPKRPSSLSKDDCFLGQDQGNCDKYRTM
WFFDTEQNKCARFWYSGCGGNNNRFNTRDECENLCLSKRQ
NT seq
7683 nt
NT seq
+upstream
nt +downstream
nt
atggagggagggcggagtcttctcctcatcctcatcttggcatcatgtttctatggcaat
ggtgctcaaagaacagaatgtgccaccgttggtgacattgttttcctggtcgacggctcc
tccagtatcggtaccaacaactttcagcaggtccggctctttctgcgcagcttcgcctca
ggtctcgatatcggccctgacaaaatccgaatcggcttggctcagtacagcaacgatcct
caccaagagttcctgctgaaagaccacatggaaaagacagcgctactggctgccttggac
tcttttccctatcgaaccggtggcacagaaacgggaaaggcaatcgacttcctacgcaca
cagtatttcaccaaggaggcaggcagtcgagccaatcagcgggtgccccagatcgctgtg
gttatcacagatggggattccacagatgatgtgacagtgccagcgcagagtctgaggaaa
cacggggtcattgtgttcgccatcggggtcgggaacgctaaccagaatgagcttgagtct
atcgccaaccggccgccgaagcgcttcaagttcaccattgatagtttccaggcgctgcag
aggctgacaaaggggctcctgcaaactatgtgtgtttcaatagaggaccagcaccaagcc
ttgaaagaaaagtttgcagatattttctttctggtggacagcgggttgaaccctacagac
ttccagcacgtaaagaccaccctcagcagactggtcaaccaaatgaactttaacgcttac
acctatcgtttgggtctggctcaatatggtcaaaacatcgatgttaaattccttttcaaa
actcatcaaaccaaagaagaattactgaaggcaattaaagctgtgaacaaccgcaggctt
caacccaacgaggtccataatctgggcagcgcgttacagtacgcgtacaaaaactttttc
acagcggaggcaggaagcaggacagaccaaagcttccgccagtacctggtcgttgtaagt
gggaaggattcaaatgatcctttttataaggaggcccgtctgctcaagtcagctggaata
tacataatcacctttagcgccggtgcgtccatgaaagaactaagtgtcctatctagtcca
aggtactcgtatcagtccgtaagcaatgccttaccgaacctgaggacgatcctagaaaaa
aaacaggaggtgatggaggttactgatgattgcaaagtggctaatattgcggacatcgtg
ttcatcattgatgaatccggaagcatcggaagccccaactttcagctcatgcgtagcttc
ttgcattcacttatcagcggtctgcaagtggcttcaaacagggtccgagtggggattgtg
atgtataacgtggagccgatggcacaggtgttcctcaacacctttaaagacaaaagtgaa
ctgcttgatttcattaaaattttgccttaccatggaggtggcaccaacaccggagtggct
ctaaacttcaccctgcaggaggttttcatcaaacagagaggaagcaggaaggaccttggt
gtccagcaagtggcagtggtgatcactgatggtaaatctcaggatgaagttagcagcccg
gcagctaatctccgtcgggctggtgtcaccgtttatgccgtgggtgtcaaagatgctgac
aaggcccagctggaccagatcgcttcttatcccaccaacaagcacacgttcatcatagac
agtttcacgaagctgaagacactggaagcgagtctgcagcgaattctatgccagaacgtc
gtccaacgagcattctcagtcaatagcagaagagctagcatcagagagggctgccgacag
acggatgaagcagatgtcttcttcttgattgatcactcaggaagtatccaccctgctgac
ttccatgacatgaagaagttcatcatcgagttcctccatacttttcgcattgggccgcag
cacatccgtatgggggtggtaaaatttgcagattcgcctcaattagaattcgatttgcaa
gcctactcagatgtgaagtcactggaggatgccatcctcaatattaaacagatcggaggt
ggaacagagacgggaagagccctagaattcatgggccctcagtttgaccaagcgctggcc
acccgtgggcacaaagttaaagagtatctggttgttattactgatggaaaatccaccgac
aaagtcaaggcccctgcagacaagctgagatcacagaatgttgtggtctacgcaatcggg
gtgaaagacgcagatgaaaatcagttgctggagatttctggtgatcctcagaggactttc
tttgtcaataattttgatgctctgaggcccattaaggatgacatcatcacagacatctgc
tctcaagaagtctgcaaagatataccaggagatcttattttcctgattgacagctcaggg
agcatctatcaggaggactacaagaaaatgaaagacttcatgaagtcggtcattaaaaag
tccattgttggcaagaatgaggtccatgttggtgtcatgcaatacagcactatccaaaaa
ctggtattccccctcaaccagtactacaccaaggatgaactgtccaaagccattgatgaa
atgcagcagattggtgggggcactcacacaggtgaagccatcacagacgtttctcagtac
tttgacgcccggaacggaggccgtccggacttgaagcagaggttggtggtggtaacagat
ggtgagtctcaggatgaggtgagacgacctgcagaggacctgagagccaagggggtaatt
gtctattccatcggtgtggtggccgccaacaccagccagctgttggagatcagtgggacc
cccaaccgaatgtatgccggccgggactttgatgctctgaaggacctggagaagcagatg
gccatggagctgtgtgatccagaccgagagtgtaagaagacggaaaaagccgacataatt
ttcctggtggatggctccaccagcatcacacaacccaagttccacagcatgctgaaattt
atggcttcgatggtgaaccagacgacagtcggctctgacttgacgcgctttggggtcatt
ctttactccaacgatgcaaattccatctttactctcaaacaatattcagccaagcaagag
gttctccgagcaatcgcagcactaaagtctcctcttggagatacctacactgccaaggct
ttgacctacagtctacagttctttaatgaagaacacggcggtcgggctgcactccaggtg
ccacagattctcatggtgatcacagacggagatgcaacagatcgcaataaactggttcca
ccttcattagcactgcagaaccaaggtattagtgttttcagcattggagtggaaggagcc
aataagacacagctagagatcatggctggaggagacagatcaaaagttttctatgttgac
aactttgatgctctggaaaatctctacaagaacatcacccacgttctctgcaattctact
aaaccagcttgtgagaaacagaaggctgatctagtcttcctactggaccagtctggcagc
attcaaccaaatgactacatcaccatgaagaagttcaccgtagacctcattaagagtttc
aaagttagcaaagagtttgtccacgtaggacttgctcagttcagcagcagtttccaccat
gagttttacctcaaccaattctttactgaacaagtcatcagcaagcacgtcatggacttg
cagcagctcggcggtggtaccaacatcggactggccctgaactccatccgtgaatacttt
gaggtgtcacgtggaagtcgcagtcctgaaggaatctcccagaacctggtgctgatcaca
gatggtgaatcgcaagatgacgtggaagatgcggctcggctcctcaggagtctgggggtg
gaggtgtttaccattggtattggaaacgcccatgacctagagctgctgcagatctccggg
agtccagagagagtctttactgtaaagagctttggcaacttggaaaacatcaagcaaaaa
gtggttgacaccatctgcgaatcaaaacttatccccgatcgtccagactgcagcattgac
atcgccatgggatttgatatttcgaaaagatctggagcttctggcgagatgctcatcact
ggtcacgccgccctccagactttcctgccggagatcgcccactacgtgtcctccatcaaa
ggcttgtgctgtgccggtccaacgcccgtcaagaccaacatgggttaccgagtggttaga
caagacggaagtacgctgtacgatttcaactttgaggcctacagcagaggtgtggtggac
aaagtcatgactatatctctggccgagccgacttacttcaacacagctctgctgaagtcc
ttccaggagaagttcagtcaatccggagctggcgtgaaggttcttgtgatcttctctgat
ggcctcgatgaagatgtgatgaagctggagcaggaatcagagctgctgcgaaagtcaggg
gtcagcgcgctgatggtggtggccttggagggcaccaacagtctgggccagctgcagatg
gtggagtttgggcgtggcttcggctacaaggttcctctcagcatcaatatgcagagcatc
ggcagcaccctcctcaagcagattgacatggtgtcggaccgggagtgctgcggcgtcatg
tgtaaatgttcaggacacgaaggtgtccgtggttctcgagggccgccagcgtcaaaggga
gtgactggacagaaaggtcacccaggattcccgggggaggagggtgtcgccggtgaccgt
gggcggcccggaccaagtggtcctcaaggtgtgcagggttgttctggtccaagaggactg
ccgggtaaccgcggtctccgtggaaacaggggtgaaaacggagaagatgggctcaacggc
gttgacggtgaacagggagacgcaggaaatgatggaagtcgtggagagagaggacacgct
ggaaacccgggtatcccaggtatcagaggcgagccggggcttaaaggacagcgaggactg
agaggagatccgggagaacctggtgctcagaatacagttccaggacccagaggagaggct
ggtaatccagggttgccgggacaaccgggagtggacggcncggccggcgagagtggcgtc
atcggagaaccgggtccagatggaagaagagggccaatgggtgaaaagggttcgattggg
aatccaggagaagcaggactcccaggcctccctggagcttcaggtccattggggtccaga
ggggccagaggtccaccaggacaaccaggcatccaagggcttcctggacctcagggtgga
ccaggaccagctgggaggccaggagtagccggacgacgtggcaccagtggacccaagggt
gaacctggtgatcccggtgtgcagggtgttccaggacctcagggaccacgaggactgcag
ggtgaggatggaagagatggttacggatcacctggacctgtgggcattaagggtgatcct
ggtttccctggttacacgggactactgggtgagagcggcctacaggggcctaaaggaaat
ccaggacctaaagggaacacaggccaaactggaaaagcaggttttccaggggacccagga
ctttctggagagccaggttattcaggacacaggggtcccagaggtcctcctggaagcaaa
tctatgactgagtgtcagatgatcacctacatcagagacaactgtgcctgttccagcaat
caccctgggtgcccggtgtaccccacagagctggtgattggtctggacatgtcccagaat
gtgacctcagcagcctttgagaaacaacgcgctgctgtcctctccctgatagaggacatc
gccatcgccgagagcaactgtccgactggcgcccgcgttgctgttgtgggctacagcagc
tacataaaacacctgatccgcttccaagattaccaccgaaagaagcagctgattgagttt
gtgaagaacatcgccatggagaggacaggcaacagccgcaagctgggcaccgccatgcgc
tttgtgggtcagaacatcttcaagcgggtcagagctggagccatgacaagaaaggtggct
gttttcttcagcggcggggccacgcaggacgtcagcgacgtcgtcaccgctgtgatggag
taccgcggcctcaacatcgtccccgccatcgtctccctgagaaacgaccctgccctgagc
caagcgatggaggtggatgactcattaaactccatctttgctgtgttgggtagagacgcg
gtcgccgacctgtggaaggtgaagaactgtgcaatgtgctacgatccctgtaagcgtacg
gagcagtgttcgttcatccaggagaaggttctgcctcaggaggccgacctggacctggcc
ttggtggtggacggctccagggagattcaagccgatgagtttgccggcattcagcagctt
ctgggctctgtggtggagcagctagctgtgagccctcagccgcgcaaacccggaaaccag
gcccgcgtggccgtcatccagcagagcagcgcccaggttattaagcccgagtttggactg
caggcctatcagaaccaaaacctgatgaagagacaccttgttcagaacatgcagcaacta
agcggctcctcggcacttggtcacactctggaatttgccctgaacaaggttcttctaaag
gccactcaccctcgccagaggagggtgttgttcactgtggtgggctcccagacggcccaa
gaggactcagccaagctgcagtacatctcccagaaggccaggtgtgagggtgtggccctg
tttgtggtcacagttggtaatcgctacaatcggacggaggtggaggagatagtcagcaca
cccgtccaacagcacctgattcatgtgggcagcatggaggctggtgaacaagcctacatc
cgccgtttcttcagggtattcgtcaatgccctcagcaagggaatgaacgcttatccaccc
ccgaacttgaaaaaatcatgtaaccagatgttgggccaaggtggtgggcagtcctccata
cctggtcaggacttggtggaggtggagctaaaggacgagggcttccgggagcatatgaga
ggtcaggcagacaccagccagctggacatcactgagatgctgacccgaggagatggacac
agatttagagccgggggcaaccataatgcccagtgtcagctgcaggttgatactggtgtc
cagtgtggggattatgtccaactatggttctttgacaaagacatcgatgcatgctctccc
ttctggtatggtggctgtggcggcaacgccaaccgctttagcacggagcatgaatgtttg
aggacgtgtggccgccgcaatccaaacgtcctgctgaagccaaagagaccgagctccctg
tccaaagatgactgcttcctgggccaggaccaggggaactgtgacaaatacagaacgatg
tggttcttcgacacggagcagaacaagtgcgctcgcttttggtacagcggttgtggaggc
aataacaaccgcttcaatacgcgggacgagtgcgagaacctctgtctgagcaaacgccaa
tga
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integrated database retrieval system
