Takifugu flavidus (sansaifugu): 130535801
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Entry
130535801 CDS
T09160
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130535801 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130535801 (cnot1)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130535801 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130535801 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130535801
NCBI-ProteinID:
XP_056907069
LinkDB
All DBs
Position
13:10119523..10140260
Genome browser
AA seq
2374 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVLLISKPNFISSLCYAIDNPLHYQKSLKPSAHFFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRAFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELARTMMESSLAEFMQEVGYVFCASLDECRTIIHQYGVREVTACQVARVLGMMART
HSGLSDGIPLQSISSPGSGIWSDGKDKNDGSQPHTWNVEVFIDVVKDVNPSLNFKEVTYE
LDHPSFLIRDSKGLHIVVYAVQRGLGMEVFPVDLIYRPWKNAEGQLSFVQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFGFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLPPDKDQPKSSQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLAGMGSL
NLGGTAASHNPGFPTSLSSAFSNPQSPAKAFPALSNPNPSTPFGGIGSLSTQLSGPLSSG
IGSSLGMQTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQR
IYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITA
CLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYCQH
LASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAHVQAQTQQPGGPKAPP
PSQPSTLVTTTTTTTTTVKTPTITRPTPSNFKKDVPPSINTTNIDTLLVATDQTERIVEP
PDNVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSIEPNFHSLYSN
FLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPIL
YTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMAIMNVLAELHQ
EHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNLEEQLSAPKKESKAPEESLA
VPTAGEFVPFAAPPSTPAATTASCAATGPPTPQFSYHDINVYALAGLAPHININTSVSLL
QAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRLAAHH
MMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRTPTPQQREMMEEAAARISQDNCELA
CCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGG
VDAKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCIADLEQH
LHAITPTLAMNPLTQALRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADADLLL
RYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQY
DLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHSRANA
PEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL
YHXAAAGRDSTKAFSAFLAQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPA
ASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQ
TEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELI
SHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVL
LHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAP
RILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYV
GTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTH
YFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDF
VHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtcaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggattttagtggagat
ggtaaaagcagtggaaaggattttcaccagacacagtttctgatccaggagtgcgtgttg
ctgatatccaagccaaattttatctcttctctgtgttacgccattgacaatccccttcac
taccagaagagtttgaagccatcagcccacttttttactcagttgagtaaagttcttaaa
ctcagcaaggtccaagaggtgatatttgggcttgctttgctcaactccagcaacacagac
cttcgtgcttttgctgcacagttcatcaagcagaagcttccagacctcctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggcttccaagacatcgccatagaggtg
ctgcacctgctgctctcccatctactgtttggtcagaagggagccagtggggtgggacag
gaacagatcgacgccttcctcaagaccctttgtcgagatttcccccaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatcctg
ccagactcaggagagttagcgaggaccatgatggagagttctcttgctgagttcatgcaa
gaggttggctacgtcttctgtgctagtctggatgagtgcagaaccataatccaccagtat
ggggtgagagaggtgacggcctgccaggtagccagggtgctgggcatgatggcacggacc
cactcgggcctctccgatggcatccccctacagagcatctccagcccaggaagtggcatc
tggagcgacggcaaggacaagaacgacggctcgcagccacacacgtggaacgtggaggtt
ttcatcgacgttgtgaaggatgtgaatccgagcctgaacttcaaggaggtgacgtacgaa
ctggatcatccgagcttcctgatccgggacagcaagggcttgcacatcgtggtctatgct
gttcagagggggctgggcatggaggtcttccctgttgacctgatctatcgaccctggaag
aatgccgagggacagctgtcgtttgttcaacactccttgatgagcccggaggtgttttgc
ttcgccgactacccctgccacactgtggccattgacatcctgaaggcccccccagaggat
gacaacagggagatcgccacctggaagagtctggacctggtggagagtctgctcaggctc
tccgaggtgggccagtacgagcaggtgaagcagctctttgggtttcccatcaaacactgt
ccggacatgttggtgctggcgttgctgcagatctccacgtcctggcacacgctgcgccat
gagctcatctccaccctgatgcccatcttccttggcaaccatcccaactctgccatcatt
ctgcactacgcctggcatggacagggccagtctccctccatccgccagcttattatgcat
tccatggcagagtggtacatgagaggggagcagtacgaccaggccaagctgtctcgcatc
ctcgacgtggcccaggacctgaagtctctctccatgttgctgaatgggaccccgtttgcc
tttgtcatcgacctggctgcactcgcatctcgtcgcgaatacctcaaacttgataaatgg
ctaactgacaagataagagaacacggcgaaccgttcatccaggcgtgcgtgaccttcctg
aagcgccgctgtccctctataatggggggtcttcccccagacaaggaccagcccaagagt
tcccagctgcctccggagaccttggccaccatgctggcctgcctgcagtcctgtgctggg
agcgtttcccaagagctgtcggagaccattctcaccatggtggccaactgcagcaatgtg
atgaataaagcccgacagccgccaccaggggtcatgcctaaaggacgtgcccccagcacc
agcagcttggatgcaatatctcccgtacagatggaccctctggctggtatgggatccctg
aacctgggaggcacggcagcgtcacacaatcctgggttccccacctccctgagctctgcc
tttagtaacccccagtctccagcaaaggctttcccagctctgtccaaccccaatcccagc
acaccttttggaggaattggcagcctgtctactcagctctctggtcctctgagctcaggt
attggatcgagtctgggcatgcagactgtcaacacggacccttttggcaccaggaagatg
agcacaccaggcctgaacccaccgacctttcagcagactgacctctctcaggtttggccc
gaagcaaaccagcactttagtaaggagatagatgatgaagccaacagctacttccagcgg
atttacaaccacccacctcacccaactatgtctgtagatgaagtgctggagatgctgcag
agatttaaggattcaaccatcaaacgggagagagaagtctttaactgcatgctgcggaat
ttgtttgaggagtacaggtttttcccccagtaccccgacaaggagctgcacatcactgcc
tgcttattcggtggcatcattgagaagggcctcgtgacctacatggccctgggcctggcc
ctccgatatgtcctggaggctttgaggaaaccatacggctccaaaatgtattactttgga
attgctgctctggatcgctttaagaacaggctgaaggactaccctcagtactgccagcac
ctggcttctatcgcacacttcctgcaattcccccaccatttacaggagtatattgaatat
gggcaacaatcccgggacccaccagtaaagatgcaaggctccatcaccactcctggcagt
ctggcactggctcacgtgcaggcccagacacagcagcccggaggccccaaagctccgccg
ccgagtcagcccagcacgttggttaccaccaccaccaccaccaccaccacagtcaagacg
cccaccatcacgaggcccacgcccagcaacttcaagaaggacgttcctccctcgataaac
acaaccaacattgacaccttgttggtggccactgaccagactgagaggattgtggagcca
ccagacaacgtccaggagaagattgccttcatctttaacaacctttctcagtccaacatg
acacagaaggtggaggagttgaaagagacggtgaaagatgaattcatgccctgggtgtcc
cagtacctggtgatgaaacgtgtcagcattgagcccaacttccacagtctctattccaac
tttttggatactttaaagaacccagagtttgtcaaaatggtcctaaatgagacgtacagg
aatatcaaggttctgctgacatcagacaaggcagcagccaatttctctgaccgctctctg
ctgaagaacctcggccactggttgggcatgattacactggccaaaaacaagcccatcctt
tacactgatctggaagtgaagtctctgctgctggaagcatatgtgaaaggacaacaggag
ctgctgtacgtagttccctttgtggccaaagttttggagtccagtttgagaagcatggtc
ttcagacctcagaacccctggaccatggccatcatgaatgttcttgctgagctccatcag
gagcatgacctgaagctgaacttgaagtttgagattgaagtcctgtgtaagaatctgtct
ctggacatcaacgagctgaaacctggaaacctgctgaaggacaaagacaagctgaagaac
ctggaggagcagctttctgcaccaaagaaagagagcaaggctccagaggagtcgttggcc
gttcccacagcaggagaatttgttccatttgcagctcctccatcaacaccagctgccacc
acagcgtcctgtgcagccacggggcccccgaccccccagttcagctaccacgacattaac
gtgtatgccttggccggcctggctccacacatcaacatcaacaccagtgtctctctgctg
caggcgcatcctcagctgaagcagtgcgtgcggcagtcggtggagcgagccgtccaggag
ctggtgcaccccgtggtcgatcgctccatcaaaatcgccatgaccacctgtgagcagatc
attaggaaggactttgcactggactcggaagagtcgcgcatgcgtctggcggcccaccac
atgatgagaaacctgacggctggcatggccatgatcacgtgccgggagcctctgctcatg
agcatcgccaccaacctgaagaacagctttgcagctgctctcaggacgccgacccctcaa
cagagggagatgatggaagaggctgcggccaggatttctcaggacaactgtgaattggcc
tgctgctttatccagaaaacggccgtggagaaagccgggcctgagatggacaagagacta
gcaacagagtttgagctgcggaaacacgcgcggcaggaaggccgccgctactgtgaccct
gttgtgctgacctaccaggcagaacgtatgcccgagcagatcaggctcaaggtgggaggg
gtggatgccaagcagctggctgtgtatgaggaatttgccaggaatattccagggttcctt
cccagcaatgatctttcacagcccaccggctttttggctcagcccatgaagcagcaggca
tgggccacagacgacgtggctcagatctacgacaagtgcattgcagatttggagcaacac
cttcacgccattactccaaccctggccatgaacccactaacccaggccctgcgcagcctg
ctggaagctgtggtcttggcgagaaactcaagggatggaattgctgcgctcggcctcctg
cagaaggctgtagaaggtcttctggatgctacgagtggggctgatgcagacctgctgctc
cgctacagggaatgtcacctgctggtcctgaaagccctgcaggacggacgcgcctatgga
ccacagtggtgcaataagcaaatcaccaggtgtctgatagaatgtcgtgatgagtacaaa
tacaacgtggaggcagtggagctgttgatccggaaccatctggtgaatatgcagcagtac
gacctccatctggcacagtccatggagaacgggctgcactacatggccgtggccttcgcc
atgcagctggtgaagctgctgctggtggatgagcgcagcgtcagccacgtgaccgaggcc
gacctcttccacaccatcgagaccctcatgaggacctgcgcccactccagggccaacgca
cctgagggccttccccagctgatggacgtcgtccgctccaactacgaggccatgatcgac
cgggcccacggtggacccaacttcatgatgcattcaggcatctctcaggcttcggagtac
gacgacccgccgggcctgagggagaaggcggagtacctgctcagagagtgggtcaacctg
taccacntcgcagctgctggcagagacagcaccaaggccttctctgcttttttggcgcag
atgcaccagcagggaatcctgaagacggacgacctgatcaccaggttcttccggctttgc
acagagatgtgcgtggagatcagctatcgtgcccaggcggagcagcagcacaacccggcg
gccagcgccgccatcatcagagccaagtgctaccacaacctggacgccttcgtgaggctg
atcgccctgctggtcaaacactccggagaggccaccaacacggtgaccaagatcaacctc
ctcaacaaggtgctcggtatcgtcgtcggggtgctgatccaggaccacgatgtccggcag
acagagttccagcagctgccctaccatcggatattcatcatgttgcttctggagctcaac
gcccccgagcacgtgctggagaccatcaacttccagacattaaccgccttttgcaacacc
ttccacatcctgaggcccaccaaggcgcctggcttcgtgtacgcctggctggagctcatc
tctcaccgcatctttatcgccaggatgctagcgcacacgcctcagcagaagggctggccc
atgtacgcacagctgctcatcgacctcttcaagtatctggcgccgttcctgaggaacgtg
gagctcaacaaacctatgcaaatcctgtataaggggacgctccgagtgctgctggtcctg
ctccatgatttcccagagttcctgtgtgactaccactacggcttctgtgacgtgattccg
ccaaactgcatccagctgcgcaacctcatcctgagtgccttcccacgtaacatgaggctg
cccgaccccttcacccccaacctgaaggtggacatgctgagtgagatcaacatcgctcca
cggatcctcaccaacttcacgggcgtcatgccctcccagttcaagaaggatctggactcc
tacctgaagacgcgctcacctgtgaccttcctgtctgagctgcggagcaacctgcaggtg
tccaacgaaccaggaaaccgctacaacatccagctgatcaacgcgctggtgctgtacgtg
ggcacccaggccatcgcccacatccacaacaaggggagcacgccgtccatgagcaccatc
acccactcggcccacatggacatcttccagaacctggctgtggacctggacacggaggga
cgctacctcttcctcaacgccatcgccaaccagctgcgctaccccaacagccacacccac
tacttcagctgcaccatgctctacctgttcgccgaggccaacaccgaggccatccaggag
cagatcaccagggttctgctggagaggctgatcgtgaaccggccgcacccctggggtctc
ctcatcaccttcatagagctgatcaagaaccccgccttcaagttctggagccacgacttt
gttcactgtgccccggagatcgagaagctgttccagtcggtagcccagtgctgcatgggc
cagaagcaggcccagcaggtgatggagggcaccggagccagctag
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integrated database retrieval system
