Tinamus guttatus (white-throated tinamou): 104567197
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Entry
104567197 CDS
T08560
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104567197 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgt03000
]
104567197 (KDM2B)
04121 Ubiquitin system [BR:
tgt04121
]
104567197 (KDM2B)
03036 Chromosome and associated proteins [BR:
tgt03036
]
104567197 (KDM2B)
Enzymes [BR:
tgt01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104567197 (KDM2B)
Transcription factors [BR:
tgt03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104567197 (KDM2B)
Ubiquitin system [BR:
tgt04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104567197 (KDM2B)
Chromosome and associated proteins [BR:
tgt03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104567197 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104567197 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
104567197
NCBI-ProteinID:
XP_010212301
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MDVNTQRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVD
NMWPQHLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKI
FWLIPPTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPV
DSLVFGGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHL
SREYQQESMLIDAKRKRSVDSCSSDSWLDMDEESCDAHIREEKDDGLDGNAKALADGSSS
PNSTHSEGKEGAGRKQKATAMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKW
THLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISG
VPVVSWPKKTTKNRAVGRPKGKLGAASAVKLAANRTTAGARRRRTRCRKCEACLRTECGE
CHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLM
ECSICNEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNL
PGSLLKEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKAQVDSILRRKSDEVHLRRK
RKFEKPQEPAMRKRRRSWKAPDERAALLKPLRRLKQEPEDELPEAPPRAKESDQSRSSSP
TAGPSTESAEARDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSE
PESENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPGLRSTPRGIARPPPSLSPPKCI
QMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWC
CDKRLWTKIDLSHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLL
SGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETL
SSSSGKEQFCGSCPIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSK
LNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRY
CKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaatacccaaaggggagtggaaatgagcatgtcccagtttgtgaggtactac
gaaacaccagaggcccagcgtgagaaactctacaacgtcatcagcctggagttcagtcac
acgaagctggagaacatcgtcaagcgccccaacgtggtggacttagtcgactgggtggat
aatatgtggccacagcacttgaaagagagacagacggatgcgaccaatgctatttcagag
atgaaataccccaaagtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgat
tttcacattgatttcggtggcacttcagtgtggtatcacgttttccgtggggggaagatc
ttctggctgattccgcctactctgcagaatctagaactttatgaagaatgggtcctctca
ggaaagcaaagtgatatcttcctgggagacagggtggagcgatgccaaagaattgagctg
aaacaaggctatacgttcttcattccttcagggtggattcatgcggtttatactccagta
gattctctggtgtttggtggaaatatcctgcatagctttaatgttcccatgcagcttcgc
atctatgaaattgaggacagaacaagggtgcatgccaaattccgctatcctttctactat
gagatgtgctggtatgttctggagagatacgtgtcctgtgtgacccagcgctgccacctc
agcagagagtaccagcaagaatccatgttaattgatgcaaaaagaaagcgcagcgtagac
agctgttcatcagattcgtggttagacatggatgaagaatcctgcgatgcccatatccgg
gaggagaaggacgacggcttggacgggaacgccaaagccttggcggacggctcctcctcg
cccaacagcacccactcggaagggaaggaaggtgcagggagaaaacagaaagctacagcg
atgagatacctgaaaagaactttgtctaatgaatcagacgacagtgtaaaatcaacgacc
cccacggactatcccaaaacgccaacagggtctccagctacagaagtttcaaccaaatgg
actcacctcacagaatttgaactgaagggtttaaaagccctggtggaaaagcttgaatct
ctcccagagaacaagaagtgtgttccggaaggtatcgaggatccccaagctctcctggag
gacatgaagaacattctgaaggaacacgctgacgatgaccaaaatcttgccatttcgggt
gtccctgtggtcagctggcccaagaagaccacaaagaacagggcggtgggccggcccaaa
gggaagctgggcgccgcgtccgccgtgaagctcgccgctaaccggacgaccgcgggcgcc
cggcggaggaggacgcgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggcgag
tgccacttctgcaaggacatgaagaagttcgggggccccggcaggatgaagcagtcctgc
atcatgaggcagtgcattgcgccggtgttgcctcatactgccgtgtgtctggtgtgtgga
gaagctgggaaagaggacactgtggaagaggaggagagcaagtttaatctcatgctaatg
gaatgctccatttgtaatgaaataatacacccaggatgccttaaggtgaaggaatcggac
ggggtggtgaacgacgagctgccgaactgctgggagtgtccgaagtgcaaccatgccggg
aaaactggaaaagcgtacaagcaaaagcgcggacctggattcaaatacgcatcaaatctc
ccaggctcattgctgaaggagcagaaaatgaacagggacaacaaggaagtcacagacgcc
gcgaagcggaaaggcgactgcgaagagacccccaggcggaaatccgaggaacattccaaa
aaggctcaagttgactccatcctgcggagaaagtcggacgaggtgcatctgcggaggaaa
aggaaatttgagaaaccccaggaacctgctatgagaaaacggcggcggtcgtggaaggcg
cccgacgagcgagctgccctgctcaagcctctgcgtcgcctcaagcaggagcccgaggac
gaactgcccgaggcgcctccgcgcgccaaggagagcgaccagtcgcggtcgagctcgccc
acggcggggcccagcaccgagagcgccgaggcccgggacaagaagaagttcaagatgagg
cggaaaaggcggctccccaataaggaactgagcaaggagctcagcaaggagctcaaccag
gagatccaaaaaaccgagaacagccttgccaatgagaaccaccaacccatcaaatctgag
cccgagagcgagaacgaggagcccaagcgcgccctgaacaacagcgagagactccacagg
ttcagcaagggcttgaacgggactccccgggagctgcggcaccagctcatccccggcctg
cggagcaccccccgcggcatcgcgcggccgccgccttcgctctctcctcccaaatgcatc
cagatggagcggcacgttatccggccgcctcccatcagcccccctccggactcgctgccc
ctggacgacggggccgcacacgtgatgcagagggaagtctggatggctgtctttagctac
ctcagtcatagagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgc
tgtgacaaaagattatggaccaaaatagatttaagccattgtaaatccatcactccactt
atgcttagtggcattattaggagacagcctgtaacccttgatcttagctggacaaatata
tctaaaaagcagctgagttggcttatcaacagactcccaggtctccgagacctgctgtta
tcagggtgctcatggatagcagtgtcggcactttgtagttccagttgtcctttactccga
accctggatgtgcagtgggcggaaggattgaaagacgcacaaatgcgagacctcttgtca
ccacccacagataaccggccaggctgcaacgggtgtactttagagagtatggaaacactt
tcttccagttcagggaaggagcagttctgtgggtcatgccccattcgcccggatatcagc
tcaggtcagattgacaaccggagtaaactacggaacatcgttgaactgcgtttggctggt
ctggatatcacggatgcttctttacgactgatcattcggcacatgcccctgctttccaaa
ctcaatcttagttactgtaatcatgtgacagatcagtctatcaacctgctgactgcagtc
ggaaccaccacgcgggattcgttaacagaaattaatttatcagactgcaataaggtgact
gaccagtgcctgtcctacttcaaacgctgtggaaacatctgtcagatcgacctgaggtac
tgcaagcaggtgaccaaggagggctgcgagcagttcatcgcggagatgtccgtaagcgtt
cagtttgggcaagtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
