Taeniopygia guttata (zebra finch): 100224758
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Entry
100224758 CDS
T01082
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X6
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100224758 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100224758 (CNOT1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100224758 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100224758 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
100224758
NCBI-ProteinID:
XP_012425781
Ensembl:
ENSTGUG00000005919
LinkDB
All DBs
Position
11:13490726..13545940
Genome browser
AA seq
2375 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPNLDFKVVTYE
LDHPGFQIRDSKGLQIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSPELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPGGL
TTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQHNP
AANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVR
QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL
ISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLV
LLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIA
PRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLY
VGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcatacgccattgacaatcccttgcac
tatcaaaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaagtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgttgaagaatgtcgcaacataatcatgcaattt
ggtgttcgggaagtcacagctgcccaggttgccagagttttggggatgatggctcgaact
cattcaggattgacagacggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgacggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctaacctggacttcaaagtagtaacgtatgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcaaattgtcgtttttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttactgcagatcaacacgtcctggcacaccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatgggcagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgatcaggcaaaattatcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaggatcagcccaaaagt
gctcagcttcctccggaaaccttggcaactatgttggcctgtctgcaagcttgtgctggg
agtgtttctccggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcgacagcccccacccggagtcatgcccaaaggacgcccacccagcgcc
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttgggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcgttcccacctctttccacccaa
aaccagacaaccggtttcagtggcatcggaggactttcttcacagcttccaggtggtctt
actacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaacaat
gacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcactttagc
aaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccaccacac
ccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaacatt
aaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgcttc
tttccccagtacccagataaagagctgcacataacagcctgtctcttcgggggcatcata
gagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagatcct
cctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggctcag
gcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtgacc
acctcaaccaccaccaccgttgcaaaaaccattacaatcacccgaccaactggagtcagc
ttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagtagca
acagatcaaacagagaggattgtggaacctccggagaatgttcaggaaaaaattgctttc
atcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaactgaaggaaaca
gtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagtatt
gagcctaactttcacagtttatattcaaacttccttgacacacttaagaatccagagttt
aataaaatggttctgaatgaaacctacagaaatatcaaggtgctgttgacatcagataaa
gctgcagccaacttctcagaccgttccttgttaaaaaaccttggtcactggctgggaatg
ataacgatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcactactg
ctggaagcatacgttaagggacagcaggaattgctttatgtagtgccgtttgttgccaaa
gtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaatccatggacaatggcc
attatgaatgttttagctgagctacatcaggaacatgatctaaaattgaatctgaagttt
gagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctggaagt
ctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaagaag
gatgtgaagcagccggaagagctaccacccatcacaacaactactgcttctacaactcca
gctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcatgat
atcaatgtctattctttaggagggctggctccacacattaccttaaatccaacgattccg
ctgttccaagcgcacccgcagctgaagcagtgtgtgcggcaggcgatcgagcgggcagtg
caagacctcgtccacccggtggtcgacagatccatcaagattgccatgacgacctgtgag
cagatagtcaggaaggacttcgccctggattcggaggagtcccgcatgcgtgtggctgct
caccacatgatgaggaacctgactgctgggatggccatgattacctgcagggaacctttg
ctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcctcc
ccacagcagagggaaatgatggagcaggcagctgcccagttagcacaggataactgtgag
cttgcctgctgctttatccagaagacagctgtggaaaaagcaggccctgagatggacaag
aggctcgcaactgaatttgagctcagaaagcatgctaggcaagaggggcgtcgctactgc
gatcctgttgtgttaacataccaggctgagcggatgccagaacagatcaggttaaaggtt
ggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccctggc
ttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaagcaa
gcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaactggagcag
cacctgcagtccattccacacaccctggccatgaatcctcaagttcaagcactgcgtagt
ctcttggaggcagtggtagtggctcggaactcccgagatgctattgctgcacttggacta
ctgcagaaggctgtagagggcttgctggatgccaccagtggtgctgacgctgacctcctg
ctccgctatcgtgagtgtcacctgctggtgctgaaggctctacaggatggccgtgcctat
ggatctccgtggtgtaacaaacaaatcactaggtgcctgatcgaatgcagagatgagtac
aagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcagcag
tatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggcattt
gccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccatgtaacagaa
gcagatctgttccacaccattgagacactcatgagaattaatgctcattccagaggaaac
gccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagcaatgatt
gaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttctgag
tatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgggtgaac
ctctaccattcagctgcagcgggccgtgatagtaccaaagcattctctgcgtttgttgga
cagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttccgtctt
tgcaccgaaatgtgtgttgagatcagctatcgagccctggccgagcagcagcacaaccct
gcggccaaccccaccatgattcgagccaagtgctaccacaacctggatgcctttgtgcga
ctcattgcactgctggtgaagcactctggggaggcaaccaacacagtcacaaagatcaac
ctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgttcgg
cagagtgaatttcagcaacttccttaccatcgcatttttatcatgttgctgttggaatta
aatgctcctgagcatgtgctggagaccatcaacttccagacactcacagctttctgtaac
acatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaactg
atctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggttgg
cctatgtatgcccagttattgatcgatctgttcaagtacttggcgcctttccttagaaac
gtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttgctggtc
ttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtgatc
ccacctaactgtattcagctaaggaatctgatcttgagtgccttcccacggaacatgagg
cttccagaccctttcacccccaatctaaaggtggacatgttaagtgagattaatattgct
ccacgaatactcacaaatttcactggagtgatgccacctcagttcaagaaagacttggat
tcctatctcaaaacccgttctccagtcacctttttgtctgacttgcgaagcaacctacaa
gtatcaaatgaaccaggcaaccgctacaacatccagctgattaatgcactggtgctctac
gtaggtactcaagcaattgcacacattcacaacaaaggcagcacaccctccatgagcacc
attacccactcagctcacatggacatcttccagaatttggcagtagacctggatactgaa
ggccggtacctcttcctgaacgccatcgccaaccagctgcggtaccccaacagccacacc
cactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggccatccag
gagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccctggggt
ctccttattacgttcattgagctgataaaaaatccagcctttaagttctggaatcatgag
tttgttcactgtgctccagaaattgagaagttgttccagtcggttgcacagtgctgcatg
gggcagaagcaggcccagcaagttatggaagggactggtgccagttag
DBGET
integrated database retrieval system
