Taeniopygia guttata (zebra finch): 100224767
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Entry
100224767 CDS
T01082
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100224767 (PTCH1)
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
100224767
NCBI-ProteinID:
XP_002194217
Ensembl:
ENSTGUG00000000532
UniProt:
H0YQK3
LinkDB
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Position
Z:12170560..12243652
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AA seq
1443 aa
AA seq
DB search
MASAGNASELETSSSAGGGGHPGRAPRNGGGRRRRTGGNRRAAVPDREYLQRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTTEALRQHLE
SALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLNPA
DPDCPITAPNKNSTKPLDVALVLSGGCYGLSRKYMHWQEELIIGGTVKNSSGKLVSAQAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSAIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVTRVIQVEPQAYAENDNTCYSPPPPYSSHSFAHETQITMQST
VQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSIH
CLEQPCTKWTLSSFAEKHYAPFLLKPKAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTDIV
PRETREYDFIAAQFKYFSFYNMYIVTQKADYPNVQHLLYELHRSFSNVAYVLLEEDRQLP
KMWLHYFRDWLQGLQDAFDSDWETGKITYNSYKNGSDDAVLAYKLLVQTGNHAKPIDISQ
LTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRL
RIPAAEPIEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGISSYPNGYPFLFWEQY
IGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAV
PVVILIASVGIGVEFTVHVALAFLTAIGDRNHRAVLALEHMFAPVLDGAVSTLLGVLMLA
GSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGQDRLPTPSPEPP
PGTVRFALPPGHTNNASDSSDSEYSSQTTVSGISEELHQYEATRGPGAPVHQVIVEATEN
PLFARSGVVQPEARHQPSPRLQLNPELSAQQPWQQGRQPRREAREGPRPPPYRPRRDAFE
ISAEGHSGPSSSRDRLGHKAHSHSVRSPVFGAAGASGAAYCQPITTVTASASVTVAVHPA
LHGHSSWGASFPSYEGHHEAGHAPFEDPHVPFNVQCERRNSKVEVIELQDVECEERIPGN
SSQ
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggccggtaacgcgtcggagctggagaccagcagcagcgcgggcggcggaggc
caccccggccgggcgccgagaaacggcggcgggaggcggcgaaggactggagggaatcgg
cgcgcagcggtgcctgaccgggagtatctgcagcgaccgagctactgcgatgcggctttc
gccctggagcagatttcaaaggggaaggcgacgggacggaaagcgccgctgtggctgcga
gcaaagtttcagagactgttgtttaaactgggctgttatatacagaaaaactgcggaaag
tttttggttgtcggcctcctgatatttggggctttcgctgtaggattaagggcagctaat
ctcgagaccaacgtggaggagctgtgggtggaagttggtggacgagtgagtcgggagtta
aattacacacggcagaagattggagaagaggccatgttcaaccctcagctcatgatccag
actccacaggaagatggtgctaatgtactaacaacagaagcactccgacagcaccttgag
tctgcactccaggccagcagagtacatgtctatatgtacaacagacagtggaaattggaa
catttgtgttacaaatcaggagaactcatcacagaagcaggttacatggaccagatcata
gaatatctttatccttgcttaattatcactcctttggactgcttctgggagggagcaaag
ctacagtcaggaactgcctatctattagggaagcctcctttgcagtggatcaactttgac
cccttagaattcttggaagagttaaagaaaataaactaccaagtggagagctgggaagaa
atgctgaataaagccgaggttggtcatggttatatggatcgaccctgcctgaatcctgct
gatcccgattgcccaatcacagctcccaataaaaattccaccaaacctcttgatgtagcc
cttgtattgagtggtggatgctatggactatcaagaaaatacatgcattggcaggaggaa
ctgattataggtggtacagtcaagaacagttctggtaaacttgtcagtgcccaggctttg
caaaccatgtttcagttaatgacccctaagcaaatgtatgagcatttcaaggggtatgaa
tatgtttcacatatcaactggaatgaggacaaggcagcagcaattctggaagcctggcag
aggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctactcagaaggtgctt
tcctttactacgaccaccctggatgacatcttgaagtcattttctgatgtcagtgctatc
cgagtagctagtggctacttactaatgcttgcctatgcctgtttaacgatgctgcggtgg
gactgtgccaagtctcagggtgctgtggggctggcaggagtcttgttggttgcactctct
gtggctgcaggattgggcctgtgctcattgattggaatttcctttaatgctgccacaact
caggttttgccttttcttgctcttggagttggtgtagatgatgttttccttctggcacat
gcatttagtgaaacaggacagaataagagaattccgtttgaggatagaacaggggaatgt
ctgaagcgaacaggagcaagtgtagcccttacatctatcagcaatgttactgctttcttt
atggctgccttaattcctattccagctttgagagcattttcactccaagcagcagttgtg
gtggtgttcaattttgctatggttctgctgattttccctgctatcctgagcatggacctt
tatcgtcgggaagacaggagactggacatattttgctgttttacaagcccgtgtgtcact
agagtgattcaggttgagcctcaagcgtatgcggaaaatgacaatacttgctacagtcct
ccacccccctacagcagccacagctttgcacatgaaactcagattacaatgcagtccacg
gtgcagctgcgcacagaatatgatcctcacacgcaggtgtactacaccacagcagagccc
cgctcagaaatatctgtgcagccagtgacagtgacacaagacaacctgagctgccagagc
ccagaaagcacaagctcgacgagggatttactttcccaattctcagactccagtatacat
tgccttgagcaaccctgtacaaagtggacactttcatcttttgcagaaaagcattatgct
ccgttcctcctaaaaccaaaagctaagattgtggttatttttctttttctgggtttactt
gggctcagcctttatggaactactcgagtgagagatgggctagatctcacagacattgta
ccacgggaaacacgggaatatgactttattgctgcacagttcaagtacttttcattctac
aacatgtatattgtgacacagaaagccgactatccaaatgtccagcacttactttatgaa
cttcacagaagtttcagcaatgtggcatatgttttgttggaagaggataggcagctcccc
aaaatgtggttgcactactttcgagactggctgcaaggacttcaggatgcatttgacagc
gactgggaaactgggaagatcacttacaacagctacaaaaatggttctgatgatgctgtt
ttggcttacaaactcttggtacaaacaggcaaccatgcaaagcccattgacatcagtcag
ttgactaaacagcgtctggtggatgcggatggaatcattaacccaaatgctttctacatc
tacctgacagcctgggttagcaatgaccctgtggcgtacgccgcctcgcaagccaacatc
cgcccacaccgcccggagtgggtccatgacaaagcagactacatgccagaaacacggctg
aggattccagcagccgagcccatagaatatgctcagtttcctttctacctcaacggattg
cgtgaaacttctgactttgtggaggctattgagaaagtgagagctatctgtaataactac
accagcctggggatctccagctaccctaatggttacccatttctcttctgggagcagtac
attggacttcgtcactggctcctcttatccattagcgtggttttagcttgcacgtttctg
gtgtgtgccctctttctcctaaacccttggacagctgggatcattgtggtggtactggct
ctgatgactgtggagctgtttggcatgatgggtctaattggaataaagctgagtgcagtg
cctgtggttatcctgattgcttctgttggcattggtgtggaattcactgttcatgttgct
ttggcgtttttaactgccataggagacaggaaccatagggctgtccttgcattggaacac
atgttcgcaccagtgctggatggggctgtgtccactcttcttggggtgttaatgcttgca
ggatcagagtttgatttcattgtcaggtatttctttgctgttttggcaatcctaaccatt
ctgggagttctcaatggattggtgctgcttcccgttcttctctcattctttggaccatac
cctgaggtttctccagccaatggacaggacagattgcccacaccatctcctgagccaccc
cctggtactgtgaggtttgcactgccacctggccacacaaataatgcatcagattcctct
gactctgagtacagctctcaaaccacagtgtctggcatcagtgaagagctgcatcagtac
gaggccacgcgaggtcctggggcgcccgtccatcaagtaatagtggaagcaactgagaat
cctctctttgcaagatccggtgtggttcagccggaagccaggcatcagccgagccctagg
ctgcagctgaatccagagctcagcgcgcagcagccgtggcagcagggcaggcagcccaga
agggaagcgagggaagggccacgaccacctccttaccgccctcgcagggatgcttttgag
atttctgctgaagggcactcggggcccagcagcagcagggatcgcttgggccacaaggct
cattcccacagcgttcggagcccggtgttcggagccgcgggcgcctccggagcagcctac
tgccagcccatcactactgtgactgcttcggcctccgtcactgtggctgtccaccctgcc
ctgcacggccacagctcctggggagcgagctttccatcctatgagggacaccacgaagcc
ggccacgcgccatttgaggacccccacgtgccttttaatgtgcagtgtgaaagaagaaat
tctaaagtggaagttatagaactgcaagatgttgaatgtgaggaaaggatacctggcaac
agctcacaataa
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