Thermobifida halotolerans: NI17_000765
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Entry
NI17_000765 CDS
T08032
Name
(GenBank) RICIN domain-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
thao
Thermobifida halotolerans
Pathway
thao00040
Pentose and glucuronate interconversions
thao01100
Metabolic pathways
thao02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
NI17_000765
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NI17_000765
Enzymes [BR:
thao01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
NI17_000765
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RicinB_lectin_2
Pectate_lyase_4
Ricin_B_lectin
Beta_helix
Glyco_hydro_28
Motif
Other DBs
NCBI-ProteinID:
UOE21778
UniProt:
A0A399G2G5
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All DBs
Position
complement(176822..178195)
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AA seq
457 aa
AA seq
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MALTALAAVAQSAAAATIDTDAYYVLVNRHSGKAMDVWEWSTDNGGEIRQYDNLGGHNQQ
FRFVSAGDGYYVLVNRHSGKAVDVWEHSTADGAEIRQYDVTHGHNQQFRVVDSAGGDVRL
INRNSGKALEVWEWSTDNGARLSQYTDHDGANQRWQLVKADTNVGTPDPGGEVPLDGLVG
WATQNGGTTGGQGGTTINVDTASELISAMQASGPRVIRVSGTIDLDGMNDVASDKTLIGV
GSDATITGGGLDLSGVENVIIRNINFRGWDDDAINIQEGSTNIWVDHNSFTDGYDGAVDI
KRESDFITVSWNHVHNHRKSMLLGHSDSHTEDIGHLRVTYHHNFFDGSYSRHPRVRFGNP
VHVFNNYYVGNDYGVASTENAGVLVEGNYFDNVQDPTLVGYGSSDDGNLVERNNVYANGS
GTPESAGSVAAIPYSYTLDNPNNIPNIVSNGAGTGKI
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccctgaccgcactcgcggcggtggcccagtccgccgccgcggcgacgatcgacaca
gacgcctactacgtgctggtcaaccggcacagcggcaaggcgatggacgtctgggagtgg
tcgaccgacaacggcggtgagatccgccagtacgacaacctcggcggccacaaccagcag
ttccggttcgtctccgccggggacggctactacgtgctggtcaaccggcacagcggcaag
gccgtcgacgtgtgggagcactccaccgccgacggcgccgagatccgccagtacgacgtc
acccacggccacaaccagcagttccgcgtcgtggactccgccggcggcgacgtgcggctg
atcaaccgcaacagcggcaaggccctggaggtgtgggagtggtccaccgacaacggcgcc
cgcctgtcgcagtacaccgaccacgacggcgccaaccagcgctggcaactggtcaaggcc
gacaccaacgtcggcacgccggatccgggtggtgaggttccgctcgacgggctggtcggc
tgggccacgcagaacggcggcaccaccggcggccagggcggcaccaccatcaacgtcgac
accgcctccgaactgatctcggcgatgcaggccagcggcccccgcgtcatccgggtcagc
ggcaccatcgacctcgacggcatgaacgacgtcgcctccgacaagaccctcatcggcgtc
ggctccgacgccaccatcaccggcggcggcctcgacctcagcggcgtcgagaacgtcatc
atccgcaacatcaacttccgcggctgggacgacgacgccatcaacatccaggaaggttcc
acgaacatctgggtggaccacaacagcttcaccgacggctacgacggcgcggtcgacatc
aaacgcgagtccgacttcatcaccgtctcgtggaaccacgtccacaaccaccgcaaatcg
atgctgctcggccactccgacagccacaccgaggacatcggccacctgcgggtgacctac
caccacaacttcttcgacggctcctacagccgccacccccgcgtgcgcttcggcaacccg
gtacacgtgttcaacaactactacgtcggcaacgactacggcgtcgcctccaccgagaac
gccggagtcctggtcgaaggcaactacttcgacaacgtccaggacccgacgctggtcggc
tacggctcctccgacgacggcaacctggtggaacgcaacaacgtctacgccaacggctcc
ggcacccccgagtcggcgggcagcgtcgccgccatcccctacagctacaccctcgacaac
ccgaacaacatcccgaacatcgtcagcaacggcgccggaaccggcaagatctga
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