Thermaerobacter sp. FW80: E1B22_09305
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Entry
E1B22_09305 CDS
T05930
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
thef
Thermaerobacter sp. FW80
Pathway
thef03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E1B22_09305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thef03400
]
E1B22_09305
Enzymes [BR:
thef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E1B22_09305
DNA repair and recombination proteins [BR:
thef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E1B22_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QBS37935
UniProt:
A0A4P7GVF0
LinkDB
All DBs
Position
complement(2240083..2241030)
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AA seq
315 aa
AA seq
DB search
MPGERLRVQVAGRTLELSHLDRLLWPDAGLTKADLIDYWVRVAPYLLPHLRDRPLVCTRY
PDGAQAPGFYQKDAPPGTPPWVRTWPYRTREGRTIRFLLADEPATLAWLGQQAAIEIHPW
LSTIGHPDRPDWVVFDLDPGPGATFAMAVEVGRLVRHVLAALDLDAYAKTSGATGLHVFV
PVIPEHPYPVVTAFARRVAAVVQRLRPDLVTTVRAVARRPPATVYLDVLQNGKGKTLVTV
YGPRPRPGAPVSMPVTWEELERGVEPAAWNLRTAPARLRAVGDLWARAAASRRSLTPACR
RLGLDVGAGRLPSPV
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgccgggagaacggctgcgggtgcaggtggccggtcgaacgctggagctctcccacctg
gaccggctgctctggcccgacgccgggctgaccaaggcggatctgatcgactactgggtg
cgcgtggcgccgtatctcctgccgcacctgcgcgaccggccgctggtctgtacccgctac
cccgacggggcccaggccccgggattctaccagaaggacgcgccgcccgggacgccgccg
tgggtacgcacctggccctaccgaacccgggagggccgcaccatccggttcctcctggcg
gacgaaccggccaccctggcgtggctgggccagcaggcggccatcgagatccatccgtgg
ctgtccaccatcgggcaccccgaccgtccggactgggtggtcttcgacctggaccccggt
cccggggccaccttcgccatggccgtcgaggtggggcgcctggtccgccacgtgctggcc
gccctggacctggacgcctatgcgaagacgtcgggggccacgggcctgcacgtgttcgtc
ccggtcatcccggagcatccttatcccgtggtcaccgcgttcgcgcggcgggtggcggcg
gtggtccagcggctgcggcccgacctggtcaccaccgtgcgggcggtggcccggcggccc
ccggccacggtctacctggacgtgctgcagaacggcaagggcaagacgctggtcacggtc
tacggtccccggccgcggccgggtgcgccggtgtccatgccggtgacgtgggaggagctg
gagcgcggcgtcgagcccgccgcctggaacctgcgcacggcgccggcgcggttgcgcgcc
gtgggcgatctctgggcgcgggccgcggccagccgccgctccctgaccccggcctgccgc
cggctcggcctggacgtgggagcgggccggctgcccagccccgtgtag
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