Thermomonas sp. HDW16: G7079_11335
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Entry
G7079_11335 CDS
T06498
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
theh
Thermomonas sp. HDW16
Pathway
theh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
theh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G7079_11335 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
theh03021
]
G7079_11335 (rpoB)
03400 DNA repair and recombination proteins [BR:
theh03400
]
G7079_11335 (rpoB)
Enzymes [BR:
theh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G7079_11335 (rpoB)
Transcription machinery [BR:
theh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G7079_11335 (rpoB)
DNA repair and recombination proteins [BR:
theh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G7079_11335 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QIL21280
LinkDB
All DBs
Position
complement(2394618..2398781)
Genome browser
AA seq
1387 aa
AA seq
DB search
MTTATQQYSFTEKKRIRKDFGKSRSILEVPFLLAIQVDSYREFLQEHTEASKRADRGLHA
ALKSVFPISSYSGNAALEYVGYKLGEPMFDERECRNRGLSYGAPLKVTVRLVIYDRESST
KAIKYVKEQEVYMGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
FSARVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSVLLRALGYNNEEMLNEFFEINTFH
IEAEGVQLELVPERLRGETLDFDLADGDKVIVEAGKRITARHVKQLESAGVSALAVPDSY
IVGRILSHDVIDPKTGELLATANDEINEEILGKLRKAGIASVGTLWVNDLDRGAYLSNTL
RIDGTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSSVGRMKFNRRIGR
DAVTGASVLYDAKYFADRKDEESKRLVEECGNGSDILDVIKVLTEIRNGRGVVDDIDHLG
NRRVRSVGEMAENVFRVGLVRVERAVKERLSMAEADGLSPQDLINAKPVAAAIKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNI
GLINSLAVFARTNKYGFLETPYRKVVDGKITDDIEFLSAIEEVGKVIAQANAPRDAKNNI
TAQFVACRFNGENELRPPSEIQFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLKSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEISGEHDAGV
DIYTLIKYTRSNQNTCINQTPLVNPGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWN
GYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDES
GVVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTV
IDVQVFTRDGIEKDKRARQIEEYEIKRVKKDFDDQFRILESAIYARLREVLLGKTANGGP
GVKKGDSVSSLVLDGLKKSDWLQLRMKEDDANDAIERATKQLDAHRKEFDKRFDDKRGKI
TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYMANGETVDI
VLNPLGVPSRMNIGQVLEVHLGWAAKGLGQKIQKMLDAQAKIADLRKFLDQIYNHDNTAH
AERVDLKQFSDAELLTLAQNLTDGVPMATPVFDGADEAEIKKMLELAELPLSGQTVLHDG
RTGEAFEREVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAI
NMELEEH
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgccacccagcagtattcgttcaccgagaagaagcgcatccgcaaggacttc
ggcaagagccggtccatcctggaagtgccgttcctgctcgccatccaggtcgactcctac
cgcgagttcctgcaggagcacaccgaggcgtccaagcgcgccgatcgtggcctgcatgcc
gcgctgaagtcggtgttcccgatcagcagctacagcggcaatgccgcgctggaatacgtc
ggctacaagctcggcgagccgatgttcgacgagcgcgaatgccgcaaccgcggcctgagc
tacggtgcgccgctgaaggtgaccgtgcgcctggtgatctacgaccgtgagtcgagcacc
aaggcgatcaagtacgtgaaggagcaggaggtctacatgggcgaaattccgctcatgacc
gacaacggcaccttcatcgtcaatggcaccgagcgcgtcatcgtctcccagctgcaccgc
tcgccgggcgtgttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctg
ttctccgctcgcgtgatcccgtaccgcggttcctggctggacttcgagttcgacccgaag
gacgcgctgttcacccgcatcgaccgccgccgcaagctgccggtcagcgtgctgctgcgt
gcgttgggctacaacaacgaagaaatgttgaacgaattcttcgagatcaacaccttccat
atcgaagccgaaggcgtgcagctggagctggtgcccgagcgcctgcgcggcgaaaccctg
gacttcgacctggccgatggcgacaaggtcatcgtcgaggccggcaagcgcatcaccgcg
cgccacgtgaagcagctggaaagtgccggcgtgtctgcgctcgcggtgccggacagctac
atcgtcggccgcatcctgtcgcatgacgtgatcgatccgaagaccggcgaactgctggcc
accgcgaacgacgagatcaacgaggaaatcctcggcaagctgcgcaaggctggcatcgcc
agcgtcggcaccctgtgggtgaacgacctggatcgcggcgcctacctctccaacaccctg
cgcatcgacggcaccaagacccagctggaagcgctggtcgagatctaccggatgatgcgt
ccgggcgagccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcacc
ttcgagcgctatgacctgtcctcggtcggccgcatgaagttcaaccgccgcatcggccgt
gacgccgtcaccggcgcctcggtgctgtacgacgccaagtacttcgcggatcgcaaggac
gaggagtccaagcgcctggtcgaggagtgcggcaacggttccgacatcctggacgtgatc
aaggtattgaccgagatccgcaacggtcgtggcgtggtcgacgacatcgaccacctgggc
aaccgtcgcgtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtc
cgcgtcgagcgcgcggtcaaggagcgcctgtcgatggcggaagccgatggcctgtcgccg
caggacctgatcaatgccaagccggtggccgccgcgatcaaggagttcttcggttccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcggaagtcacccacaagcgccgc
gtctccgcgcttggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgac
gtgcacccgacccattacggccgcgtctgcaccatcgagacgcctgaaggtccgaacatc
ggcctgatcaactcgctggcggtgtttgcccgcaccaacaagtacggtttcctcgagacc
ccgtaccgcaaggtggtggacggcaagatcaccgacgacatcgagttcctgtcggcgatc
gaggaagtgggcaaggtcatcgcccaggccaatgcgccgcgcgacgccaagaacaacatc
accgcccagttcgtggcctgccgcttcaacggcgaaaacgaactgcgtccgccgagcgaa
atccagttcatggacgtcagtccgatgcagaccgtgtcggtcgcggcggcgctggtgccg
ttcctggagcacgatgacgcgaaccgcgcactgatgggcgcgaacatgcagcgccaggcc
gtgccgacgctgaagtcgcagaagccgctggtcggcaccggcatcgagcgcgccgtggcg
cgcgactcgggcgtgaccgtgaacgcgcgtcgtggcggcgtgatcgagcagatcgacgcc
ggccgcatcgtggtcaaggtgaacgaggcggagatctccggcgagcacgatgccggcgtc
gacatctacaccctgatcaagtacacgcgttccaaccagaacacctgcatcaaccagacc
ccgctggtgaacccgggcgacgtggtcgcgcgcggcgacgtgctggccgacggcccgtcc
accgacatcggtgaactggcgctgggccagaacatgctgatcgcgttcatgccgtggaac
ggctacaacttcgaagactccatcctgctcagcgagcgcgtggtggaagaggatcgttac
accacgatccacatcgaagagctgacctgcgtcgcgcgtgacaccaagctgggcccggag
gaaatctccgcggacatcccgaacgtctccgagcaggcgctgaatcgcctcgacgagagc
ggcgtggtgtacatcggcgccgaagtgcgcgccggcgacatcatggtcggcaaggtcacg
ccgaagggcgagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcgtccgacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtc
atcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgcgcgcgccagatc
gaggaatacgagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctcgag
tcggcgatctacgcacgcctgcgcgaagtgctgctgggcaagaccgccaatggcggcccg
ggcgtcaagaagggcgacagcgtgtcctcgttggtgctcgacggcctgaagaagtccgac
tggctgcagctgcgcatgaaggaagacgacgcgaacgacgcgatcgaacgcgccaccaag
cagctcgacgcgcaccgcaaggagttcgacaagcgcttcgacgacaagcgcggcaagatc
acccagggcgatgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggcggtg
aagcgccgcatccagcccggcgacaagatggccggccgccacggcaacaagggcgtggtc
tcgacgatcgttccggtcgaggacatgccgtacatggccaacggcgagaccgtcgacatc
gtgctgaacccgctgggcgtgccgagccgtatgaacatcggccaggtgctggaagtgcac
ctgggctgggccgccaagggcctgggccagaagatccagaagatgctcgatgcccaggcc
aagatcgccgacctgcgcaagttcctcgaccagatctacaaccacgacaacaccgcgcat
gccgagcgcgtcgacctcaagcagttcagcgatgccgaactgctgaccctggcgcagaac
ctcaccgacggcgtgccgatggccaccccggtgttcgacggcgcggacgaggccgagatc
aagaagatgctcgaactcgccgagctgccgctgtccggccagaccgtgctgcacgacggt
cgcaccggcgaggcgttcgagcgcgaggtgacggtcggctacatgcacatgctaaagctg
aaccacctggtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgtcacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaagtc
tgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtcc
gacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgatggcgagcacgagatg
gtcgcgggcatgccggaatccttcaacgtgttggtgaaggaaatccgcagtctggccatc
aacatggaactcgaggagcactga
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integrated database retrieval system
