Thermaerobacter sp. PB12/4term: DYI95_005620
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Entry
DYI95_005620 CDS
T06418
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
thep
Thermaerobacter sp. PB12/4term
Pathway
thep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DYI95_005620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thep03400
]
DYI95_005620
Enzymes [BR:
thep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DYI95_005620
DNA repair and recombination proteins [BR:
thep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DYI95_005620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QIA27066
UniProt:
A0A8T8D7E8
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Position
complement(1365372..1366658)
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AA seq
428 aa
AA seq
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MAAGPPIPRSWDELWQPGRIAPMLARRAQEPFSSPAFRFEIKWDGYRCLVFADPRSGTTF
LQSRHGYDLTPFFPELAVLHRLLAAPAVLDGEIVALAGGLPSFAALQRRLGRPAGTRRPP
GPVPALLVIFDLLGDGGRVRLGEPLAERLQRLARLFPGGAAPGLVLSQGVVEAGEALFAR
VRAQGLEGVVAKRLDSPYLPGWRTAYWQKIKAERELEAVVGGVVPGGRAAGVGTLLLGLF
GPGDALHYVGHVSTGLGSGEARWLLARLRPRATCPFARIPERARGQPVVWAEPALVCQVG
YLEWTPQGHLRHPVFRRWRDDVPASRCRLPGSHPARAAAGLEHPPAAAAGHGPAGGDGQG
EAGGRGDGDGGGSPAPGSRPRDGDRPGYGNRPRAADSPGQGADRQAVGPSAAAGAAGAPR
GGEGPRPG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
gtggcggcgggaccgcccattccccgcagctgggacgagctgtggcagcctggccgcatc
gcgcccatgctggcccgccgggcccaggagcccttctcctcgcccgccttccggttcgag
atcaagtgggatggctaccggtgcctggtgtttgccgatccccggtccggcaccaccttc
ctgcagtcccgtcacggctacgacctgacgcccttcttccccgagctggccgtgctgcac
cggctgctggccgcccctgccgtcctggacggcgagatcgtggccctggccggcggcctc
ccgtccttcgccgcactgcaacggcggctgggccgcccggccgggacccggcggccgccg
ggtccggtgcctgccctgctggtgatcttcgacctcctgggagacggcggccgggtccgg
cttggggagcctctggccgagcggctccagcggctggcccggctctttcccggcggcgct
gccccggggctggtactctcccagggcgtggtcgaggccggcgaggccctcttcgcccgg
gtccgggcccaggggctggagggcgtggtggccaagcggctggacagcccgtatttgccg
ggatggcgcaccgcctactggcagaagatcaaggccgagcgggagctggaggcggtggtg
gggggagtcgtccccggcggccgcgccgccggggtcggcacgctgctgctgggcctgttc
ggccccggcgacgcgctgcattacgtgggccatgtcagcacgggtctcggcagcggggag
gcccggtggcttctggctcgcctccgaccccgggcgacctgccccttcgcccgcatcccc
gagcgggcccggggccagccggtggtctgggccgaaccggccctggtctgccaggtgggc
tacctggagtggaccccccagggccacctgcggcaccccgtcttccggcgctggcgggac
gacgtgcccgcctcccggtgccgcctccccggcagccatcccgcccgcgcggccgccggg
cttgagcacccgccagcggcggcggcaggccacggccctgccggcggggacggtcagggc
gaagccggcggccggggagatggagatggcggcggttcccccgcgccgggttcccggcca
cgggatggggaccggcccgggtacgggaacaggccacgggctgcggactcgccgggccag
ggcgcggatcgccaggcggtcgggccatccgccgcggccggtgcggccggcgccccccgc
gggggcgaggggccccggccgggttga
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