KEGG   Thermosipho sp. 1070: Y592_00245
Entry
Y592_00245        CDS       T04909                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ther  Thermosipho sp. 1070
Pathway
ther02024  Quorum sensing
ther03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ther00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Y592_00245
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Y592_00245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ther03019]
    Y592_00245
   03036 Chromosome and associated proteins [BR:ther03036]
    Y592_00245
Messenger RNA biogenesis [BR:ther03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Y592_00245
Chromosome and associated proteins [BR:ther03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Y592_00245
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: ANQ52980
LinkDB
Position
complement(52067..52342)
AA seq 91 aa
MAEKFNLQDRFLNILRTSKIPVKVYLVNGFQTKGIIRSFDNFTMLLENGSQQNLIYKHAV
STIMPEAFVRLTSKQSQDESENNEKESNGEE
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggagaaatttaatttacaggataggtttttgaacattttaagaactagcaaaatt
cctgtaaaagtttatttagtaaacggttttcaaactaagggtattatacgatcatttgat
aattttaccatgcttttggaaaatggtagtcagcaaaatttaatttacaaacatgctgta
agtactattatgcctgaggcgtttgttagattaacgagtaaacagtcgcaagatgaaagt
gaaaataatgaaaaggaaagtaatggagaagaataa

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