Thermodesulfobacterium sp. TA1: F1847_07095
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Entry
F1847_07095 CDS
T06202
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
thet
Thermodesulfobacterium sp. TA1
Pathway
thet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F1847_07095 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thet03021
]
F1847_07095 (rpoB)
03400 DNA repair and recombination proteins [BR:
thet03400
]
F1847_07095 (rpoB)
Enzymes [BR:
thet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F1847_07095 (rpoB)
Transcription machinery [BR:
thet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F1847_07095 (rpoB)
DNA repair and recombination proteins [BR:
thet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F1847_07095 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QER42520
LinkDB
All DBs
Position
complement(1394669..1398754)
Genome browser
AA seq
1361 aa
AA seq
DB search
MLNNQRNLPVRKNFAKVKQIQEVPYLLRIPKESYNKFLQAKTPPEHRADIGIHRCLKSVF
PIRDYSETAVLEYIDYKILEPEYEPEEAKDKGLTYEAPIKLKVRLVTYDLDPETRVKSIK
DVKEQEVYFGTIPLMTEDGRFIINGTERAIVNQLQRSPGVIFEKEKTHAKAGRLTYIARV
IPVKGSWLDFIYDYKGRFFVRIDKRKNILATIFLKAMGMSEEEILSLFYPTERYLILDEG
VEKILDYELLAGQKVVADIVNPNTGEVIVKKGKVITAGLIKKLKRAGIYSVKLPDEALIG
KICAKEVVDPDTGEVILEVNQEITKEILDLLREKGIKEVNVLFVDLHYYTSSVRDALKTD
KIKNREEALIEIYRKMRPSSPVNYEVAEAYFRSLFFDPETYDLSEIGRYKINLRLNLDIP
INQRILTQKDIIAILKELIRLREREDEGDDIDSLSNRRIRAVGELVENQFLIGLMRMERA
IKEKLQLQELEEITPVELINSKPVVGAVKEFFAQGQLSQFMDQTNVLSMLTHKRRLSALG
PGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSPTTFAQTNPYGFLETPYRLV
KEGRVTDQIIYLNAAEEKDLVIAQSTIRLDKEGNILEEYVPARKNGEFIIAHRDEVDLID
LLPAQVVSVSSSLIPFLEHDDANRALMGSNMQRQAVPLIKTKAPLVGSGMERAVALNSGM
VIVAEADGVVEDVDSTRIVVRYDTKEGELPEVKIYELIKWKKSNQNTCFSQRPIVKPGQR
VKKGEILADGPSISKGELALGKDVLVAFMPWRGYNFEDSIIISERLVKEDVFTSIHIEEF
ECVARETKLGREEITRDLPNVSEELLTNLDESGIIKIGSYVKPGDILVGKVTPKGETTLT
PEEKLLRAIFGEKAKDVKDTSLKVPAGIEGIVIDTKILTRKGLEKDIRAKQKEDETIARL
LRNQADVLEVLFRHTVNRLAYVLNGELATAELEREGQIFINKGEALTLERLKNLPTSLLP
KLKDIVPSSKKELITEVIKAYEKKRKEIIEEYEAHINRIKKGDELPPGVLKVVKVFVAMK
RKLQPGDKMAGRHGNKGVVSKIVPIEDMPYLPDGTPVDMILSPLGVPSRMNIGQLLETHL
GWACKELGKKLAKLAQEYQIESVKALLKEIFYEEEYEKLVEGKTDEEILELAKGFADGIP
IATPVFAGAKEAEIKKWLSLAGLNESGTTVLYNGMTGEPFYEPVTVGYMHMLKLHHLVDD
KIHARSTGPYSLITQQPLGGKSQFGGQRLGEMEVWAIEAYGAAYTLHEFLTVKSDDVEGR
TKMYEKLVKGKNFLEGGMPESFKVLTKELQGLCLDIEPIEE
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgctaaacaaccaaagaaacttaccggttcgtaaaaattttgctaaagtaaaacaaatt
caagaagtaccttatcttttaaggatacctaaggagtcttacaataagtttttacaggct
aaaacccctccagagcatagagctgatataggcattcatagatgtttaaagtcagtcttt
ccgataagagattattctgagactgcggttttagaatacatagattacaaaattttagaa
ccagagtacgaaccagaagaagctaaagataaaggcttaacctatgaagctccgattaaa
ctaaaggtgcgtttggtaacttatgatttagaccctgaaaccagggtaaagagcattaaa
gatgtcaaagagcaagaggtttattttggaaccattcctcttatgactgaagatggaagg
tttatcataaacgggactgaacgcgctatcgttaatcaacttcagaggtcccctggtgtt
atttttgaaaaagaaaagactcatgcgaaggcaggcaggctaacctatattgctagggtt
atccctgtaaagggttcatggttagattttatttatgattataaaggtaggttttttgta
aggatagataaaagaaaaaatattttagctaccatctttcttaaagctatgggtatgagt
gaagaagaaattttgtctttattttatcctactgagagatatctaatcttggacgagggt
gtagaaaaaatcttagattacgaacttttagccggccaaaaggtagtagctgatattgtt
aatcccaacaccggggaagttatcgttaagaaaggcaaggtaattactgcaggtttgata
aaaaaattaaaaagagcagggatttattcggtaaaacttcctgatgaggctttgatagga
aagatttgtgctaaagaagtggtagatcctgatactggagaggtgattttagaagttaat
caagaaataacgaaagaaatattagatttgcttagggaaaagggaataaaagaggtaaat
gttctttttgtagaccttcattattatacttcatctgtgagagatgcattaaaaacagat
aaaataaaaaacagggaagaggctcttattgaaatttatagaaagatgcggccttcaagt
cctgtaaattatgaagtggcagaggcttactttaggtctctcttttttgatcctgaaact
tatgacctttctgagataggacgttataaaattaatttgcgtttaaacttggacattcca
ataaatcagaggatacttacgcaaaaagatattattgctattttaaaagagttgataagg
ttaagagaaagagaagatgaaggagacgatatagacagcctttctaacagaaggattagg
gcagtaggagagttggtagaaaaccagtttcttatcggtcttatgaggatggaaagggct
ataaaggagaaactccagcttcaggagcttgaagagataactcctgtagagcttatcaac
agtaagcctgtggtgggtgcggtaaaggagttttttgctcaaggccagctttctcagttt
atggatcagacaaacgttctttctatgcttacccacaaaagaagactttctgctttaggt
ccaggaggtttgaccagagaaagggcaggatttgaggttagagacgttcatcccagccat
tacggaagaatttgtcctatcgaaacacctgaaggtcctaacataggtttaatcgtttct
ccaactacttttgctcaaaccaatccttatgggtttttagaaactccttatcgtttggtt
aaagaaggtagggtgacggatcaaatcatctatttaaacgctgctgaagaaaaagattta
gtaatagctcaatctactattagattagataaagaaggtaatattttagaagaatatgta
cctgctagaaagaacggagaatttatcattgcccatagagatgaggttgatttgatagac
cttttacctgctcaagtggtaagtgtttccagctctttgataccttttcttgagcatgac
gatgctaaccgtgcgcttatgggttcaaacatgcaaaggcaggctgtgcctttgattaag
actaaagctcctttagttggttctgggatggagagagcagtagccttaaattctggtatg
gttatagtagctgaggctgatggagtagttgaagatgttgatagcaccagaatcgtagta
agatatgatactaaagaaggggagcttccagaggtaaagatttacgaattgataaagtgg
aaaaaatctaaccaaaacacttgtttctcacaaaggcctatagtcaaaccaggacaaagg
gttaaaaaaggagaaatcttggctgatggtccttctattagtaaaggagaattggctttg
ggtaaggatgttttagtagcctttatgccttggagaggttataattttgaggactctatc
ataatttctgaaagattagtaaaagaagacgtatttacctctattcacatagaggagttt
gagtgtgtagctcgagagaccaagcttggaagagaagaaattaccagagaccttcctaat
gtaagcgaagaacttttaaccaatttagacgaaagtggtattataaagataggaagttat
gtaaaacctggagacattttagtagggaaggtgacacctaagggtgagactacccttaca
cctgaagaaaagttattaagggctatttttggagaaaaggccaaagatgtgaaagatacc
tctttaaaggtaccggctggtatagaaggtatcgtaattgatactaaaatccttacccgt
aagggattagaaaaagacattagggctaaacagaaagaagatgaaactatagcaagacta
ttaagaaatcaagcagatgttttagaggtcctttttaggcatacggtaaacaggctggct
tatgttttgaacggagaattagctactgcagaattagaaagagaaggccagatttttatc
aataaaggggaggcccttaccttagaaagattaaaaaacttgcctacctctctattacct
aagctgaaagatatagttccatcttctaagaaagagttgattactgaagtaataaaggcc
tatgaaaaaaagagaaaggaaatcatagaagagtacgaagcccatattaataggattaaa
aaaggagatgaattaccccctggtgttttaaaagtagtaaaggtttttgtggcgatgaaa
agaaaacttcagccaggagataagatggcaggaaggcacggaaacaaaggtgttgtttct
aaaattgttcctattgaggatatgccttatcttcctgatggaacacctgtagacatgata
ctttctcctttgggtgttccttctcgtatgaatatcggtcagcttctcgaaacccactta
ggttgggcttgtaaagagctgggtaaaaaactggccaagttagcccaggaatatcagata
gaaagcgtaaaggcccttttaaaggaaattttttacgaagaagaatatgaaaaattggta
gaaggtaagacagacgaagagatattagagcttgctaagggttttgccgatggtattcct
attgctacccctgtttttgcaggagctaaagaagctgagataaagaaatggctgtcttta
gctgggttgaatgaaagtggaactacagttctttataacggaatgacaggggaacccttt
tatgaaccggtaaccgtaggatatatgcatatgttaaagctccatcatttggttgatgat
aaaatccatgctcgatctacaggaccatattctttgataacccagcaacctcttggtgga
aagtctcagtttggtggccaaagattgggagagatggaggtttgggcaatagaggcttat
ggagctgcttacactttacatgaatttcttactgtaaaaagtgatgacgtagaaggacgg
accaagatgtatgaaaaattggtaaaaggtaaaaactttttagaaggaggcatgcctgaa
agctttaaggtgttaactaaagagctacaaggtctttgtttagatatagaacctatagaa
gaataa
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