Thiomicrorhabdus sediminis: FE785_03595
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Entry
FE785_03595 CDS
T05983
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03420
Nucleotide excision repair
thig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE785_03595
03430 Mismatch repair
FE785_03595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thig03400
]
FE785_03595
Enzymes [BR:
thig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE785_03595
DNA repair and recombination proteins [BR:
thig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE785_03595
MMR (mismatch excision repair)
Other MMR factors
FE785_03595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
AAA_19
UvrD_C
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
QCU89785
UniProt:
A0A4P9K4C6
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All DBs
Position
783563..784600
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AA seq
345 aa
AA seq
DB search
MDKRVVFAVAGSGKTSSIIQQLNLESRCLIVTYTDNNTSHLKKRIIKKFGLIPKGVKVYS
YFTFLYSFCFRPICGYQLKTKGLIFPNSLPKHILQSKKDSRKHYIDPNLRLYANRLAKLL
IEFNVVSDVIKRIEHFFDFVFVDEVQDFAANDFNFLCALSATDVDIQLVGDFFQHTFDTS
NDGMIQKNLHKSFEGYCKQFEKAGYTIDLTSLSHSYRCSPSICSFVTENIGINIESHRKD
AVEVCLLEDQLEIDKIFLDNSVAKLFFNKSTSYNGNTHNWGSTKGLDHFNDVCVVLNPNT
FRAFKNSQLESLASTTKNKLYVACTRANRNLYFVNQSSLIKYKID
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
gtggataaacgagtagtttttgcggttgcaggttcgggtaaaacttcaagtattattcaa
caactgaatctagagtctcgttgtttaattgttacttataccgataataatacaagtcat
ttaaaaaaaaggatcattaaaaagtttggattgattcccaaaggggtaaaggtatacagt
tactttacgtttctttactcgttttgttttaggcctatttgtggttatcaacttaaaaca
aaagggctgatttttccaaactcgctccccaaacatattctgcaatcaaagaaagattca
agaaagcactatattgatccaaatttgcgtttatatgccaatcgtttggcgaaactgtta
attgaatttaatgtggtttctgatgtaataaagcgaattgaacatttttttgattttgta
tttgttgatgaggtacaggatttcgcagctaatgactttaactttttatgtgctttatca
gccacagatgtagatatacagcttgttggtgatttttttcagcatacttttgatactagt
aatgatggaatgattcaaaaaaatctccataaatcatttgaaggctactgtaaacaattc
gagaaagcgggttataccattgacttgacgtcactttctcacagttatcgatgcagtcca
agtatttgttcattcgtaacagaaaatattggtattaatattgaatctcatcgtaaagat
gcagtggaagtttgtttgctggaagatcaattagaaattgataaaatttttctagataac
tcagtagctaaactattttttaataaaagcacttcgtacaatggtaatactcataattgg
ggaagtacaaaagggcttgatcactttaatgatgtttgtgttgttttgaatccaaataca
tttagagcctttaagaacagccagcttgaatcattagcatcaactaccaaaaataagctt
tatgttgcttgtactagagcaaatagaaatctatattttgtaaatcaatcctctttaata
aaatataagatagattaa
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