Thiocapsa sp. M50B4: KFB96_09835
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Entry
KFB96_09835 CDS
T07253
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KFB96_09835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thim03021
]
KFB96_09835 (rpoC)
03400 DNA repair and recombination proteins [BR:
thim03400
]
KFB96_09835 (rpoC)
Enzymes [BR:
thim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KFB96_09835 (rpoC)
Transcription machinery [BR:
thim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KFB96_09835 (rpoC)
DNA repair and recombination proteins [BR:
thim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KFB96_09835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RRP36
Motif
Other DBs
NCBI-ProteinID:
QVL50679
LinkDB
All DBs
Position
complement(2160793..2165010)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKIIKQQGQALEFDAIKIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPITDYECICGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESFVVVDPGLVVDLERGQLLNDEQYLEALEANGDEFDAR
MGAEAVYELLRTIKLEDEVRRMREEIETTNSETKIKKLSKRLKLMESLMASGNRPEWMIL
TVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLMLHQCGLPKRMALELFKPFIFSKLQLRGLAATIKAAKKMVERGTPEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQIE
ARALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRERVNAKGEGSVFTDIDEARRAYET
GHADLHARCKVRIREVIKHKDASMHENTAIRETTLGRALVFAIVPDGLPFDLVDRALGKK
QISRLINICYRQLGLKETVVFADQVMYMGFRMATRSGVSIGLDDMAVPEEKAGILAAAEK
EVKEIQDQYASGLVTNGERYNKVVDIWSHTNDRVAKSMMSKLGKDSVIDRDGNEVTQDSF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVVLEVDCGTEGGLIMTPIIEGGDVVEPLRERI
LGRVAAVDVYQPGTEELVCEAGTLLDESWVERFETFGIDQVRVRSPITCESRLGVCAQCY
GRDLARGHRVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVNSIDIKNAGSVR
LHNIKVVEHHSGKNLVAVSRSGELTVVDDRGLEKERYKVPYGASLRAADGDPVKPGDVVA
NWDPHTHPVVTEVAGKLAFEDFIEGVTVQGQVDDVTGLTSRVVIDPKQRASSGKDLRPMV
KLLDEEGNELKIAGTDLPARYFLPAGAIVGVEDGANVGVGDILARIPQESSKTRDITGGL
PRVADLFEARKPKEVALLAEASGTIGFGKDTKGKQRLVITMDDGETVEELIPKWRNVNVF
EGERVERGEVIADGELASHDILRLKGVTALAEYLVKEIQDVYRLQGVKINDKHIEVIVRQ
MLRKVEVTSAGDTRLLRGEQVEHAHLMDENKRVMAEGKQPALYEPLLLGITKASLATESF
ISAASFQETTRVLTEAAVRGSTDRLAGLKENVIVGRLIPAGSGLAHHQERRRQRQMEMPA
SGKVEMATEELEEALKKALNTSDAR
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatctactgaaaatcatcaagcagcagggtcaggcactggaattcgacgcgatc
aagatcggactcgcctcccccgagatgatccgttcctggtcctacggcgaggtcaagaag
ccggagacgatcaactaccggactttcaagccggagcgtgacgggctgttttgcgccaag
atcttcggtccgattacggactacgagtgcatctgcggcaagtacaagcgtctgaagcac
cgcggtgtggtgtgcgagaagtgcggggtcgaggtcacgctggcgaaggtccggcgcgag
cgcatgggccatatcgatttggcgagcccggtcgcgcacatctggtttttgaagtccctg
ccgtcgcgtatcggtctgctgctggacatgaccttgcgcgacatcgagcgcatcctctat
ttcgagtccttcgtggtggtggacccgggtctggtggtcgacttggagcgcggccagctg
ctcaacgacgagcagtatctcgaagcgctggaggcgaacggcgacgagttcgacgcgcgc
atgggtgcggaggccgtctacgagctgctgcgcaccatcaagctggaggacgaggtccgg
cgcatgcgcgaggaaatcgagaccaccaactccgaaaccaagatcaagaagctctccaag
cgcttgaagctcatggaatcgctgatggcctcgggcaatcgtccggagtggatgatcctc
actgtcctgcccgtcctgccgcccgagctgcgccccttggtgccgctggacggcggccgg
ttcgcgacctcggatctgaacgacctctatcgtcgggtcatcaaccgcaacaaccgcctc
aagcgcctgctcgatctggtcgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctg
caggagtcggtcgacgcgctgctcgacaacgggcggcgcgggcgtgcgattacgggcacc
aacaagcgcccgctcaagtcgctcgccgacatgatcaagggcaagcaggggcggttccgt
cagaacctgctcggcaagcgtgtcgactactcgggccgctcggtcatcgtggtgggcccg
accctgatgctgcatcagtgcggtctgcccaagcgcatggcgctcgagctcttcaagccc
ttcatcttcagcaagctgcaattgcgcggcctggcggcgaccatcaaggccgccaagaag
atggtcgagcgcggtaccccggaggtctgggacatcctcgacgaggtgatccgcgagcac
ccggtgatgctcaaccgcgcgccgaccctgcatcgactcggcatccaagccttcgagccg
gtgctcatcgagggcaaggcgatccagctccatccgctcgtctgtaccgccttcaacgcg
gacttcgacggcgaccagatggcggtgcacgtgcccttgtcgctggaggcgcagattgaa
gcccgcgcgctcatgatggcctccaacaacatcctctccccggccaacggcgagcccatc
atcgtgccctcgcaggacgtggtgctcgggctctattacatgacccgcgagcgcgtgaac
gcgaagggcgaggggagcgtcttcaccgatatcgacgaggcacgccgggcctacgagacc
gggcatgccgatctgcatgcgcgctgtaaggttcgcatccgcgaggtgatcaagcacaag
gacgcctcgatgcacgagaacacggcgatccgggagaccaccctgggtcgtgccctggtg
ttcgccatcgttccggacggactgccgttcgatctggtggaccgcgcactcggcaagaag
cagatctcgcgcttgatcaatatctgctatcgccagctcggtctgaaggagaccgtggtc
ttcgccgaccaggtcatgtacatgggcttccggatggcgacacgttccggcgtctcgatc
ggtctggacgacatggccgtcccggaggagaaggcggggatcctcgcggccgccgagaag
gaggtcaaggagatccaggaccaatacgcgtccggtctcgtgaccaacggcgagcgctac
aacaaggtcgtcgacatctggtcgcacaccaacgatcgtgtcgccaagtccatgatgagc
aagctcggcaaggacagcgtcatcgatcgcgacggcaacgaggtgactcaggactcgttc
aactccatctacatgatggccgactccggcgcgcgcggctcggcggcacagatccggcag
ctcgccggtatgcgcggtctcatggccaagccggacggctccatcatcgagacgccgatc
accgcgaacttccgcgagggtctgaacgttatccagtacttcatctccacgcacggcgca
cgcaagggtctggccgacacggcgctcaagaccgccaactcgggttatctgacccgtcgt
ttggtcgacgtcgcgcaggacatggtggtgctcgaggtcgattgcggcaccgagggcggg
ttgatcatgacgcccatcatcgagggcggcgacgtggtcgagcccttgcgcgagcgcatc
ctcggacgcgtggcggcagtggatgtctatcagcccggcaccgaggagctcgtctgcgag
gccgggaccctgctcgacgagtcttgggtcgagcgcttcgagaccttcggcatcgatcag
gtgcgcgtacgctcgccgattacctgcgagtcgcgtctcggtgtttgcgcccagtgctac
ggacgcgacctggcgcgcggtcatcgcgtgaacctcggcgaggcggtgggtgtgatcgcc
gcccagtcgatcggcgagcccggcacgcagctgacgatgcggaccttccacatcggcggt
gcggcatcacgggccgcggcggtcaacagcatcgacatcaagaatgcaggctcggtgcga
ctgcacaacatcaaggtcgtcgagcatcactcgggcaagaacctggtcgcggtctcgcgc
tcgggcgagttgaccgtcgtcgacgatcgcgggctcgagaaggagcgctacaaggtgcct
tacggcgccagcctgcgtgccgccgacggcgaccccgtgaaaccgggcgacgtcgtggcc
aactgggatccgcatacccatccggtcgtcaccgaggtggccggcaagctggccttcgag
gacttcatcgagggtgtcaccgtgcaggggcaggtcgacgacgtcacgggtctgacctcg
cgcgtggttatcgatcccaagcagcgggcgtcctccggcaaggatctgcgcccgatggtc
aagctgcttgacgaggaaggcaacgagctcaagattgcgggcaccgacctcccggcgcgt
tacttcctgcccgcgggcgcgatcgtcggcgtcgaggacggagccaacgtgggcgtcggc
gatatcctggcgcgtattccgcaggagtcgagtaagacgcgcgacatcaccggcggtctg
ccgcgtgttgccgacctgttcgaggcccgcaagcccaaagaggtggccttgctcgcggag
gccagcgggacgatcggcttcggcaaggacaccaagggcaagcagcgccttgtcatcacc
atggacgacggggagacggtcgaagagctgatcccgaagtggcgcaacgtcaacgtcttc
gaaggcgagcgcgtggagcgtggcgaggtcatcgccgacggcgagctggcctcccacgac
atcctgcgtctgaagggcgtcaccgccttggccgaatacctcgtcaaggagatccaggac
gtctatcggctgcagggtgtgaagatcaacgacaagcacatcgaggtgattgttcgccag
atgctgcgcaaggtcgaagtgacctccgcgggcgatacccgtttgctgcgcggcgagcag
gtcgagcatgcgcacctgatggacgagaacaagcgggtcatggccgaaggcaagcaaccg
gcgctctacgagcctctgctgctcgggatcaccaaggcgtcgcttgcgaccgagtcgttc
atctccgccgcgtccttccaggagacgactcgcgtcttgaccgaggccgcggtgcgcggc
tccacggaccgcttggccggtctgaaggagaatgtcatcgtcggccgtttgatccccgcg
ggatccggtctcgcgcatcaccaggagcggcgccggcagcggcaaatggagatgccggcc
tccggtaaggtcgagatggcgaccgaggagctcgaagaggcattgaagaaggcgctcaat
acctccgacgcaaggtga
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integrated database retrieval system
