Thiocapsa sp. M50B4: KFB96_12620
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Entry
KFB96_12620 CDS
T07253
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03030
DNA replication
thim03430
Mismatch repair
thim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KFB96_12620 (dnaE)
03430 Mismatch repair
KFB96_12620 (dnaE)
03440 Homologous recombination
KFB96_12620 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thim03032
]
KFB96_12620 (dnaE)
03400 DNA repair and recombination proteins [BR:
thim03400
]
KFB96_12620 (dnaE)
Enzymes [BR:
thim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KFB96_12620 (dnaE)
DNA replication proteins [BR:
thim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KFB96_12620 (dnaE)
DNA repair and recombination proteins [BR:
thim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KFB96_12620 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
Intein_splicing
LAGLIDADG_3
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QVL51160
LinkDB
All DBs
Position
2789328..2794223
Genome browser
AA seq
1631 aa
AA seq
DB search
MDPSFVHLHLHSEYSLVDGLVRIKPLVKRVAALGMPAVAITDQCNFFALVRFYKAAVAAG
LKPIAGADLLVRNPEDAAKPHRLVLLVQDAIGYRNLTRLISRAYVEGQHLGVPHVERDWI
ASAAEGLIALSGGPHGDVAQLLLNGHREAAERRLAEWLAVFGDRYYLELIRTGREQEDAL
VEASVDLAIRSGVPVVATNDVRFLHPEDFEAHEVRVCIHEGRTLDDPRRPRRFSAEQSLR
SPAEMAELFADLPEALENSVEIAKRCNLELTLGKNFLPDFPVPAGMTMDSYFAEASRVGL
EERLQRILDPELPDLAEQRRPYAERLDLELSVIIQMGFTGYFLIVADFIQWAKAQGIPVG
PGRGSGAGSLVAYAMKITDLDPIEHDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDYVA
GKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDRVAKMVPFELGMTLEKALTESD
DLKAAYEDDEEIRALIDMARKLEGLTRNAGKHAGGVVIAPTKLTDFAPLYCEQGGENLVT
QFDKDDVEQVGLVKFDFLGLRTLTIIDWALKTVNALRREAGEAPIDIERIEPQDAEAFAL
LKRCETTAVFQLESRGMKELIKKLQPDNFGDITALVALFRPGPLQSGMVDDFINRKHGRA
EVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKQSEMDKQR
AIFEEGAVARGVDGNVATYIFDLMDKFAGYGFNKCVVGDTLVTDPSSGERHCVKDIYRSG
IDRVASLLSDHRMGVSPVVQVMENGIRPVLRLTTSLGKTLRATGNHPLLTATGWQRLDEL
RVGERIAAPARLPIEGREQWPEHELVTLGWVLSEGNTCHPSGFYFYNKDVEARDDFVSAA
SRFPDTVPTVRLRPERAETWCVYVGTGRDTRISCGNGHSFTPRSGARLWLERLDMVGQKA
PQKHFPPSVFRLDNPCLAVILGRIWSGDGYVAAENANNKIPSLASASLRLISETQHLLLR
FGIVSRLTEKLFPYKDGRVGYTLHLVGRRSITAFVELIGPHLVGKGKQLEALRRSLAEIP
SDLESVDTLPPEIKQAVGLEKDRSGLTWRQIEARSGVCVRALYGKDEPHKKGFRRATIRK
LAEFFDADLLRQAADAEIYWERVVSIEPDGAAMTYDLEVADTHNFVANDIIVHNSHSAAY
ALVSYQTLWLKTHYTAAFMAAVLSADMDNTDKVVTLIEECRALRLRVEPPAVNRSAYRFT
VADPRTVIYGMGAIKGVGEGAIEAIIAARTAEGPFRDLWDFCRRIDLHKANRRVLEALVR
AGALDELGPNRATLMAELPLALKLAEQHHATRAAGQTDLFGALEPVASPEPDPQLATEVR
VDWEDEQRLAGEKETLGLYLTGHPIDRYESELQAMAVSRIAKLLETDRELGRRDRRDREK
RSVAGLVVSVRHGKTPRGRMGSVVLDDRTGRIEITVFSELYEQLRHLLVPDQILQVSGAL
NFDEYRDSWSLRADDVRTFEQARASMADHLGLILDLSDPAAHADGLVRLDALRAALAAFR
DGDLPVRLRYRRPGAAGELVLGDAWRVEPADALLKRLRQLLGGDAVRVVYERSPLPTAQT
ETQRPRLAAVG
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
gtggatcccagcttcgtccatctgcatctgcattccgagtattccctggtcgacggactg
gtgcggatcaagccgttggtcaagcgtgtcgccgcgctggggatgccggcggtcgccatc
acggaccaatgcaacttcttcgccttggtgcgcttctacaaggctgcggtcgcggccggc
ctcaagccgatcgccggggccgatctgctggtgcgaaacccggaggacgccgccaaaccg
caccgtctggtgctgctcgtccaggatgcgatcggctaccgcaatctcacgcggctgatt
tcgcgggcctatgtcgagggccagcatctgggggtgccgcatgtggagcgcgactggatc
gcgtccgccgccgagggtctgatcgcgctctcgggcgggccgcacggcgacgtcgctcaa
ctgctcctgaacgggcatcgcgaggccgccgagcggcggcttgcggagtggctcgcggtc
ttcggcgaccgctattacctggagctgatccgcaccgggcgcgagcaggaggatgcgctg
gtggaggccagcgtggatctggccatccgctcgggtgtgccggtggtggcgaccaacgac
gtgcgtttcctccatcccgaggacttcgaggcccatgaggtccgggtctgcatccacgaa
gggcgcaccctggacgacccgcgtcgtccacgccgcttcagcgccgagcagtcgctgcgc
agtcccgcggagatggccgagctcttcgccgacctgcccgaggcgctggagaactcggtc
gagatcgccaagcgctgcaacctggagctgaccctcgggaagaacttcctgccggatttc
ccggtgccggcggggatgacgatggacagctatttcgccgaggcctcgcgggtcggtctc
gaggagcgcctgcagcgcatcctcgacccggagttgcccgacctcgccgagcagcgccgg
ccctatgccgaacggctcgatctggagctgtccgtcatcatccagatgggcttcaccggc
tacttcctgatcgtcgcggactttatccagtgggccaaggcacagggcatcccggtcggc
ccggggcgcggctcgggcgccggctcgctggtcgcctatgcgatgaagatcacggatctg
gacccgatcgagcatgacctgctgttcgagcgcttcctcaatcccgagcgcgtctccatg
cccgacttcgatgtcgacttctgcatggagggccgcgaccgggtcatcgactatgtcgcg
ggaaagtacgggcgcgaggccgtctcccagatcatcaccttcggcaccatggcggccaag
gcggtggtgcgcgatgtcgggcgcgtcatgggtcatccctacgggttcgtcgaccgggtc
gccaagatggtgcccttcgagctggggatgaccctggagaaggcgctgaccgagagcgac
gatctgaaggccgcctacgaggacgacgaagagatccgggcactcatcgacatggcccgc
aagctcgaaggcctgacccgcaatgccggcaagcatgccggcggcgtggtgatcgcgccg
accaagctgaccgacttcgccccgctctactgcgagcagggcggagagaacctggtcacc
cagttcgacaaggacgacgtggagcaggtcggactggtcaagttcgacttcctgggtctg
cgcacgctcaccatcatcgattgggcgctcaagaccgtgaacgcgctgcgtcgcgaggcc
ggcgaggcgccgatcgacatcgagcggatcgagccgcaggatgccgaagccttcgcgctc
ctgaaacgctgcgagaccacggcggtcttccagctggagtcgcgcggcatgaaggagctg
atcaagaagctccagcccgacaacttcggcgacatcaccgcgctggtcgcactctttcgc
cccggcccgctgcagtcgggcatggtcgacgacttcatcaaccgcaagcacggccgcgcc
gaggtcgcctatccgcacccggatctggagcccatccttaaaccgacctacggcatcatc
ctttatcaagagcaggtgatgcagatcgcccaggtgctcgcagggtattcgctcggcggc
gccgacctgctgcgccgggcgatgggcaagaagaagcagtccgagatggacaagcagcgc
gccatcttcgaggaaggggcggtcgcgcgtggggtcgacggcaatgtggcgacctacatc
tttgacttaatggataaatttgccggttacggctttaacaagtgtgtcgttggagacacg
ctggtgacggatccatcaagcggtgaacggcactgcgtcaaggatatctatcgatcgggg
atcgacagggtcgcgagtctgttgtcggatcaccggatgggcgtgagccccgttgttcag
gtgatggagaacggtatccggccggtcttgagactgaccacctcgctcggcaagacactg
cgtgcgaccggcaatcaccctttgctgacggcaacgggctggcagcggctcgatgaattg
cgtgtcggcgagcgtatcgccgcgcccgcgcgattgccgatcgagggccgtgagcagtgg
cccgagcacgagttggtgaccttgggatgggttctctcggaagggaatacctgccatccc
agcggcttctatttttacaacaaggatgtcgaggccagggatgatttcgtgtccgccgca
agccgctttcccgacaccgtgccgacggtgcggctgaggccggaacgtgccgagacctgg
tgcgtttacgtcgggaccggtcgtgataccaggatcagctgcggaaacgggcacagcttc
acgccacgctccggtgctcgattgtggctggagcggctggacatggtcggccaaaaggcg
ccacaaaaacactttccgccatccgtctttcgtctcgacaatccatgcttggcggtgatt
ctcgggcgcatctggtcgggagacggatatgtcgccgccgaaaacgcgaacaacaagatc
ccctctctggctagcgcctccctgcgcctgatcagcgagacccagcatctcttgttgcgt
ttcggtatcgtcagccgactgacggaaaaactctttccgtataaggatgggcgggtcggc
tataccttgcacctagtcggacgaaggagcattaccgcatttgtcgagttgatcgggccg
cacttggtcgggaaagggaaacaattggaagcgctgcgcaggtcgctcgctgaaatcccg
agcgatctggaatccgtcgacactctgccgcccgagatcaagcaggccgtcggcttggag
aaggatcgcagtggcctgacgtggcgtcagattgaagctcgcagcggcgtttgcgtgaga
gcactctatggcaaggacgagccgcacaagaagggatttcgccgagcgacaatccgcaag
ctcgccgagtttttcgacgccgatttactcagacaagccgccgacgcggagatctattgg
gagcgtgtggtctcgatcgagccggatggcgcggccatgacctatgatctcgaggttgcg
gatacccacaattttgtcgccaacgacatcatcgtccataattcgcattcggccgcctac
gccctggtcagctatcaaaccctctggctgaagacgcactacacggcggccttcatggcg
gcggtgctgagtgcggatatggacaacaccgacaaggtggtgaccctgatcgaggagtgt
cgcgcgctgcgtctgcgggtcgagccgccggcggtcaatcgctccgcctaccgcttcacg
gtcgccgatccgcgcaccgtcatctacggcatgggcgccatcaagggggtcggagagggt
gcgatcgaggcgatcatcgcggcacgcacggccgagggtccgttccgcgatctctgggac
ttttgtcgacggatcgatctgcacaaggccaaccgacgcgttctcgaggcgctggtccgc
gccggcgcactcgacgagctgggaccgaaccgggcgaccctgatggccgagctgcccttg
gcgctcaagctggcagaacagcaccatgcgacccgggcggcgggtcagaccgatctcttc
ggtgcactggagccggtcgcctcgcccgagcccgatccccaactcgcgaccgaggtccgt
gtcgactgggaagacgagcagcgtctggcgggcgagaaggagaccctcgggctctatctg
accggacatccgatcgatcgctacgagtccgagctccaggcgatggcggtcagccggatc
gccaagctcttggaaacggatcgcgagctgggtcggcgcgaccgacgcgatcgcgagaag
cgcagcgtcgccggtctcgtggtctcggtgcgtcacggcaagacaccgcgcgggcgcatg
ggctcggtggtgctcgacgatcgcacggggcgcatcgagatcacggtcttctccgagctc
tacgagcagttgcgtcatctgctggtgccggatcagatcctgcaggtctccggggcgctc
aatttcgacgagtaccgcgacagctggtccttgcgtgccgacgacgtgcggaccttcgag
caggcacgggcgagcatggccgatcatctggggctgatcctggatctctcggaccccgct
gcccacgccgatggcctcgtccggctcgatgccttgcgcgccgcactcgcggcctttcgc
gacggggatcttccggtccgtctgcgctatcgtcgcccgggggccgccggcgagctggtg
ctcggcgatgcctggcgtgtcgagccggccgatgccctgctgaaacgtctgcgacagctc
ctcgggggcgatgcggtcagggtcgtctacgagcgctcgccgctaccgacggcgcagacc
gagacgcaacgtccgcgtctggcggcggtgggctga
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