KEGG   Thiocapsa sp. M50B4: KFB96_12620
Entry
KFB96_12620       CDS       T07253                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
thim  Thiocapsa sp. M50B4
Pathway
thim03030  DNA replication
thim03430  Mismatch repair
thim03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:thim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KFB96_12620 (dnaE)
   03430 Mismatch repair
    KFB96_12620 (dnaE)
   03440 Homologous recombination
    KFB96_12620 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thim03032]
    KFB96_12620 (dnaE)
   03400 DNA repair and recombination proteins [BR:thim03400]
    KFB96_12620 (dnaE)
Enzymes [BR:thim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     KFB96_12620 (dnaE)
DNA replication proteins [BR:thim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     KFB96_12620 (dnaE)
DNA repair and recombination proteins [BR:thim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     KFB96_12620 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 Intein_splicing LAGLIDADG_3 DNA_pol_IIIA_C tRNA_anti-codon
Other DBs
NCBI-ProteinID: QVL51160
LinkDB
Position
2789328..2794223
AA seq 1631 aa
MDPSFVHLHLHSEYSLVDGLVRIKPLVKRVAALGMPAVAITDQCNFFALVRFYKAAVAAG
LKPIAGADLLVRNPEDAAKPHRLVLLVQDAIGYRNLTRLISRAYVEGQHLGVPHVERDWI
ASAAEGLIALSGGPHGDVAQLLLNGHREAAERRLAEWLAVFGDRYYLELIRTGREQEDAL
VEASVDLAIRSGVPVVATNDVRFLHPEDFEAHEVRVCIHEGRTLDDPRRPRRFSAEQSLR
SPAEMAELFADLPEALENSVEIAKRCNLELTLGKNFLPDFPVPAGMTMDSYFAEASRVGL
EERLQRILDPELPDLAEQRRPYAERLDLELSVIIQMGFTGYFLIVADFIQWAKAQGIPVG
PGRGSGAGSLVAYAMKITDLDPIEHDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDYVA
GKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDRVAKMVPFELGMTLEKALTESD
DLKAAYEDDEEIRALIDMARKLEGLTRNAGKHAGGVVIAPTKLTDFAPLYCEQGGENLVT
QFDKDDVEQVGLVKFDFLGLRTLTIIDWALKTVNALRREAGEAPIDIERIEPQDAEAFAL
LKRCETTAVFQLESRGMKELIKKLQPDNFGDITALVALFRPGPLQSGMVDDFINRKHGRA
EVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKQSEMDKQR
AIFEEGAVARGVDGNVATYIFDLMDKFAGYGFNKCVVGDTLVTDPSSGERHCVKDIYRSG
IDRVASLLSDHRMGVSPVVQVMENGIRPVLRLTTSLGKTLRATGNHPLLTATGWQRLDEL
RVGERIAAPARLPIEGREQWPEHELVTLGWVLSEGNTCHPSGFYFYNKDVEARDDFVSAA
SRFPDTVPTVRLRPERAETWCVYVGTGRDTRISCGNGHSFTPRSGARLWLERLDMVGQKA
PQKHFPPSVFRLDNPCLAVILGRIWSGDGYVAAENANNKIPSLASASLRLISETQHLLLR
FGIVSRLTEKLFPYKDGRVGYTLHLVGRRSITAFVELIGPHLVGKGKQLEALRRSLAEIP
SDLESVDTLPPEIKQAVGLEKDRSGLTWRQIEARSGVCVRALYGKDEPHKKGFRRATIRK
LAEFFDADLLRQAADAEIYWERVVSIEPDGAAMTYDLEVADTHNFVANDIIVHNSHSAAY
ALVSYQTLWLKTHYTAAFMAAVLSADMDNTDKVVTLIEECRALRLRVEPPAVNRSAYRFT
VADPRTVIYGMGAIKGVGEGAIEAIIAARTAEGPFRDLWDFCRRIDLHKANRRVLEALVR
AGALDELGPNRATLMAELPLALKLAEQHHATRAAGQTDLFGALEPVASPEPDPQLATEVR
VDWEDEQRLAGEKETLGLYLTGHPIDRYESELQAMAVSRIAKLLETDRELGRRDRRDREK
RSVAGLVVSVRHGKTPRGRMGSVVLDDRTGRIEITVFSELYEQLRHLLVPDQILQVSGAL
NFDEYRDSWSLRADDVRTFEQARASMADHLGLILDLSDPAAHADGLVRLDALRAALAAFR
DGDLPVRLRYRRPGAAGELVLGDAWRVEPADALLKRLRQLLGGDAVRVVYERSPLPTAQT
ETQRPRLAAVG
NT seq 4896 nt   +upstreamnt  +downstreamnt
gtggatcccagcttcgtccatctgcatctgcattccgagtattccctggtcgacggactg
gtgcggatcaagccgttggtcaagcgtgtcgccgcgctggggatgccggcggtcgccatc
acggaccaatgcaacttcttcgccttggtgcgcttctacaaggctgcggtcgcggccggc
ctcaagccgatcgccggggccgatctgctggtgcgaaacccggaggacgccgccaaaccg
caccgtctggtgctgctcgtccaggatgcgatcggctaccgcaatctcacgcggctgatt
tcgcgggcctatgtcgagggccagcatctgggggtgccgcatgtggagcgcgactggatc
gcgtccgccgccgagggtctgatcgcgctctcgggcgggccgcacggcgacgtcgctcaa
ctgctcctgaacgggcatcgcgaggccgccgagcggcggcttgcggagtggctcgcggtc
ttcggcgaccgctattacctggagctgatccgcaccgggcgcgagcaggaggatgcgctg
gtggaggccagcgtggatctggccatccgctcgggtgtgccggtggtggcgaccaacgac
gtgcgtttcctccatcccgaggacttcgaggcccatgaggtccgggtctgcatccacgaa
gggcgcaccctggacgacccgcgtcgtccacgccgcttcagcgccgagcagtcgctgcgc
agtcccgcggagatggccgagctcttcgccgacctgcccgaggcgctggagaactcggtc
gagatcgccaagcgctgcaacctggagctgaccctcgggaagaacttcctgccggatttc
ccggtgccggcggggatgacgatggacagctatttcgccgaggcctcgcgggtcggtctc
gaggagcgcctgcagcgcatcctcgacccggagttgcccgacctcgccgagcagcgccgg
ccctatgccgaacggctcgatctggagctgtccgtcatcatccagatgggcttcaccggc
tacttcctgatcgtcgcggactttatccagtgggccaaggcacagggcatcccggtcggc
ccggggcgcggctcgggcgccggctcgctggtcgcctatgcgatgaagatcacggatctg
gacccgatcgagcatgacctgctgttcgagcgcttcctcaatcccgagcgcgtctccatg
cccgacttcgatgtcgacttctgcatggagggccgcgaccgggtcatcgactatgtcgcg
ggaaagtacgggcgcgaggccgtctcccagatcatcaccttcggcaccatggcggccaag
gcggtggtgcgcgatgtcgggcgcgtcatgggtcatccctacgggttcgtcgaccgggtc
gccaagatggtgcccttcgagctggggatgaccctggagaaggcgctgaccgagagcgac
gatctgaaggccgcctacgaggacgacgaagagatccgggcactcatcgacatggcccgc
aagctcgaaggcctgacccgcaatgccggcaagcatgccggcggcgtggtgatcgcgccg
accaagctgaccgacttcgccccgctctactgcgagcagggcggagagaacctggtcacc
cagttcgacaaggacgacgtggagcaggtcggactggtcaagttcgacttcctgggtctg
cgcacgctcaccatcatcgattgggcgctcaagaccgtgaacgcgctgcgtcgcgaggcc
ggcgaggcgccgatcgacatcgagcggatcgagccgcaggatgccgaagccttcgcgctc
ctgaaacgctgcgagaccacggcggtcttccagctggagtcgcgcggcatgaaggagctg
atcaagaagctccagcccgacaacttcggcgacatcaccgcgctggtcgcactctttcgc
cccggcccgctgcagtcgggcatggtcgacgacttcatcaaccgcaagcacggccgcgcc
gaggtcgcctatccgcacccggatctggagcccatccttaaaccgacctacggcatcatc
ctttatcaagagcaggtgatgcagatcgcccaggtgctcgcagggtattcgctcggcggc
gccgacctgctgcgccgggcgatgggcaagaagaagcagtccgagatggacaagcagcgc
gccatcttcgaggaaggggcggtcgcgcgtggggtcgacggcaatgtggcgacctacatc
tttgacttaatggataaatttgccggttacggctttaacaagtgtgtcgttggagacacg
ctggtgacggatccatcaagcggtgaacggcactgcgtcaaggatatctatcgatcgggg
atcgacagggtcgcgagtctgttgtcggatcaccggatgggcgtgagccccgttgttcag
gtgatggagaacggtatccggccggtcttgagactgaccacctcgctcggcaagacactg
cgtgcgaccggcaatcaccctttgctgacggcaacgggctggcagcggctcgatgaattg
cgtgtcggcgagcgtatcgccgcgcccgcgcgattgccgatcgagggccgtgagcagtgg
cccgagcacgagttggtgaccttgggatgggttctctcggaagggaatacctgccatccc
agcggcttctatttttacaacaaggatgtcgaggccagggatgatttcgtgtccgccgca
agccgctttcccgacaccgtgccgacggtgcggctgaggccggaacgtgccgagacctgg
tgcgtttacgtcgggaccggtcgtgataccaggatcagctgcggaaacgggcacagcttc
acgccacgctccggtgctcgattgtggctggagcggctggacatggtcggccaaaaggcg
ccacaaaaacactttccgccatccgtctttcgtctcgacaatccatgcttggcggtgatt
ctcgggcgcatctggtcgggagacggatatgtcgccgccgaaaacgcgaacaacaagatc
ccctctctggctagcgcctccctgcgcctgatcagcgagacccagcatctcttgttgcgt
ttcggtatcgtcagccgactgacggaaaaactctttccgtataaggatgggcgggtcggc
tataccttgcacctagtcggacgaaggagcattaccgcatttgtcgagttgatcgggccg
cacttggtcgggaaagggaaacaattggaagcgctgcgcaggtcgctcgctgaaatcccg
agcgatctggaatccgtcgacactctgccgcccgagatcaagcaggccgtcggcttggag
aaggatcgcagtggcctgacgtggcgtcagattgaagctcgcagcggcgtttgcgtgaga
gcactctatggcaaggacgagccgcacaagaagggatttcgccgagcgacaatccgcaag
ctcgccgagtttttcgacgccgatttactcagacaagccgccgacgcggagatctattgg
gagcgtgtggtctcgatcgagccggatggcgcggccatgacctatgatctcgaggttgcg
gatacccacaattttgtcgccaacgacatcatcgtccataattcgcattcggccgcctac
gccctggtcagctatcaaaccctctggctgaagacgcactacacggcggccttcatggcg
gcggtgctgagtgcggatatggacaacaccgacaaggtggtgaccctgatcgaggagtgt
cgcgcgctgcgtctgcgggtcgagccgccggcggtcaatcgctccgcctaccgcttcacg
gtcgccgatccgcgcaccgtcatctacggcatgggcgccatcaagggggtcggagagggt
gcgatcgaggcgatcatcgcggcacgcacggccgagggtccgttccgcgatctctgggac
ttttgtcgacggatcgatctgcacaaggccaaccgacgcgttctcgaggcgctggtccgc
gccggcgcactcgacgagctgggaccgaaccgggcgaccctgatggccgagctgcccttg
gcgctcaagctggcagaacagcaccatgcgacccgggcggcgggtcagaccgatctcttc
ggtgcactggagccggtcgcctcgcccgagcccgatccccaactcgcgaccgaggtccgt
gtcgactgggaagacgagcagcgtctggcgggcgagaaggagaccctcgggctctatctg
accggacatccgatcgatcgctacgagtccgagctccaggcgatggcggtcagccggatc
gccaagctcttggaaacggatcgcgagctgggtcggcgcgaccgacgcgatcgcgagaag
cgcagcgtcgccggtctcgtggtctcggtgcgtcacggcaagacaccgcgcgggcgcatg
ggctcggtggtgctcgacgatcgcacggggcgcatcgagatcacggtcttctccgagctc
tacgagcagttgcgtcatctgctggtgccggatcagatcctgcaggtctccggggcgctc
aatttcgacgagtaccgcgacagctggtccttgcgtgccgacgacgtgcggaccttcgag
caggcacgggcgagcatggccgatcatctggggctgatcctggatctctcggaccccgct
gcccacgccgatggcctcgtccggctcgatgccttgcgcgccgcactcgcggcctttcgc
gacggggatcttccggtccgtctgcgctatcgtcgcccgggggccgccggcgagctggtg
ctcggcgatgcctggcgtgtcgagccggccgatgccctgctgaaacgtctgcgacagctc
ctcgggggcgatgcggtcagggtcgtctacgagcgctcgccgctaccgacggcgcagacc
gagacgcaacgtccgcgtctggcggcggtgggctga

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